Ngs - OmicsDI

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Unknown (10394)
Genomics (9012)
Transcriptomics (1883)
Other (105)
Proteomics (52)
Methylation profiling (33)
Clinical (31)
Genomic (16)
Metabolomics (5)
Multiomics (1)

Organisms

Homo sapiens (1289)
Mus musculus (677)
Drosophila melanogaster (306)
Arabidopsis thaliana (59)
Rattus norvegicus (45)
Danio rerio (37)
Sus scrofa (24)
Bos taurus (24)
synthetic construct (23)
Oryza sativa (21)
Solanum lycopersicum (18)
Gallus gallus (16)
Saccharomyces cerevisiae (15)
Caenorhabditis elegans (13)
Ovis aries (12)
Triticum aestivum (10)
Medicago truncatula (8)
Equus caballus (8)
Cicer arietinum (7)
Vitis vinifera (7)
Anopheles gambiae (5)
Oryza sativa Indica Group (5)
Zika virus (4)
Daphnia magna (4)
Plasmodium falciparum 3D7 (4)
Aedes aegypti (4)
Brugia malayi (3)
Spodoptera frugiperda (3)
Lemna minor (2)
Neurospora crassa OR74A (2)

Organisms

Homo sapiens (1289)
Mus musculus (821)
Arabidopsis thaliana (56)
Rattus norvegicus (55)
Saccharomyces cerevisiae (38)
unidentified (37)
Oryza sativa (35)
Drosophila melanogaster (25)
Escherichia coli (25)
soil metagenome (25)
Bos taurus (24)
Danio rerio (20)
Sus scrofa (19)
Gallus gallus (19)
synthetic construct (16)
Cicer arietinum (15)
Solanum lycopersicum (15)
Canis lupus familiaris (14)
Severe acute respiratory syndrome coronavirus 2 (12)
Staphylococcus aureus (12)
Zea mays (11)
Bacteria (11)
Caenorhabditis elegans (10)
Mycobacterium tuberculosis (10)
Hordeum vulgare (9)
human metagenome (9)
plant metagenome (9)
human gut metagenome (9)
bioreactor metagenome (9)
wastewater metagenome (8)

Repository

ENA (8092)
geo (1659)
biostudies-arrayexpress (1056)
EGA (203)
pride (44)
dbGaP (16)
EVA (11)
NODE (10)
MetaboLights (5)
MassIVE (4)
iProX (3)
ExpressionAtlas (1)
GPMDB (1)
jPOST (1)

Tissue

Muscle (6)
Blood plasma (5)
Blood serum (5)
Cell culture (5)
Epithelial cell (5)
Brain (3)
Colon (3)
Embryonic stem cell (3)
Lung (2)
Saliva (2)
Bone marrow (1)
Breast (1)
Cell line (1)
Intervertebral disc (1)
Blood cell (1)
Cell suspension culture (1)
Colon epithelial cell (1)
Colonic epithelium (1)
Endothelial cell (1)
Endothelial colony forming cell (1)
Gametophyte (1)
Heart (1)
Kidney (1)
Lewis lung carcinoma cell (1)
Liver (1)
Plant cell (1)
Spleen (1)
Stem cell (1)
Venom (1)

Disease

Colorectal Neoplasms (16)
Neoplasms (3)
Colon cancer (2)
Disease free (2)
Normal (1)
Colorectal cancer and triple negative breast cancer patients (TNBC) who shown overexpression of fascin1 in the diagnostic biopsy tissue. (1)
Non-small cell lung cancer (NSCLC), colorectal cancer (CRC) (1)
Patients with histologically confirmed metastatic colorectal cancer (1)
Microbiome, Intestinal microbiota, Postmenopausal women without breast cancer, Breast cancer (1)
Malignant melanoma of skin (1)
Malignant neoplasm of stomach (1)
Carcinoma, Hepatocellular (1)
Lymphoma (1)
Malignant neoplasm of colon (1)
Carcinoma (1)
Gastrointestinal Neoplasms (1)
Colorectal cancer (1)
Not Available (1)
Acute myeloid leukemia (1)
Hepatocellular carcinoma (1)
Triple-receptor negative breast cancer (1)
Atopic dermatitis (1)
Brain cancer (1)
COVID-19 (1)
Ehlers-Danlos syndrome classic type 1 (1)
Human immunodeficiency virus infectious disease (1)
Lung carcinoma (1)
Multiple myeloma (1)
Ulcerative colitis (1)
Von Willebrand's disease 2 (1)

Technology Type

Mass Spectrometry (44)
Shotgun proteomics (18)
Illumina HiSeq 2000 (8)
Bottom-up proteomics (7)
Top-down proteomics (6)
Mass spectrometry (4)
Olink affinity proteomics (4)
Illumina HiSeq 2500 (3)
Affinity proteomics (3)
Affinity purification coupled with mass spectrometry proteomics (3)
Data-independent acquisition (3)
SWATH MS (3)
ILLUMINA, Illumina HiSeq 2500 (2)
Illumina HiSeq 2000, ILLUMINA (2)
Gel-based experiment (2)
SRM/MRM (2)
Illumina MiSeq, Illumina HiSeq 2500, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 4000, Illumina MiSeq (1)
Illumina MiSeq, ILLUMINA (1)
ILLUMINA, NextSeq 500 (1)
Illumina MiSeq, Illumina HiSeq 2500 (1)
Illumina HiSeq 1500 (1)
ILLUMINA, Illumina HiSeq 2000 (1)
Mass spectrometry assay (1)
Data-dependent acquisition (1)
DiaPASEF (1)
Immunopeptidomics (1)
Proteogenomics (1)

Instrument Platform

Illumina NovaSeq 6000 (116)
NextSeq 500 (74)
Illumina HiSeq 2500 (74)
Illumina HiSeq 4000 (49)
Illumina HiSeq 2000 (36)
Illumina MiSeq (36)
NextSeq 550 (32)
NextSeq 2000 (16)
Illumina HiSeq 1500 (11)
Illumina NovaSeq X (10)
Ion Torrent Proton (9)
- (6)
NA (5)
Ion Torrent PGM (4)
Illumina HiSeq 3000 (4)
Qubit 4.0 Fluorometer/ Agilen 5300 Fragment Analyzer (3)
Element AVITI (3)
Illumina Genome Analyzer II (3)
Illumina MiniSeq (3)
N/A (3)
BD Influx sorter (2)
Agilent Bravo NGS workstation, Microlab STAR automated liquid handler (Hamilton Robotics), PCR machine (MJ Research Peltier Thermal Cycler) (2)
FastPrep‑24 homogenizer (MP Biomedicals) (2)
Nanostring GeoMx spatial profiler (2)
See manuscript (2)
NucleoSpin RNA/Protein kit lysis buffer (350 µL per tube; Macherey‑Nagel). (2)
Dell PowerEdge R750; CPU: 2 × Intel Xeon Gold 6346 (32 Cores / 64 Threads); RAM: 188 GB (2)
Illumina Genome Analyzer IIx (2)
N/a (2)
Agilent NGS Workstation (2)

Publication Date

2013 (368)
2021 (290)
2022 (266)
2020 (253)
2023 (189)
2015 (171)
2019 (170)
2025 (164)
2018 (150)
2024 (142)
2014 (138)
2016 (130)
2017 (118)
2026 (117)
2012 (52)
2011 (31)
2010 (26)
2009 (3)
2008 (3)
2006 (2)

CHEBI ID

CHEBI:26271 (3)
CHEBI:25094 (3)
CHEBI:27570 (3)
CHEBI:18186 (3)
CHEBI:16811 (3)
CHEBI:28044 (3)
CHEBI:27266 (3)
CHEBI:29016 (3)
CHEBI:28997 (2)
CHEBI:18240 (2)
CHEBI:24266 (2)
CHEBI:17521 (2)
CHEBI:17460 (2)
CHEBI:18066 (2)
CHEBI:17172 (2)
CHEBI:17553 (2)
CHEBI:17822 (2)
CHEBI:15721 (2)
CHEBI:16680 (2)
CHEBI:16709 (2)
CHEBI:17287 (2)
CHEBI:17858 (2)
CHEBI:16040 (2)
CHEBI:17126 (2)
CHEBI:22660 (2)
CHEBI:22653 (2)
CHEBI:26986 (2)
CHEBI:15676 (2)
CHEBI:16708 (2)
CHEBI:28867 (2)

Metabolite Name

S-Adenosyl-homocysteine (2)
Creatine phosphate (2)
Uracil (2)
Valine (2)
Propionylcarnitine (2)
Thymine (2)
Thiamine (2)
Argininosuccinic acid (2)
Nicotinic acid (2)
Alpha-Ketoglutaric acid (2)
Pyridoxine (2)
Pantothenic acid (2)
Palmitoylcarnitine (2)
Methionine (2)
N-Acetylneuraminic acid (2)
Taurocholic acid (2)
Cis-Aconitic acid (2)
Asparagine (2)
Adenosine (2)
Guanine (2)
Cytosine (2)
Threonine (2)
Riboflavin (2)
Proline (2)
Adenine (2)
Cytidine (2)
Guanosine (2)
Creatinine (2)
Creatine (2)
Inosine (2)

First Public Date

2015 (877)
2014 (849)
2024 (775)
2020 (766)
2025 (713)
2023 (713)
2021 (691)
2022 (689)
2026 (516)
2019 (453)
2018 (363)
2017 (338)
2016 (239)
2013 (90)
2012 (13)
2011 (6)
2010 (1)

Classification

bacteria (144)
viruses (73)
protozoa (15)
fungi (14)
helminths (8)

Modification

2x(15)N labeled L-lysine (1)
4 (1)
4x(15)N labeled L-arginine (1)

Study status

Recruiting (17)
Not provided (7)
Active, not recruiting (2)
Not yet recruiting (2)
Completed (2)
Ongoing (1)

Study type

RNA-seq of coding RNA (454)
ChIP-seq (202)
RNA-seq of non coding RNA (67)
Transcription profiling by array (56)
DNA-seq (52)
Methylation profiling by high throughput sequencing (23)
RNA-seq of total RNA (22)
RNA-seq of coding RNA from single cells (21)
Other (16)
Animal - High-throughput sequencing (14)
Cell line - High-throughput sequencing (14)
CUT&RUN (11)
Human - High-throughput sequencing (10)
Comparative genomic hybridization by array (10)
MicroRNA profiling by high throughput sequencing (8)
Genotyping by high throughput sequencing (8)
ChIP-chip by array (7)
Spatial transcriptomics by high-throughput sequencing (7)
Bisulfite-seq (6)
High-throughput sequencing (5)
Hi-C (5)
Plant - High-throughput sequencing (4)
RIP-seq (4)
MicroRNA profiling by high-throughput sequencing (3)
Genotyping by array (3)
ATAC-seq (3)
Baseline (2)
ChIP-chip by tiling array (2)
4C (2)
Exome sequencing (2)

Release Date

2022 (1476)
2021 (1389)
2023 (1266)
2020 (1094)
2025 (971)
2024 (906)
2019 (852)
2018 (659)
2017 (592)
2016 (543)
2015 (519)
2013 (375)
2014 (367)
2026 (165)
2012 (144)
2011 (81)
2010 (40)
2009 (6)
2008 (3)
2006 (2)

Lab affiliation

Institute of Medical Microbiology, University of Zurich (6)
Alkahest Inc. (2)
Aalborg University, Department of Chemistry and Bioscience, Fredrik Bajers Vej 7H, 9220 Aalborg, Denmark (1)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (1)
Bio-organic chemistry, LIC, Leiden University, Einsteinweg 55, 2333CC, Leiden, The Netherlands (1)
Caris Science Inc (1)
Center for Proteomics and Metabolomics, Leiden University Medical Center (1)
Center for Research Innovation and Bioinformatics, Faculty of Medical Technology, Mahidol University, Nakhon Pathom, Thailand (1)
Computational Biology Division, Department of Integrative Biomedical Sciences, University of Cape Town, Cape Town, South Africa. (1)
Department of Biochemistry, Indian Institute of Science, Bangalore 560012 ph no. 08022932823 (1)
Department of Functional Genomics, Interfaculty Institute for Genetics and Functional Genomics, University Medicine Greifswald, Greifswald, Germany (1)
Department of Microbiology and Immunology, Seoul National University College of Medicine, Republic of Korea (1)
Department of Molecular Developmental Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Radboud University, Nijmegen, the Netherlands (1)
Department of Molecular Developmental Biology, Radboud Institute for Molecular Life Sciences (RIMLS), Nijmegen, the Netherlands (1)
Department of Molecular Medicine, The Scripps Research Institute, La Jolla, California 92037 United States (1)
Department of oncology UNIL CHUV Ludwig Institute for Cancer Research Lausanne Office B25A/04/94 Rue du Bugnon 25a, CH-1005 Lausanne (1)
Department of proteomics and signal transduction, max planck institute of biochemistry, Germany (1)
Division of Molecular Genetics, The Netherlands Cancer Institute, Plesmanlaan 121, 1066CX, Amsterdam, the Netherlands (1)
Erasmus MC Department of Neurology Clinical and Cancer Proteomics (1)
Functional Proteomics Lab, Faculty of Biology, University of Freiburg, Germany (1)
IRCCS Istituto G Gaslini (1)
King's British Heart Foundation Centre, King's College London, UK (1)
Laboratoire de Génétique Ophtalmologique, INSERM U1163, Institut Imagine, Paris, France (1)
Laboratorio de Proteomica e Aracnídeos, Diretoria de Pesquisa e Desenvolvimento, Fundação Ezequiel Dias - FUNED, Belo Horizonte, MG - Brazil (1)
Medical School of Nanjing University, China (1)
Parasitology Laboratory, Institute of Natural Resources and Agrobiology (IRNASA, CSIC). Cordel de Merinas, 40-52, 37008 Salamanca, Spain. (1)
Personalis Inc., Menlo Park, USA. (1)
Prof. Luigia Pazzagli, PhD. Professore Associato di Biochimica (BIO/10) Specialista in Biochimica e Biochimica Clinica, Dipartimento di Scienze Biomediche Sperimentali e Cliniche, Viale Morgagni 50, 50134 Firenze Tel. 0552751258 Mail. luigia.pazzagli@unifi.it (1)
Proteomics Group, Department of molecular hemastasis, Sanquin Research, Amsterdam, the Netherlands (1)
Research Unit of Translational Medicine, University of Oulu, Biocenter Oulu, University of Oulu, Oulu, Finland (1)

Location

China (11)
United States (5)
France (4)
Germany (3)
South Korea (2)
Italy (2)
Spain (2)
Hong Kong (1)
Indonesia (1)
Saudi Arabia (1)
Denmark (1)
Sweden (1)
Belgium (1)
Canada (1)
Netherlands (1)
Australia (1)
Japan (1)

Keyword

NGS (6)
Next Generation Sequencing (2)
Genetic Susceptibility (1)
Genomic Profiling (1)
Precision medicine (1)
Imipramine (1)
Laryngeal (1)
Hypopharyngeal (1)
Nasal Cavity (1)
Nasopharyngeal (1)
Oral Cavity (1)
Oropharyngeal (1)
Throat (1)
Lung Carcinoid (1)
Skin (1)
Basal (1)
Squamous (1)
Merkel Cell (1)
Pancreatic Neuroendocrine Tumor (1)
Small Intestine (1)
Penile (1)
Vaginal (1)
Vulvar (1)
Bone (1)
Rhabdomyosarcoma (1)
Soft Tissue Sarcoma (1)
Eye (1)
Spinal Cord (1)
Adrenal (1)
Pituitary (1)

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metagenomics NGS study

PRJEB42456 | ENA

CNV detection in targeted NGS panel data

The aim of this study was to compare copy-number-variation (CNV) detection methods for targeted NGS panel data in a clinical diagnostic setting. We present targeted NGS panel data from 170 samples that were processed using the TruSight(TM) Cancer (TSC) panel (Illumina, San Diego, CA, USA), which tar...

EGAS00001002481 | EGA

NGS RICU study 2024

PRJEB73552 | ENA

Candidatus Phytoplasma oryzae strain:NGS-S10

Candidatus Phytoplasma oryzae strain:NGS-S10 Genome sequencing and assembly

PRJNA243293 | ENA

NGS for profiling yersinia pestis MLVA

comparative analysis of whole genome amplified NGS and target enriched NGS for MLVA profiling of Yersinia pestis

PRJEB86049 | ENA

Metagenomic NGS data from birds_Exp03_2022

Metagenomic NGS data from birds_Exp03_2022 Raw sequence reads

PRJNA1028305 | ENA