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MetabolomicsMetaboKit: a comprehensive data extraction tool for untargeted metabolomics (Mouse liver assays)

We have developed MetaboKit, a comprehensive software package for compound identification and relative quantification in mass spectrometry-based untargeted metabolomics analysis. In data dependent acquisition (DDA) analysis, MetaboKit constructs a customized spectral library with compound identit...

2021-11-02 | MTBLS1266 | MetaboLights
MetabolomicsMetaboKit: a comprehensive data extraction tool for untargeted metabolomics (Standard mixture assay)

We have developed MetaboKit, a comprehensive software package for compound identification and relative quantification in mass spectrometry-based untargeted metabolomics analysis. In data dependent acquisition (DDA) analysis, MetaboKit constructs a customized spectral library with compound identit...

2021-11-05 | MTBLS1311 | MetaboLights
ProteomicsThe signal transduction protein PII controls ammonium, nitrate and urea uptake in cyanobacteria
PII signal transduction proteins are widely spread among all domains of life where they regulate a multitude of carbon and nitrogen metabolism related processes. Non-diazotrophic cyanobacteria can utilize a high variety of organic and inorganic nitrogen sources. In recent years, several physiologica...
ORGANISM(S): Synechocystis sp. PCC 6803 
2019-07-10 | PXD013411 | Pride
Urea uptake Nitrogen regulation Abc transporters Nitrate uptake Ammonium uptake Glnb Cyanobacteria Pii signaling protein 
UnknownThe AST/ALT (De Ritis) ratio predicts clinical outcome in patients with pancreatic cancer treated with first-line nab-paclitaxel and gemcitabine: post hoc analysis of an Austrian multicenter, noninterventional study.
Not available
S-EPMC7153180 | biostudies-literature
UnknownHigh rate of complete histopathological response in hepatocellular carcinoma patients after combined transarterial chemoembolization and stereotactic body radiation therapy.
Not available
S-EPMC8240047 | biostudies-literature
ProteomicsTumor-targeting and cytokine-armed vaccinia virus promotes cytotoxicity towards pancreatic carcinoma cells via activation of human intermediary CD56dimCD16dim natural killer cells.
Pancreatic ductal adenocarcinoma (PDAC) remains a particularly aggressive disease with few effective treatments. The PDAC tumor immune microenvironment (TIME) has been characterized as immune suppressed. Oncolytic viruses can increase tumor antigenicity via immunogenic cell death (ICD). In this stud...
ORGANISM(S): Homo sapiens (Human) 
2024-09-20 | PXD048276 | Pride
Tmt Natural killer cells Human Immunogenic cell death Tumor-targeting vaccinia virus Phosphorylation Immune modulation Global proteome 
UnknownCombining venetoclax and azacytidine with T-cell bispecific antibodies for treatment of acute myeloid leukemia: a preclinical assessment.
Not available
S-EPMC10844082 | biostudies-literature
Transcriptomics3' single cell sequencing of CD45+ lymphocytes sorted from mesenteric white adipose tissue in wildtype C57BL/6 and WIPf1-/- mice
Mesenteric white adipose tissue from wildtype C57BL/6 and Wipf1-/- mice was harvested through vivosection, minced and digested. Tissue-resident lymphocytes were enriched with Percoll gradient centrifugation. CD45 staining and fluorescence associated cell sorting were performed to achieve a pure lymp...
ORGANISM(S): Mus musculus 
2026-07-31 | E-MTAB-17384 | biostudies-arrayexpress
UnknownFactors associated with reduction in quality of life after SARS-CoV-2 infection.
Not available
S-EPMC11861590 | biostudies-literature
TranscriptomicsMolecular alterations in bone marrow mesenchymal stromal cells (BM-MSC) derived from acute myeloid leukemia patients (AML)
Genome wide methylation profiling of BM-MSC derived from AML patients in comparison to healthy donor controls using Illumina Infinium HumanMethylation450 Beadchip bisulfit converted genomic DNA extracted from BM-MSC samples (AML n=32) and healthy donor controls (n=12) were hybridized onto an Illumi...
ORGANISM(S): Homo sapiens 
2016-03-30 | E-GEOD-79695 | biostudies-arrayexpress
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