Nguyen J J - OmicsDI

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Unknown (9718)
Proteomics (180)
Transcriptomics (110)
Genomics (88)
Metabolomics (38)
Other (2)
Models (1)
Genomic (1)

Organisms

Homo sapiens (137)
Allexis (136)
Arabidopsis thaliana (136)
Bos taurus (136)
Callinectes sapidus (136)
Drosophila melanogaster (136)
Entamoeba histolytica HM-1:IMSS-A (136)
Escherichia coli (136)
Homo sapiens (136)
Leishmania major strain Friedlin (136)
Listeria monocytogenes (136)
Medicago truncatula (136)
Meleagris gallopavo (136)
Mus musculus (38)
Arabidopsis thaliana (9)
Zea mays (4)
Syntrophus aciditrophicus SB (2)
cellular organisms (1)
Salmonella enterica subsp. enterica serovar Paratyphi A (1)
Saccharomyces uvarum (1)
Chlamydomonas reinhardtii (1)
Anopheles gambiae (1)
Staphylococcus aureus (1)
Oncorhynchus mykiss (1)
Glycine max (1)
Caenorhabditis elegans (1)
Pseudomonas aeruginosa (1)
Rattus norvegicus (1)
Drosophila melanogaster (1)
Plasmodium (1)

Repository

pride (136)
biostudies-arrayexpress (117)
EGA (80)
MassIVE (38)
MetaboLights (32)
GNPS (6)
jPOST (5)
GPMDB (2)
BioModels (1)
dbGaP (1)
PanoramaPublic (1)
ENA (1)

Tissue

Cell culture (29)
Epithelial cell (14)
Blood (11)
Cell suspension culture (8)
Lung (8)
Blood plasma (7)
Blood cell (6)
Brain (6)
Leukocyte (6)
Liver (5)
Heart (4)
Permanent cell line cell (4)
Bone marrow (3)
Egg (3)
Embryo (3)
Fibroblast (3)
Kidney (3)
Primary cell (3)
Skin (3)
T cell (3)
Whole body (3)
B cell (2)
Embryonic stem cell (2)
Hepatocyte (2)
Melanocyte (2)
Preadipocyte (2)
Retina (2)
Spleen (2)
Stromal cell of bone marrow (2)
HCT-116 cell (1)

Disease

Breast cancer (8)
Acute leukemia (6)
Disease free (4)
Lung adenocarcinoma (3)
Severe acute respiratory syndrome (3)
Not Available (2)
Colon cancer (2)
Glaucoma (2)
Melanoma (2)
Wounds and Injuries (2)
Autoimmune disorder (1)
Cerebral malaria (1)
Anemia (1)
Brain cancer (1)
Carcinoma (1)
Coronavirus infectious disease (1)
Cystinuria (1)
Diabetes mellitus (1)
Fibrolamellar carcinoma (1)
Human immunodeficiency virus infectious disease (1)
Hypochromic anemia (1)
Influenza (1)
Intermediate uveitis (1)
Lymphoma (1)
Malignant neoplasm of ovary (1)
Melanomatosis (1)
Mixed disorder as reaction to stress (1)
Multiple sclerosis (1)
Myotonic dystrophy type 1 (1)
Neuroblastoma (1)

Technology Type

Mass Spectrometry (136)
Shotgun proteomics (71)
Bottom-up proteomics (29)
Mass spectrometry (28)
Affinity purification coupled with mass spectrometry proteomics (20)
Data-dependent acquisition (16)
Gel-based experiment (10)
Data-independent acquisition (7)
Mass spectrometry assay (4)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
SRM/MRM (2)
Top-down proteomics (2)
Illumina CytoSNP, Illumina HumanOmni2.5, ILLUMINA, Illumina 450k, Illumina HiSeq 2000 (1)
Affymetrix/Illumina (1)
Illumina HiSeq 2500, ILLUMINA (1)
Illumina HiSeq 2000, Illumina MiSeq (1)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Illumina HiSeq 2500 (1)
Illumina MiSeq (1)
NMR spectroscopy (1)
MSE (1)
SWATH MS (1)

Instrument Platform

LTQ Orbitrap Velos (20)
Q Exactive (6)
Illumina NovaSeq 6000 (5)
Illumina HiSeq 2000 (3)
NextSeq 500 (3)
LTQ FT (3)
Orbitrap Eclipse (3)
Q Exactive Plus (3)
FUJIFILM BAS-5000 scanning hardware (2)
BAS-5000 [FUJIFILM] (2)
10x Genomics Chromium Controller (2)
5975C GC/MS(Agilent instrument model) (2)
6546 Q-TOF LC/MS (Agilent instrument model) (2)
LTQ Orbitrap XL (2)
QTRAP 6500 (2)
Instrument (2)
Orbitrap Fusion Lumos (2)
10X (1)
Octo MACS (1)
10X Genomics Chromium Single Cell Kit (1)
MA900, Sony (1)
10x Chromium Controller (1)
Spectronic Helios Alpha UV-Vis spectrophotometer (1)
NextSeq 550 (1)
Illumina HiSeq 2500 (1)
MaXis (1)
LTQ Velos (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion (1)
Q Exactive HF (1)

Publication Date

2023 (34)
2014 (32)
2025 (29)
2022 (29)
2010 (25)
2021 (21)
2020 (19)
2024 (17)
2011 (16)
2018 (14)
2019 (14)
2026 (13)
2015 (11)
2012 (11)
2013 (10)
2017 (9)
2016 (7)
2008 (7)
2009 (6)
2007 (6)
2004 (3)
2005 (2)

UNIPROT ID/AC

P16104 (1)
Q93009 (1)
Q06587 (1)
P35226 (1)

CHEBI ID

CHEBI:17895 (6)
CHEBI:28865 (6)
CHEBI:16196 (5)
CHEBI:16359 (5)
CHEBI:15756 (5)
CHEBI:16828 (5)
CHEBI:30769 (5)
CHEBI:15611 (4)
CHEBI:17126 (4)
CHEBI:16811 (4)
CHEBI:18257 (4)
CHEBI:16708 (4)
CHEBI:28790 (4)
CHEBI:16566 (4)
CHEBI:17568 (4)
CHEBI:17750 (4)
CHEBI:73024 (4)
CHEBI:15891 (4)
CHEBI:55328 (4)
CHEBI:29016 (4)
CHEBI:17964 (4)
CHEBI:16027 (4)
CHEBI:17191 (4)
CHEBI:18344 (4)
CHEBI:35038 (3)
CHEBI:18305 (3)
CHEBI:17521 (3)
CHEBI:17033 (3)
CHEBI:16113 (3)
CHEBI:16450 (3)

Metabolite Name

L-Tryptophan (4)
Tris(2-butoxyethyl) phosphate (3)
Succinate (3)
Uracil (3)
4-Pyridoxic acid (3)
Taurocholic acid (3)
Cholic acid (3)
Adenosine (3)
Guanine (3)
Palmitic acid (3)
Oleic acid (3)
Adenine (3)
L-Tyrosine (3)
L-Phenylalanine (3)
PI(18:1/18:2) (2)
PI(16:0/18:2) (2)
Dibutyl phthalate (DBP) (2)
Lyso-PC(16:0) (2)
Alpha-linolenic acid|linolenic acid|(9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (2)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
Guaiacol sulfate (2)
Cholic acid (2)
Theophylline (2)
Theobromine (2)
Cotinine (2)
Cortisol (2)
4-vinylphenol sulfate (2)
Caffeine (2)

IsPrivate

False (1)

First Public Date

2025 (1)

Modelling Approach

Ordinary differential equation model (1)

Modification

15.994915 (3)
57.021464 (3)
-17.026549 (2)
-18.010565 (2)
42.010565 (2)
2x(15)N labeled L-lysine (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
4x(15)N labeled L-arginine (1)
4x(2)H labeled dimethylated residue (1)

Study type

Transcription profiling by array (57)
RNA-seq of coding RNA (19)
ChIP-chip by tiling array (10)
Unknown experiment type (8)
RNA-seq of coding RNA from single cells (8)
ChIP-seq (6)
Comparative genomic hybridization by array (4)
Other (3)
Animal - High-throughput sequencing (1)
DNA-seq (1)

Release Date

2025 (1235)
2023 (1141)
2024 (1116)
2022 (1114)
2021 (1060)
2020 (853)
2019 (575)
2018 (527)
2017 (402)
2016 (366)
2015 (256)
2014 (231)
2026 (189)
2013 (159)
2012 (147)
2011 (125)
2010 (108)
2009 (71)
2008 (47)
2007 (43)
2005 (20)
2006 (19)
2004 (9)
2003 (7)
2002 (5)
2001 (5)
2000 (2)
1999 (2)

Lab affiliation

Institute of Biochemistry II, Faculty of Medicine, Goethe University, Frankfurt, Germany (4)
Program in Molecular Medicine, UMass Chan Medical School (2)
Protim Irset Inserm U1085 (2)
Seoul National University (2)
Shiga University of Medical Science (2)
University of Arkansas (2)
University of Missouri-Columbia (2)
1 Department of Immunology, Interfaculty Institute for Cell Biology, Tübingen, Germany 2 German Cancer Consortium (DKTK), DKFZ Partner Site Tübingen, Tübingen, Germany (1)
Assistant professor, School of Biological Sciences, Seoul National University. (1)
Associate Professor Tracy Putoczki The Walter and Eliza Hall Institute of Medical Research Australia (1)
Biomedicine Discovery Institute, Monash University, Clayton, Australia. Department of Biochemistry and Molecular Biology, Monash University, Clayton, Australia (1)
CEA-Marcoule, ProGenoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Ceze, France (1)
CRBM institute, UMR5237 CNRS, France (1)
CSIC/UAB Proteomics Laboratory, IIBB-CSIC, Barcelona, Spain (1)
Cancer Program, Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Melbourne, VIC, 3800, Australia (1)
Cancer Science Institute of Singapore (CSI), National University of Singapore (NUS) (1)
Cell Biology, Neurobiology and Biophysics, Department of Biology, Faculty of Science, Utrecht University, The Netherlands (1)
Center for Integrative Genomics University of Lausanne Quartier Sorge 1015 Lausanne Switzerland (1)
Centre for Blood Research (1)
Cincinnati Children’s Hospital Medical Center (1)
DZNE Munich Neuroproteomics Feodor-Lynen Str. 17 81377 Munich Germany (1)
Depart of Biology University of Rochester (1)
Department of Anatomy and Developmental Biology, Australian Regenerative Medicine Institute, Monash University, Australia (1)
Department of Biochemistry and Molecular Biology & Infection and Immunity Program, Biomedicine Discovery Institute, Monash University, Clayton, Victoria 3800, Australia (1)
Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Clayton 3800, Victoria, Australia (1)
Department of Biochemistry and Molecular Genetics, School of Medicine, University of Colorado, Aurora, CO, USA (1)
Department of Biochemistry, Monash University, Clayton,3168, Australia (1)
Department of Biochemistry. University of Wisconsin-Madison (1)
Department of Biological Sciences, National University of Singapore, 14 Science Drive 4, Singapore, 117543 (1)
Department of Cardiovascular and Metabolic Sciences, Lerner Research Institute, Cleveland Clinic Foundation, Cleveland, OH 44195, USA (1)

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Nervisides I-J: Unconventional Side-Chain-Bearing Cycloartane Glycosides from Nervilia concolor.

Not available

S-EPMC6681409 | biostudies-literature

A Novel Statin Compound from Monacolin J Produced Using CYP102A1-Catalyzed Regioselective C-Hydroxylation.

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S-EPMC8541633 | biostudies-literature

How J-chain ensures the assembly of immunoglobulin IgM pentamers.

Not available

S-EPMC11729874 | biostudies-literature

Transcription profiling of genetically cerebral malaria-resistant (CM-R) and cerebral malaria-susceptible (CM-S) mouse strains

Gene expression patterns were investigated in well-defined genetically cerebral malaria-resistant (CM-R) and cerebral malaria-susceptible (CM-S) mouse strains. cDNA microarrays were used to search for differentially expressed genes in mouse brain. Four mouse strains, known to differ in susceptibilit...

ORGANISM(S): Mus musculus

2005-06-30 | E-MEXP-370 | biostudies-arrayexpress

How J-chain ensures the assembly of immunoglobulin IgM pentamers

Not available

S-SCDT-10_1038-S44318-024-00317-9 | biostudies-other

Genome-Wide Identification and Analysis of the Hsp40/J-Protein Family Reveals Its Role in Soybean (Glycine max) Growth and Development.

Not available

S-EPMC10298129 | biostudies-literature

Functional diversification of hsp40: distinct j-protein functional requirements for two prions allow for chaperone-dependent prion selection.

Not available

S-EPMC4109904 | biostudies-literature

First record of Scincellafansipanensis Okabe, Motokawa, Koizumi, Nguyen, Nguyen & Bui, 2024 (Squamata, Scincidae) from China.