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TranscriptomicsTranscriptional profiling of intestinal tissue samples from germ-free and conventionally raised mice which are either wild-type or Myd88-/-
Whole-transcriptome survey of gene expression differences between germ-free (GF) and conventionally raised (CONV-R) mice. To assess the role of toll-like receptor signalling, both wild-type and Myd88 -/- mice were used. Four different tissues were harvested from 20 mice (5 WT CONV-R, 5 Myd88 -/- CON...
ORGANISM(S): Mus musculus 
2011-12-08 | E-GEOD-17438 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of S. cerevisiae response to nitrogen limitation in chemostat culture
Zinc is indispensable for the catalytic activity and structural stability of many proteins, and its deficiency can have severe consequences for microbial growth in natural and industrial environments. For example, Zn depletion in wort negatively affects beer fermentation and quality. Several studies...
ORGANISM(S): Saccharomyces cerevisiae 
2008-06-15 | E-GEOD-8089 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of S. cerevisiae to zinc limitation in chemostat cultures
Zinc is indispensable for the catalytic activity and structural stability of many proteins, and its deficiency can have severe consequences for microbial growth in natural and industrial environments. For example, Zn depletion in wort negatively affects beer fermentation and quality. Several studies...
ORGANISM(S): Saccharomyces cerevisiae 
2008-06-15 | E-GEOD-8035 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of S. cerevisiae response to carbon limitation in aerobic chemostat cultures
Zinc is indispensable for the catalytic activity and structural stability of many proteins, and its deficiency can have severe consequences for microbial growth in natural and industrial environments. For example, Zn depletion in wort negatively affects beer fermentation and quality. Several studies...
ORGANISM(S): Saccharomyces cerevisiae 
2008-06-15 | E-GEOD-8088 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of S. cerevisiae to investigate formaldehyde as source of free-energy during growth on glucose
Previously, it has been demonstrated that formate can be utilized by Saccharomyces cerevisiae as additional energy source using cells grown in a glucose-limited chemostat. Here, we investigated utilization of formaldehyde as co-substrate. Since endogenous formaldehyde dehydrogenase activities were i...
ORGANISM(S): Saccharomyces cerevisiae 
2008-10-18 | E-GEOD-8902 | biostudies-arrayexpress
ModelsMardinoglu2015 - Tissue-specific genome-scale metabolic network - White fat
Mardinoglu2015 - Tissue-specific genome-scale metabolic network - White fat This model is described in the article: The gut microbiota modulates host amino acid and glutathione metabolism in mice. Mardinoglu A, Shoaie S, Bergentall M, Ghaffari P, Zhang C, Larsson E, Bäckhed F, N...
2015-11-04 | MODEL1509220026 | BioModels
ModelsMardinoglu2015 - Tissue-specific genome-scale metabolic network - Brain cortex
Mardinoglu2015 - Tissue-specific genome-scale metabolic network - Brain cortex This model is described in the article: The gut microbiota modulates host amino acid and glutathione metabolism in mice. Mardinoglu A, Shoaie S, Bergentall M, Ghaffari P, Zhang C, Larsson E, Bäckhed F...
2015-11-04 | MODEL1509220013 | BioModels
ModelsMardinoglu2015 - Tissue-specific genome-scale metabolic network - Embryonic tissue
Mardinoglu2015 - Tissue-specific genome-scale metabolic network - Embryonic tissue This model is described in the article: The gut microbiota modulates host amino acid and glutathione metabolism in mice. Mardinoglu A, Shoaie S, Bergentall M, Ghaffari P, Zhang C, Larsson E, Bäckh...
2015-11-03 | MODEL1509220001 | BioModels
ModelsMardinoglu2015 - Tissue-specific genome-scale metabolic network - Jejunum
Mardinoglu2015 - Tissue-specific genome-scale metabolic network - Jejunum This model is described in the article: The gut microbiota modulates host amino acid and glutathione metabolism in mice. Mardinoglu A, Shoaie S, Bergentall M, Ghaffari P, Zhang C, Larsson E, Bäckhed F, Nie...
2015-11-04 | MODEL1509220007 | BioModels
ModelsMardinoglu2015 - Tissue-specific genome-scale metabolic network - Thymus
Mardinoglu2015 - Tissue-specific genome-scale metabolic network - Thymus This model is described in the article: The gut microbiota modulates host amino acid and glutathione metabolism in mice. Mardinoglu A, Shoaie S, Bergentall M, Ghaffari P, Zhang C, Larsson E, Bäckhed F, Niel...
2015-11-04 | MODEL1509220019 | BioModels
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