Niegowska Magdalena M

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Transcriptomics (3)
Genomics (1)
Metabolomics (1)

Organisms

Arabidopsis thaliana (4)

Repository

biostudies-arrayexpress (4)
MetaboLights (1)

Technology Type

Mass spectrometry (1)

Instrument Platform

Illumina HiSeq 2000 (1)
5975C Series GC/MSD (Agilent) (1)

Publication Date

2015 (4)
2017 (1)

CHEBI ID

CHEBI:36405 (1)
CHEBI:25097 (1)
CHEBI:24848 (1)
CHEBI:28976 (1)
CHEBI:28260 (1)
CHEBI:24266 (1)
CHEBI:22599 (1)
CHEBI:17992 (1)
CHEBI:29888 (1)
CHEBI:16217 (1)
CHEBI:16113 (1)
CHEBI:17553 (1)
CHEBI:17822 (1)
CHEBI:15611 (1)
CHEBI:26271 (1)
CHEBI:25094 (1)
CHEBI:15978 (1)
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CHEBI:22660 (1)
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CHEBI:28757 (1)
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CHEBI:26986 (1)
CHEBI:17234 (1)
CHEBI:18257 (1)
CHEBI:24898 (1)
CHEBI:25017 (1)
CHEBI:30832 (1)
CHEBI:17113 (1)
CHEBI:15428 (1)

Metabolite Name

No match: 1030.08 (1)
No match: 2824.20 (1)
No match: 1419.85 (1)
No match: 2955.81 (1)
No match: 2560.29 (1)
No match: 1725.47 (1)
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No match: 2058.53 (1)
No match: 2937.35 (1)
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No match: 2578.39 (1)
No match: 1909.62 (1)
No match: 1898.87 (1)
No match: 2510.90 (1)
No match: 2590.17 (1)
No match: 2629.75 (1)
No match: 1289.60 (1)
No match: 1308.63 (1)
No match: 1249.16 (1)
No match: 2520.76 (1)
No match: 1350.74 (1)
No match: 1054.48 (1)
No match: 1693.92 (1)
No match: 1888.53 (1)
No match: 2022.86 (1)
No match: 2028.75 (1)
No match: 1604.75 (1)
No match: 1003.87 (1)
No match: 1366.52 (1)
No match: 1389.34 (1)

Study type

Transcription profiling by tiling array (2)
ChIP-chip by array (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2015 (4)

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A microfluidics-based in vitro model of the gastrointestinal human-microbe interface

Changes in the human gastrointestinal microbiome are associated with several diseases. To infer causality, experiments in representative models are essential, but widely used animal models exhibit limitations. Here we present a modular, microfluidics-based model (HuMiX, human–microbial crosstalk), w...

2017-07-28 | MTBLS328 | MetaboLights

Analysis of genomic distribution of three linker histone variants in Arabidopsis under normal and low light conditions, by ChIP-chip.

Linker histones (H1s) are conserved and ubiquitous structural components of eukaryotic chromatin. Multiple non-allelic variants of H1 co-exist in animals and plants, differ in their DNA/nucleosome binding properties and have been implicated in the control of genetic programs during development and d...

ORGANISM(S): Arabidopsis thaliana

2015-07-29 | E-MTAB-2804 | biostudies-arrayexpress

Bisulfite sequencing of wild type Arabidopsis plants and H1 mutants

Experiment was performed to assess the effect of H1 histones knock-out on DNA methylation under control conditions and a role of H1.3 in maintaining stress-induced menthylation response.

ORGANISM(S): Arabidopsis thaliana

2015-01-21 | E-MTAB-2807 | biostudies-arrayexpress

Arabidopsis response to four days of limited light treatment -

Experiment was designed to assess the transcriptomic response of wild type Arabidopsis plants (Ler) to 4 days of low light conditions.

ORGANISM(S): Arabidopsis thaliana

2015-07-29 | E-MTAB-2803 | biostudies-arrayexpress

Arabidopsis response to combined low light and drought conditions - transcriptomic profiling

Experiment was designed to compare the transcriptomic response of wild type and h1.3 Arabidopsis plants (Ler) to combined low light and drought conditions. H1.3 is highly upregulated by these experimental conditions

ORGANISM(S): Arabidopsis thaliana

2015-03-31 | E-MTAB-2806 | biostudies-arrayexpress

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