Nem - OmicsDI

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Transcriptomics (481)
Proteomics (307)
Unknown (282)
Genomics (225)
Metabolomics (8)
Clinical (1)

Organisms

Homo sapiens (208)
Mus musculus (145)
Rattus norvegicus (18)
Caenorhabditis elegans (17)
Arabidopsis thaliana (13)
Drosophila melanogaster (11)
Pristionchus pacificus (8)
Danio rerio (8)
Human papillomavirus (7)
Escherichia coli (7)
Escherichia coli str. K-12 substr. MG1655 (7)
Saccharomyces cerevisiae (6)
Bacillus subtilis (5)
Bacillus subtilis subsp. subtilis str. 168 (4)
Neisseria meningitidis (4)
Mycobacterium tuberculosis H37Rv (4)
Sus scrofa (4)
bioreactor metagenome (3)
synthetic construct (3)
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (3)
Bos taurus (3)
Gallus gallus (3)
Yersinia pestis (2)
Apis mellifera (2)
Staphylococcus aureus (2)
Drosophila hawaiiensis (1)
Spodoptera exigua (1)
Oreochromis niloticus (1)
Salmo trutta (1)
Streptococcus uberis (1)

Organisms

Heligmosomoides polygyrus (4)
Heligmosomoides polygyrus bakeri (4)
Homo sapiens (3)
Angiostrongylus malaysiensis (2)
Caenorhabditis sp. BRC20456 (2)
Caenorhabditis sp. BRC20483 (2)
Adoncholaimus thalassophygas (2)
2934261 (2)
Oscheius sp. DF5033 (2)
Litoditis marina (2)
Diploscapter coronatus (2)
Oscheius myriophilus (2)
Auanema rhodense (2)
Spirocerca lupi (2)
Turbatrix aceti (2)
Caenorhabditis sinica (2)
Sphaerolaimus hirsutus (2)
Daptonema setosum (2)
Panagrolaimus superbus (2)
Caenorhabditis virilis (2)
Acrobeloides nanus (2)
Auanema sp. JU3283 (2)
Acanthocheilonema viteae (2)
Caenorhabditis zanzibari (2)
Caenorhabditis sulstoni (2)
Oscheius sp. JU1182 (2)
Oscheius sp. JU992 (2)
Oscheius sp. TWN1964 (2)
Oscheius sp. DF5083 (2)
Auanema sp. JU1809 (2)

Repository

biostudies-arrayexpress (515)
pride (291)
ENA (175)
EGA (15)
MetaboLights (8)
geo (6)
MassIVE (6)
jPOST (3)
iProX (2)

Tissue

Cell culture (65)
Brain (39)
Epithelial cell (33)
Permanent cell line cell (12)
Amygdala (9)
Lung (9)
Cell suspension culture (8)
Liver (8)
Macrophage (8)
HeLa cell (6)
Leaf (6)
Monocyte (6)
Plant cell (6)
Egg (5)
Kidney (5)
Embryo (4)
Heart (4)
Skeletal muscle (4)
Whole body (4)
Blood cell (3)
Bone (3)
Early embryonic cell (3)
Melanocyte (3)
T cell (3)
Bone marrow (2)
Brown adipose tissue (2)
Cell line cell (2)
Cerebrospinal fluid (2)
Colon (2)
HEK-293 cell (2)

Disease

Post-traumatic stress disorder (5)
Breast cancer (4)
Acute leukemia (3)
Cervix carcinoma (3)
Chronic kidney disease (3)
Chronic kidney disease (3)
Decreased fumarate hydratase activity (3)
Disease free (3)
Melanoma (3)
Acute myeloid leukemia (2)
Brain glioblastoma multiforme (2)
Chagas disease (2)
FTDALS1 (2)
Parkinson's disease (2)
Prostate adenocarcinoma (2)
Type 2 diabetes mellitus (2)
XCGD (1)
Progressive skeletal muscle myopathy (1)
Primary tumor (1)
Sarcoma (1)
Reference (1)
Prostate carcinoma (1)
Normal (1)
Opioid induced constipation (1)
Acute myocardial infarction (1)
Allergic asthma (1)
Alopecia (1)
Alzheimer's disease (1)
Amyloidosis (1)
Amyotrophic lateral sclerosis (1)

Technology Type

Mass Spectrometry (291)
Shotgun proteomics (158)
Affinity purification coupled with mass spectrometry proteomics (81)
Bottom-up proteomics (65)
Data-dependent acquisition (55)
Gel-based experiment (19)
Data-independent acquisition (9)
Mass spectrometry (6)
SRM/MRM (6)
Top-down proteomics (6)
SWATH MS (5)
Mass spectrometry assay (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Illumina HiSeq 2000 (1)
Affinity proteomics (1)
DiaPASEF (1)
MSE (1)

Instrument Platform

Illumina HiSeq 2500 (31)
Illumina HiSeq 2000 (25)
NextSeq 500 (22)
Illumina NovaSeq 6000 (21)
Illumina HiSeq 4000 (9)
NextSeq 550 (7)
Illumina NovaSeq X (5)
DNBSEQ-G400 (4)
ScanArray Express HT (3)
Illumina HiSeq 1500 (3)
Controlled-environment growth chamber (short-day; 8 h light / 16 h dark) (2)
Linux computer (2)
GenePix 4000B [Axon Instruments] (2)
NA (2)
Agilent NGS Workstation (2)
Illumina MiSeq (2)
Active Motif Catalog No. 53150 (1)
ATAC-seq kit (Catalog No. 53150, Active Motif) (1)
IEO HPC (1)
Covaris sonicator, PCR thermocycler, magnetic rack for SPRI bead clean-up (1)
Liquid-nitrogen mortar and pestle, benchtop microcentrifuge, vortex mixer (1)
Dissecting tools, liquid nitrogen, −80 °C freezer (1)
Thermocycler; magnetic rack for SPRI bead clean-up (1)
Liquid-nitrogen grinding tools; benchtop centrifuge (1)
Cutadapt, STAR (1)
TruSeq Stranded mRNA Sample Prep Kit (Illumina) (1)
BD InFlux Cytometer (Becton-Dickinson) (1)
BD FACSMelody (1)
10x Genomics Chromium (1)
10X Genomics Chromium (1)

Publication Date

2014 (67)
2025 (59)
2015 (59)
2012 (56)
2021 (52)
2024 (48)
2023 (45)
2013 (45)
2022 (42)
2016 (42)
2011 (42)
2018 (39)
2019 (38)
2026 (37)
2020 (36)
2010 (35)
2008 (22)
2009 (21)
2017 (20)
2007 (13)
2006 (6)
2005 (2)
2003 (2)

CHEBI ID

CHEBI:67061 (2)
CHEBI:72736 (2)
CHEBI:68434 (2)
CHEBI:64561 (2)
CHEBI:21563 (2)
CHEBI:17202 (2)
CHEBI:17858 (2)
CHEBI:15741 (2)
CHEBI:68433 (2)
CHEBI:82969 (2)
CHEBI:68848 (2)
CHEBI:15891 (2)
CHEBI:17385 (2)
CHEBI:17597 (2)
CHEBI:16027 (2)
CHEBI:72737 (2)
CHEBI:64563 (2)
CHEBI:18344 (2)
CHEBI:195385 (1)
CHEBI:195383 (1)
CHEBI:195378 (1)
CHEBI:195377 (1)
CHEBI:195384 (1)
CHEBI:195397 (1)
CHEBI:195375 (1)
CHEBI:195396 (1)
CHEBI:195394 (1)
CHEBI:195376 (1)
CHEBI:195386 (1)
CHEBI:145312 (1)

Metabolite Name

Taurine (4)
Uracil (3)
Citrulline (3)
Phenylacetylglycine (3)
Tyramine (3)
Adenosine (3)
Spermidine (3)
Pantothenic Acid (3)
Creatine (3)
Hippuric acid (3)
Hypoxanthine (3)
N-Acetyl-methionine (2)
Aminohydroquinone (2)
S-(2-carboxypropyl)-Cysteamine (2)
13Z-Docosenamide (2)
Tetrahydropentoxyline (2)
Geranylcitronellol (2)
2,5-Dimethylbenzaldehyde (2)
(S)-Oleuropeic acid (2)
N-Acetylaspartylglutamic acid (2)
Hydroxyprolyl-Valine (2)
LysoPE(0:0/20:5(5Z,8Z,11Z,14Z,17Z)) (2)
3-Oxododecanoic acid (2)
Formyl-5-hydroxykynurenamine (2)
LysoPE(20:4(8Z,11Z,14Z,17Z)/0:0) (2)
Linoleamide (2)
(2R,3R,4R)-2-Amino-4-hydroxy-3-methylpentanoic acid (2)
LysoPE(0:0/18:3(6Z,9Z,12Z)) (2)
D-Glucose (2)
Leucine (2)

First Public Date

2025 (128)
2026 (17)
2022 (15)
2024 (9)
2015 (2)
2020 (1)
2019 (1)
2016 (1)
2014 (1)

Classification

helminths (4)

Modification

N6-dimethyl-L-lysine (2)
4-tetrahydrothiazine-3-carboxylic acid (1)
6-dioxaoctanediamine derivatized cysteine (1)

Study status

Completed (1)

Study type

Transcription profiling by array (236)
RNA-seq of coding RNA (85)
ChIP-seq (32)
RNA-seq of coding RNA from single cells (32)
ChIP-chip by tiling array (17)
Transcription profiling by RT-PCR (14)
Other (12)
Genotyping by array (10)
Comparative genomic hybridization by array (9)
RNA-seq of non coding RNA (9)
RNA-seq of total RNA (7)
Methylation profiling by array (5)
Proteomic profiling by array (5)
Human - Single-cell sequencing (4)
Baseline (3)
High-throughput sequencing (3)
Cell line - High-throughput sequencing (3)
ChIP-chip by array (3)
MicroRNA profiling by array (3)
Cell line - Single-cell sequencing (2)
Unknown experiment type (2)
Differential (2)
Single nucleus RNA sequencing (2)
CUT&RUN (2)
Methylation profiling by high throughput sequencing (2)
Tiling path by array (1)
RIP-chip by array (1)
Animal - One-color microarray (1)
Animal - Single-cell sequencing (1)
Human - High-throughput sequencing (1)

Release Date

2014 (73)
2015 (64)
2012 (63)
2021 (55)
2013 (52)
2011 (44)
2018 (37)
2022 (36)
2020 (36)
2010 (36)
2019 (35)
2016 (35)
2024 (31)
2025 (30)
2023 (28)
2017 (27)
2008 (27)
2009 (26)
2026 (19)
2007 (18)
2006 (9)
2005 (5)
2003 (3)
2004 (3)
2002 (2)
1999 (1)
1998 (1)
1992 (1)

Lab affiliation

Department of Animal and Poultry Sciences and the School of Neuroscience, Virginia Tech, Blacksburg, VA, USA (19)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (3)
Molecular Biology and the Lewis-Sigler Institute for Integrative Genomics, Princeton University, USA (3)
Washington University in Saint Louis (3)
Associate Professor, School of Animal Sciences Core Faculty, School of Neuroscience Faculty of Health Sciences Vice Chair, Institutional Biosafety Committee (IBC) Virginia Tech (2)
Cedars-Sinai Medical Center (2)
College of Plant Science and Technology, Huazhong Agricultural University (2)
Department of Physiology, Faculty of Pharmacy, University of Valencia, Burjassot, Valencia, Spain (2)
Harvard Medical School (2)
Institute of Biochemistry II, Faculty of Medicine, Goethe University, Theodor-Stern-Kai 7, D-60590 Frankfurt am Main, Germany (2)
Institute of Molecular Biology (IMB), Mainz, Germany (2)
Laboratory of Chemical Biology and Microbial Pathogenesis, The Rockefeller University, New York, NY 10065, USA (2)
Medical Research Council Protein Phosphorylation and Ubiquitylation Unit School of Life Sciences, University of Dundee, Dundee, Scotland (2)
Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark (2)
Physiology, NUI Galway (2)
Professor, University of British Columbia (2)
Professor, Unversity of British Columbia (2)
Shanghai Normal University,Shanghai,China (2)
Univ.Prof. PD DI Dr.techn. Professor for Bioanalytics TU Wien Faculty of Technical Chemistry Institute of Chemical Engineering and Analytics Department of Imaging and Analytical Chemistry Research Group Bioanalytics Getreidemarkt 9/E164 1060 Vienna Austria (2)
Yale University (2)
1 Cancer Institute, Xuzhou Medical University, Xuzhou, Jiangsu, China. 2 Center of Clinical Oncology, The Affiliated Hospital of Xuzhou Medical University, Xuzhou, China. 3 State Key Laboratory Jiangsu Center for the Collaboration and Innovation of Cancer Biotherapy, Cancer Institute, Xuzhou Medical University, Xuzhou, Jiangsu, China. (1)
1 Institute for Research in Immunology and Cancer, Université de Montréal, Montréal, Canada 2 Department of Chemistry, Université de Montréal, Montréal, Canada (1)
1) Chemical Biology Program, Memorial Sloan Kettering Cancer Center, New York, New York, 10065, USA. 2) Pharmacology Program of the Weill Cornell Graduate School of Medical Sciences, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA. 3) Tri-Institutional PhD Program in Chemical Biology, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA. (1)
1. Institut de Recherche en Immunologie et Cancérologie (IRIC), Université de Montréal, Montréal, Québec, Canada. 2. Département de Biochimie et Biologie Moléculaire, Université de Montréal, Montréal, Québec, Canada. 3. Département de Chimie, Université de Montréal, Montréal, Québec, Canada (1)
225, Veterinary Medical Center University of Minnesota 1365, Gortner Avenue St. Paul, MN 55108 (1)
Affiliation of Qiutao Xu: State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Agriculture, Guangxi University, Nanning 530004, China (1)
Anastasios Vourekas 131 Life Science Life Building Department of Biological Sciences Louisiana State University Baton Rouge, LA 70803 office at A108 (225-578-1737) lab at A151-A149 (225-578-9103) (1)
Assistant Professor of Molecular Biology and the Lewis-Sigler Institute for Integrative Genomics, Princeton University (1)
Associate Professor Dept. of Pathology and Laboratory Medicine HSRF 218, University of Vermont Larner College of Medicine Burlington, Vermont, 05405, USA (1)
Associate Professor, School of Animal Sciences Core Faculty, School of Neuroscience Associate Professor of Health Sciences Co-Director, Molecular and Cellular Biology (MCB) Graduate Program Virginia Tech (1)

Location

Slovakia (1)
Poland (1)
Germany (1)
Czechia (1)
Italy (1)
Spain (1)
Hungary (1)
United Kingdom (1)
Austria (1)

Keyword

Naloxone Hydrochloride Prolonged Release Tablets (1)

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Analyzing synergistic and non-synergistic interactions in signalling pathways using Boolean Nested Effect Models

Understanding the structure and interplay of cellular signalling pathways is one of the great challenges in molecular biology. Boolean Networks can infer signalling networks from observations of protein activation. In situations where it is difficult to assess protein activation directly, Nested Eff...

ORGANISM(S): Homo sapiens

2015-12-10 | E-GEOD-68761 | biostudies-arrayexpress

Genome sequencing of Trypanosoma carassii TsCc-NEM

Trypanosoma carassii TsCc-NEM genome paired read

PRJEB89806 | ENA

Staurosporine and NEM mainly impair WNK-SPAK/OSR1 mediated phosphorylation of KCC2 and NKCC1.

Not available

S-EPMC7228128 | biostudies-literature

Expression data from oxidant treated yeast

Yeast transcription factor Yap1 mediates adaptive response against H2O2 and the cystein thiol reactive Michael acceptor, N-ethylmaleimid (NEM) and acrolein. The response against H2O2 was found to be distinct from that against NEM and acrolein. We used microarray experiment to identify two subsets o...

ORGANISM(S): Saccharomyces cerevisiae

2010-12-30 | E-GEOD-19213 | biostudies-arrayexpress

Nem@ToL

The Nematode Genomes Project at Tree of Life, Wellcome Sanger Institute

PRJEB51433 | ENA

Complete Genome Sequence of Lactobacillus plantarum Strain B21, a Bacteriocin-Producing Strain Isolated from Vietnamese Fermented Sausage Nem Chua.

Not available

S-EPMC4384474 | biostudies-literature

Draft Genome Sequence of Lactobacillus plantarum Strain A6, a Strong Acid Producer Isolated from a Vietnamese Fermented Sausage (Nem Chua).

Not available

S-EPMC5637488 | biostudies-literature

Photovoltaic modules evaluation and dry-season energy yield prediction model for NEM in Malaysia.