Nelson R R - OmicsDI

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Unknown (4869)
Transcriptomics (163)
Proteomics (88)
Genomics (20)
Metabolomics (12)
Genomic (3)
Models (2)
Multiomics (1)

Organisms

Homo sapiens (99)
Schizosaccharomyces pombe (70)
Oryza sativa Indica Group (70)
Sinorhizobium meliloti BL225C (70)
Sus scrofa domesticus (70)
Ostreococcus tauri (70)
Saccharomyces cerevisiae (70)
Staphylococcus aureus (70)
Rattus norvegicus (70)
Escherichia coli (70)
Mus musculus (42)
Drosophila melanogaster (7)
Arabidopsis thaliana (5)
Saccharomyces cerevisiae (4)
Glycine max (3)
Rattus norvegicus (3)
Dichelobacter nodosus (2)
Aedes aegypti (2)
Thalassiosira pseudonana CCMP1335 (1)
Caldicellulosiruptor saccharolyticus (1)
Haemophilus influenzae R2866 (1)
Salmonella enterica (1)
Anaplasma phagocytophilum (1)
Macaca mulatta (1)
Ectocarpus siliculosus (1)
Bacillus anthracis (1)
Zea mays (1)
Oryza sativa (1)
Ovis aries (1)
Caenorhabditis elegans (1)

Organisms

Homo sapiens (2)

Repository

biostudies-arrayexpress (172)
pride (70)
MassIVE (15)
MetaboLights (12)
EGA (7)
ENA (4)
dbGaP (3)
BioModels (2)
PanoramaPublic (2)
jPOST (1)

Tissue

Cell culture (18)
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Urine (7)
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Skin (3)
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Astrocyte (2)
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Skeletal muscle (2)
Cell line cell (2)
Testis (2)
Spleen (2)
Immature microglial cell (1)
Synovial cell (1)
Ependymal cell (1)
Ovary cancer cell (1)
Culture fluid (1)
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Endothelial cell (1)
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Small intestine (1)
Sputum (1)
Embryonic stem cell (1)

Disease

Marinesco-Sjogren syndrome (2)
Prostate cancer (2)
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Pancreatic cancer (2)
High grade glioblastoma (1)
Uninfected (1)
Alveolar soft part sarcoma (1)
Demyelinating disease (1)
Brain small vessel disease (1)
Gaucher's disease (1)
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Hydrocephalus (1)
Stroke (1)
Osteosarcoma (1)
Cardiovascular system disease (1)
Tuberculosis (1)
Disease free (1)

Technology Type

Mass Spectrometry (70)
Shotgun proteomics (40)
Bottom-up proteomics (18)
Mass spectrometry (11)
Affinity purification coupled with mass spectrometry proteomics (9)
Data-dependent acquisition (5)
Data-independent acquisition (4)
Top-down proteomics (2)
Illumina OncoArray (1)
NMR spectroscopy (1)
SWATH MS (1)
SRM/MRM (1)

Instrument Platform

Q Exactive (9)
Illumina HiSeq 4000 (6)
NextSeq 500 (3)
Q Exactive Plus (3)
Liquid Chromatography MS - negative - reverse phase (3)
Liquid Chromatography MS - negative - hilic (3)
Liquid Chromatography MS - positive - hilic (3)
AB SOLiD 4 System (2)
Orbitrap Fusion Lumos (2)
MS Imaging - (2)
Liquid Chromatography MS - positive - reverse phase (2)
Whole Transcriptome v2 kit (1)
Illumina NovaSeq X (1)
Illumina HiSeq 2000 (1)
LTQ FT (1)
Various instruments (1)
LTQ Orbitrap Velos (1)
Orbitrap Fusion (1)
Varian (1)
Liquid Chromatography MS - (1)
Gas Chromatography MS - positive (1)
ESI-ION-TRAP (1)

Publication Date

2010 (36)
2013 (25)
2024 (21)
2021 (20)
2014 (20)
2016 (17)
2015 (17)
2025 (14)
2023 (14)
2008 (12)
2012 (11)
2026 (9)
2017 (9)
2009 (9)
2022 (7)
2011 (6)
2005 (6)
2019 (6)
2020 (5)
2007 (5)
2018 (2)
2006 (2)

CHEBI ID

CHEBI:15891 (4)
CHEBI:17822 (4)
CHEBI:6650 (4)
CHEBI:16811 (4)
CHEBI:29016 (4)
CHEBI:27570 (4)
CHEBI:21557 (3)
CHEBI:73705 (3)
CHEBI:48430 (3)
CHEBI:9410 (3)
CHEBI:16525 (3)
CHEBI:80774 (3)
CHEBI:28865 (3)
CHEBI:28834 (3)
CHEBI:9907 (3)
CHEBI:16359 (3)
CHEBI:17775 (3)
CHEBI:15611 (3)
CHEBI:28683 (3)
CHEBI:16668 (3)
CHEBI:15356 (3)
CHEBI:30769 (3)
CHEBI:15354 (3)
CHEBI:15727 (3)
CHEBI:17126 (3)
CHEBI:17750 (3)
CHEBI:15676 (3)
CHEBI:16027 (3)
CHEBI:27897 (3)
CHEBI:16449 (3)

Metabolite Name

Taurine (4)
Methionine (4)
Leucine (4)
Alanine (4)
N-acetylhistidine (3)
Cholesterol (3)
Urea (3)
Valine (3)
Tyrosine (3)
Tryptophan (3)
Threonine (3)
Serine (3)
Proline (3)
Phenylalanine (3)
Ornithine (3)
Lysine (3)
Lactate (3)
Isoleucine (3)
Glycine (3)
Glutamine (3)
Cysteine (3)
Creatinine (3)
Creatine (3)
Allantoin (3)
Adenine (3)
3-phosphoglycerate (3)
Cortisol (2)
Tartarate (2)
4-vinylphenol sulfate (2)
3-hydroxydecanoylcarnitine (2)

IsPrivate

False (2)

Submitter Keywords

COVID-19 (1)

First Public Date

2026 (2)
2014 (2)

Modelling Approach

Ordinary differential equation model (2)

Modification

Not available (1)

Study type

Transcription profiling by array (106)
RNA-seq of coding RNA (17)
ChIP-seq (7)
Methylation profiling by array (7)
Comparative genomic hybridization by array (6)
RNA-seq of non coding RNA (6)
Unknown experiment type (5)
Transcription profiling by tiling array (3)
Cell line - High-throughput sequencing (2)
Genotyping by array (2)
Transcription profiling by RT-PCR (2)
Other (2)
RNA-seq of coding RNA from single cells (2)
Methylation profiling by high throughput sequencing (2)
Transcription profiling by SAGE (1)
ChIP-chip by tiling array (1)
RIP-seq (1)

Release Date

2022 (526)
2021 (478)
2023 (451)
2025 (428)
2024 (411)
2020 (360)
2019 (338)
2018 (262)
2015 (242)
2016 (234)
2017 (231)
2014 (199)
2013 (168)
2012 (156)
2011 (156)
2010 (112)
2026 (64)
2009 (53)
2008 (51)
2005 (29)
2006 (18)
2007 (17)
2003 (15)
2002 (14)
2004 (8)
2000 (8)
2001 (4)
1999 (4)
1998 (2)
1996 (1)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (6)
J. Craig Venter Institute, Rockville, MD 20850 (5)
College of Life Sciences, University of Dundee (2)
DZNE Munich, Neuroproteomics, Feodor-Lynen Str. 17, 81377 Munich, Germany (2)
Medimmune LLC (1)
Department of Microbiology & Immunology, Cornell University College of Veterinary Medicine (1)
Associate Professor, Department of Neurology, Yale University School of Medicine (1)
Srikant Rangaraju, MD MS Associate Professor Department of Neurology Vascular Neurology Division Emory University (1)
Institute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne, United Kingdom (1)
University of Minnesota, Twin-Cities, Pharmacology Department (1)
University of Minnesota, Twin-cities Pharmacology Department (1)
Leibniz-Institut für Analytische Wissenschaften - ISAS - e.V., Otto-Hahn-Str. 6b, 44227 Dortmund, Germany. Tel: ++49-231-13924232; Fax: ++49-231-13924850 (1)
Leibniz-Institut für Analytische Wissenschaften - ISAS - e.V., Otto-Hahn-Str. 6b, 44227 Dortmund, Germany. Tel: ++49-231-13924232; Fax: ++49-231-13924850 (1)
Associate Professor of Oncological Sciences Huntsman Cancer Institute at the University of Utah (1)
Broad Institute, Dana Farber Cancer Institute (1)
Biochemistry and Molecular Biology, UTMB, Galveston, TX (1)
DIRECTOR, THE PICOWER INSTITUTE FOR LEARNING AND MEMORYAT MIT PICOWER PROFESSOR OF NEUROSCIENCE, DEPARTMENT OF BRAIN AND COGNITIVE SCIENCES SENIOR ASSOCIATE MEMBER, BROAD INSTITUTE (1)
Computational Biology Division, Department of Integrative Biomedical Sciences, IDM, University of Cape Town, South Africa (1)
Department of Neurology Associate Professor (1)
The Scripps Research Institute, Department of Molecular Medicine, La Jolla, California, USA (1)
1Department of Neurosurgery, Yale School of Medicine, New Haven, CT, USA. Department of Neurosurgery, Massachusetts General Hospital and Harvard Medical School, Boston, Massachusetts, USA Broad Institute of Harvard and MIT, Cambridge, Massachusetts, USA (1)
School of Biological Sciences; Faculty of Biology, Medicine and Health; The University of Manchester (1)
J. Craig Venter Institute, Rockville MD 20850 USA (1)
Department of Physical Therapy University of Florida (1)
Clinical Proteomics Facility, Medical Biochemistry, Academic Medical Center, University of Amsterdam (1)
School of Pharmacy Mass Spectrometry Center, Department of Pharmaceutical Sciences, University of Maryland, Baltimore. (1)
Department of Pathology and Cancer Center, Stony Brook University, Stony Brook, NY 11794 (1)
Telomere Length Regulation Unit, Children's Medical Research Institute, Westmeand, Australia (1)
Children's Medical Research Institute, Westmead, NSW, Australia (1)
Children's Medical Research Institute, Westmead, NSW (1)

Tags

xref:PubMed:17804732 (1)
xref:PubMed:17510436 (1)

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SIRT6 regulates Ras-related protein R-Ras2 by lysine defatty-acylation.

Not available

S-EPMC5391209 | biostudies-literature

BAC-trap studies of Purkinje cells in normal and FMR1 mutant mice

The molecular mechanism(s) leading to Purkinje neuron loss in the neurodegenerative disorder Fragile X-Associated Tremor/Ataxia Syndrome (FXTAS) are limited by the complex morphology of this cell type. Purkinje neurons are notoriously difficult to isolate and maintain in culture presenting considera...

ORGANISM(S): Mus musculus

2014-05-01 | E-GEOD-57034 | biostudies-arrayexpress

LocalControl: An R Package for Comparative Safety and Effectiveness Research.

Not available

S-EPMC8330612 | biostudies-literature

The CBI-R detects early behavioural impairment in genetic frontotemporal dementia.

Not available

S-EPMC9082390 | biostudies-literature

A phase 1-2 trial of DA-EPOCH-R plus ixazomib for MYC-aberrant lymphoid malignancies: the DACIPHOR regimen.

Not available

S-EPMC10987893 | biostudies-literature

The R-type pyocin of Pseudomonas aeruginosa C is a bacteriophage tail-like particle that contains single-stranded DNA.