Neural circuit - OmicsDI

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Unknown (3783)
Transcriptomics (394)
Genomics (326)
Proteomics (22)
Other (10)
Metabolomics (4)
Models (2)
Methylation profiling (2)
Genomic (1)

Organisms

Mus musculus (224)
Homo sapiens (123)
Drosophila melanogaster (19)
Caenorhabditis elegans (17)
Arabidopsis thaliana (12)
Danio rerio (10)
Rattus norvegicus (8)
Carassius auratus (8)
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Taeniopygia guttata (5)
Gallus gallus (5)
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Aplysia californica (2)
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Escherichia coli K-12 (1)
Escherichia coli str. K-12 substr. MG1655 (1)

Organisms

Mus musculus (141)
Homo sapiens (35)
Drosophila melanogaster (9)
Danio rerio (8)
Caenorhabditis elegans (5)
Rattus norvegicus (4)
Leucoraja erinaceus (3)
Taeniopygia guttata (3)
Mchenga conophoros (2)
Lonchura striata (2)
Macaca fascicularis (2)
Nothobranchius furzeri (2)
Macaca mulatta (2)
Gallus gallus (2)
Estrildidae (1)
Aplysia californica (1)
Aedes aegypti (1)
Sus scrofa (1)

Repository

ENA (266)
biostudies-arrayexpress (241)
geo (219)
pride (12)
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Tissue

Brain (8)
Astrocyte (3)
SVGp12 cell (2)
Appendage (1)
Head (1)
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Optic lobe lamina (1)
Hindbrain (1)
T cell (1)

Disease

Cerebrovascular disease (3)
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Normal (1)
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Alzheimer's disease (1)

Technology Type

Mass Spectrometry (12)
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Mass spectrometry assay (2)
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Instrument Platform

Illumina NovaSeq 6000 (16)
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Illumina HiSeq 2500 (5)
Fluidigm C1 (3)
Single-Cell Extraction: For enzymatic digestion, pronase (Septomyces argeus, 1 mg/mL) was applied for 25 minutes at room temperature for P0 to P8 datasets. Cells were dissociated and triturated into a single-cell suspension in ACSF supplemented with 1% fetal calf serum (FCS) and DNase (1 µL/10 mL). Trituration was performed using three glass Pasteur pipettes of decreasing diameters. For P30 datasets, enzymatic digestion and cell dissociation were carried out using the Worthington Papain Dissociation System, following the manufacturer’s instructions. Single-Nuclei Extraction: For nuclei isolation, the Hibernate™-E Medium was removed, and 500 µL of chilled 0.1X NP40 Lysis Buffer was added. Tissue was homogenized using a Pellet Pestle (15 strokes) and incubated on ice for 5 minutes. The suspension was pipette-mixed 10 times using a wide-bore pipette tip and incubated for an additional 10 minutes on ice. Following lysis, 500 µL of chilled wash buffer was added, and the mixture was pipette-mixed 5 times using a regular-bore pipette tip. The suspension was filtered through a 30 µm cell strainer into a 50 mL tube to remove debris. The filtered suspension was transferred to a 1.5 mL tube and centrifuged at 950 × g for 10 minutes at 4°C. The supernatant was carefully removed, and the nuclei pellet was retained for downstream analysis. (2)
Chromium 10x (2)
Linux computer (2)
Linux Beowulf cluster; AMD Opteron Linux Beowulf cluster; AMD Opteron 6168 (2)
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NextSeq 500 (2)
Hamamatsu Nanozoomer S60 (1)
Chromium Next GEM Chip G (1)
10X v3 (1)
Illumina Bead Array Reader (1)
BD FACSARIA III (1)
Fludigm C1 (1)
ArrayWoRx Biochip Reader [Applied Precision] (1)
NextSeq 2000 (1)
GenePix 4000B (1)
BGISEQ-500 (1)
LTQ Orbitrap XL (1)
Orbitrap Fusion (1)
Q Exactive HF (1)
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Orbitrap Exploris 480 (1)
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Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)

Publication Date

2026 (70)
2025 (46)
2024 (38)
2015 (35)
2011 (30)
2016 (29)
2014 (27)
2023 (26)
2022 (26)
2010 (25)
2013 (21)
2021 (17)
2018 (17)
2009 (15)
2012 (14)
2008 (14)
2020 (14)
2019 (9)
2017 (6)
2004 (5)
2007 (3)
2006 (2)

UNIPROT ID/AC

P42212 (1)

CHEBI ID

CHEBI:136254 (1)
CHEBI:71881 (1)
CHEBI:71871 (1)
CHEBI:167224 (1)
CHEBI:71846 (1)
CHEBI:71844 (1)
CHEBI:71826 (1)
CHEBI:145855 (1)
CHEBI:167277 (1)
CHEBI:167266 (1)
CHEBI:156028 (1)
CHEBI:167229 (1)
CHEBI:167227 (1)
CHEBI:71839 (1)
CHEBI:156015 (1)
CHEBI:71833 (1)
CHEBI:167217 (1)
CHEBI:167219 (1)
CHEBI:194401 (1)
CHEBI:89824 (1)
CHEBI:74930 (1)
CHEBI:194400 (1)
CHEBI:194399 (1)
CHEBI:194398 (1)
CHEBI:64608 (1)
CHEBI:194374 (1)
CHEBI:134735 (1)
CHEBI:194396 (1)
CHEBI:194395 (1)
CHEBI:194394 (1)

Metabolite Name

Taurine (3)
Coenzyme A (2)
Homovanillic acid (2)
Citrulline (2)
2-Hydroxybutyric acid (2)
Alpha-Ketoglutaric acid (2)
N4-Acetylcytidine (2)
N-Acetyl-L-tyrosine (2)
Adrenic acid (2)
Arachidonic acid (2)
Citric acid (2)
Stearic acid (2)
Palmitic acid (2)
L-Tryptophan (2)
Dodecanedioic acid (2)
Pseudouridine (2)
GW501516 (1)
Nicotinamide adenine dinucleotide phosphate (NADP+) (1)
Beta-Nicotinamide adenine dinucleotide reduced (NADH) (1)
Beta-Nicotinamide adenine dinucleotide (NAD+) (1)
Adenosine 5'-triphosphate (5'-ATP) (1)
Inosine 5'-monophosphate (5'-IMP) (1)
Ketoleucine (4-Methyl-2-oxopentanoic acid) (1)
S-(5'-Adenosyl)-L-methionine (SAM) (1)
Adenosine 5'-monophosphate (5'-AMP) (1)
L-Glutathione reduced (1)
UDP-Glucose (1)
UDP-Galacturonic acid (1)
Sn2 LysoPE(22:6) (1)
Sn2 LysoPE(22:4) (1)

IsPrivate

False (2)

First Public Date

2026 (64)
2025 (45)
2024 (39)
2023 (22)
2020 (17)
2022 (16)
2014 (14)
2018 (12)
2021 (10)
2019 (8)
2017 (8)
2016 (5)
2015 (4)
2013 (2)

Modelling Approach

Ordinary differential equation model (2)

Study type

Transcription profiling by array (135)
RNA-seq of coding RNA (29)
ChIP-seq (27)
RNA-seq of coding RNA from single cells (24)
ScATAC-seq (3)
Methylation profiling by array (3)
ChIP-chip by tiling array (2)
Animal - High-throughput sequencing (2)
Comparative genomic hybridization by array (2)
ATAC-seq (2)
Baseline (1)
Unknown experiment type (1)
Human - Two-color microarray (1)
Cell line - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
ChIP-chip by array (1)
Transcription profiling by RT-PCR (1)
Other (1)
Single nucleus RNA sequencing (1)
DNA-seq (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (475)
2022 (429)
2023 (415)
2024 (384)
2021 (381)
2020 (282)
2018 (235)
2016 (220)
2019 (218)
2017 (213)
2015 (188)
2014 (138)
2026 (83)
2013 (72)
2011 (65)
2012 (54)
2010 (46)
2008 (44)
2009 (42)
2006 (15)
2007 (9)
2004 (7)
2005 (7)
2003 (1)
2001 (1)

Lab affiliation

First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China (3)
Department of Neurology, Fujian Medical University Union Hospital (1)
Nanobio Measurement Group, Division of Biomedical Metrology, Korea Research Institute of Standards and Science, Daejeon 34113, Republic of Korea (1)
1. CERVO Brain Research Centre, Quebec Mental Health Institute; Québec, QC, G1E 1T2, Canada. 2. Department of Psychiatry & Neuroscience, Université Laval; Québec, QC, G1V 0A6, Canada. (1)
Department of Physiology and Department of Neurobiology. David Geffen School of Medicine, University of California Los Angeles. Los Angeles, CA 90095-1751, USA (1)
Buck Institute for Research on Aging (1)
Group Leader, Quattrocolo Lab, Kavli Institute for Systems Neuroscience and Centre for Neural Computation, Norwegian University of Science and Technology (NTNU), Trondheim 7491, Norway (1)
Graduate school of Biomedical and Health Sciences, Hiroshima University (1)
Department of Neurobiology and Behavior, University of California, Irvine (1)
Department of Pharmacology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA (1)

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Identification of cranial-specific neural crest genes by comparative transcriptomics

We employ RNA-seq of FACS sorted cell populations to identify genes that are enriched in cranial neural crest in relationship to the trunk. Transcriptional profiling of delaminating cranial and trunk neural crest subpopulations.

ORGANISM(S): Gallus gallus

2016-06-24 | E-GEOD-75125 | biostudies-arrayexpress

Astrocyte-encoded positional cues maintain sensorimotor circuit integrity

Astrocytes, the most abundant cells in the central nervous system, promote synapse formation and help refine neural connectivity. Although they are allocated to spatially distinct regional domains during development, it is unknown whether region-restricted astrocytes are functionally heterogeneous. ...

ORGANISM(S): Mus musculus

2014-05-02 | E-GEOD-55054 | biostudies-arrayexpress

Neural circuit basis of placebo pain relief [10X]

PRJNA1110771 | ENA

Connect-seq to superimpose molecular on anatomical neural circuit maps

PRJNA587638 | ENA

Neural circuit basis of placebo pain relief [SMART-seq]

PRJNA1110772 | ENA

Neural Circuit Dysfunction in SAH Mice: Targeting PSAP for Therapeutic Intervention in Consciousness Disorders

PRJNA1256415 | ENA

Hippocampal neural circuit connectivity alterations in an Alzheimer's disease mouse model revealed by monosynaptic rabies virus tracing.

Not available