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TranscriptomicsTranscription profiling of yeast wild type, set1delta and swd3delta SK1 diploid cells in response to sporulation conditions, in order to determine the influence of histone methylation on the meiotic transcriptome
We analysed the global gene expression profile of wild-type, set1delta and swd3delta Saccharomyces cerevisiae SK1 diploid cells in response to sporulation conditions, in order to determine the influence of histone methylation on the meiotic transcriptome.
ORGANISM(S): Saccharomyces cerevisiae 
2004-05-05 | E-MEXP-41 | biostudies-arrayexpress
ModelsLeloup1999_CircClock
This model originates from BioModels Database: A Database of Annotated Published Models. It is copyright (c) 2005-2009 The BioModels Team.For more information see the terms of use.To cite BioModels Database, please use Le Novère N., Bornstein B., Broicher A., Courtot M., Donizelli M., Dharuri H., Li...
2024-09-02 | BIOMD0000000021 | BioModels
TranscriptomicsResponse of Synechococcus sp. WH7803 LL- and and HL- acclimated cells to oxidative stress (HP and MV)
To identify the respective roles of light and ROS in the photoinhibition process and detect a possible light-driven tolerance to oxidative stress, we compared the transcriptomic responses of Synechococcus sp. WH7803 acclimated to low (LL) or high light (HL) to oxidative stress, induced by hydrogen p...
ORGANISM(S): Synechococcus sp. WH7803 
2011-08-18 | E-MTAB-681 | biostudies-arrayexpress
TranscriptomicsMicroarray on cell populations sorted from the imiquimod-treated skin
The imiquimod model is used to induce the skin production of IL-22 and to characterize the cells that produce IL-22 in the skin after inflammatory stimulus. This experiment is performed on skin of C57Bl/6 mice treated with imiquimod to induce psoriasis-like lesions. After 5 days of imiquimod treatme...
ORGANISM(S): Mus musculus 
2016-08-09 | E-MTAB-4453 | biostudies-arrayexpress
TranscriptomicssncRNAs in E. faecalis V538
Small non coding RNA molecules (sncRNAs) are key mediators of virulence and stress inducible gene expressions in some pathogens. In this work we identify sncRNAs in the Gram positive opportunistic pathogen Enterococcus faecalis. Enterococcus faecalis. We characterized 11 sncRNAs by tiling microarray...
ORGANISM(S): Enterococcus faecalis V583 
2011-04-21 | E-GEOD-28741 | biostudies-arrayexpress
TranscriptomicsTranscription profiling by array of Prochlorococcus marinus PCC9511 subjected to ultraviolet stress
Ultraviolet stress in light/dark synchronized cells of the marine cyanobacterium Prochlorococcus marinus PCC9511
ORGANISM(S): Prochlorococcus marinus 
2010-08-03 | E-TABM-1028 | biostudies-arrayexpress
TranscriptomicsSpatial transcriptomics data from the lungNENomics cohort of lung neuroendocrine tumours
This dataset contains spatial transcriptomics data of four lung neuroendocrine tumours (lung NETs), a rare and understudied type of lung cancer. The dataset consists of raw sequencing data, metadata, and gene expression matrices. It is part of the lungNENomics project. See https://doi.org/10.5281/z...
ORGANISM(S): Homo sapiens 
2026-05-22 | E-MTAB-17055 | biostudies-arrayexpress
GenomicsThreonine-4 of Mammalian RNA Polymerase II CTD is Targeted by Polo-like Kinase-3 and Required for Transcriptional Elongation
Eukaryotic RNA polymerase II (Pol II) has evolved an array of heptad repeats with the consensus sequence Tyr1-Ser2-Pro3-Thr4-Ser5-Pro6-Ser7 at the carboxy-terminal domain (CTD) of the large subunit (Rpb1). Differential phosphorylation of Ser2, Ser5, and Ser7 in the 5M-bM-^@M-^Y and 3M-bM-^@M-^Y regi...
ORGANISM(S): Homo sapiens 
2012-06-04 | E-GEOD-37519 | biostudies-arrayexpress
TranscriptomicsCapStarr-seq: a high-throughput method for quantitative assessment of enhancer activity in mammals
Here we developed CapStarr-Seq, a novel high-throughput strategy to quantitatively assess enhancer activity in mammals. This approach couples capture of regions of interest to previously developed Starr-seq technique. Extensive assessment of CapStarr-seq demonstrated accurate quantification of enhan...
ORGANISM(S): Mus musculus 
2015-04-09 | E-GEOD-60029 | biostudies-arrayexpress
TranscriptomicsRNA-seq and genome-wide CRISPRi and Tn-seq analyses of BVL3572S-treated Mycobacterium tuberculosis H37Rv
(i) RNA-seq of M. tuberculosis H37Rv cultures grown in the presence of BVL3572S for 6 h compared to untreated controls. (ii) Genome-wide M. tuberculosis H37Rv CRISPRi libraries were grown in the presence of ATc for 5 days prior to drug exposure. Cultures were treated with sub-MIC BVL3572S concentra...
ORGANISM(S): Mycobacterium tuberculosis H37Rv 
2026-04-20 | E-MTAB-16773 | biostudies-arrayexpress
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