Nielsen Finn F - OmicsDI

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Unknown (8)
Transcriptomics (2)
Proteomics (2)
Metabolomics (1)

Organisms

Alphavirus (2)
Anemia (2)
Betaherpesvirinae (2)
Brassica oleracea var. oleracea (2)
Cowpox virus (2)
Coxsackievirus (2)
Cytomegalovirus (2)
Dengue virus (2)
EFO:0001352 (2)
Filoviridae (2)
Hepatitis B virus (2)
Human alphaherpesvirus 1 (2)
Human betaherpesvirus 5 (2)
Human immunodeficiency virus (2)
Human immunodeficiency virus 1 (2)
Human immunodeficiency virus 2 (2)
Influenza A virus (2)
Influenza C virus (2)
Japanese encephalitis virus group (2)
Lyssavirus rabies (2)
Monkeypox virus (2)
Nostoc sp. PCC 7120 = FACHB-418 (2)
Oropouche virus (2)
Orthopoxvirus (2)
Orthopoxvirus vaccinia (2)
Rattus (2)
Staphylococcus aureus (2)
Tick-borne encephalitis virus (2)
Drosophila melanogaster (1)
Homo sapiens (1)

Repository

biostudies-arrayexpress (2)
pride (2)
MetaboLights (1)

Tissue

Cerebrospinal fluid (2)

Technology Type

Mass Spectrometry (2)
Shotgun proteomics (2)
Mass spectrometry (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2015 (1)
2006 (1)
2023 (1)
2022 (1)
2021 (1)

CHEBI ID

CHEBI:181874 (1)
CHEBI:195266 (1)
CHEBI:195267 (1)
CHEBI:44237 (1)
CHEBI:182784 (1)
CHEBI:195268 (1)
CHEBI:171846 (1)
CHEBI:143757 (1)
CHEBI:166710 (1)
CHEBI:35038 (1)
CHEBI:16312 (1)
CHEBI:26756 (1)
CHEBI:167961 (1)
CHEBI:173138 (1)
CHEBI:68947 (1)
CHEBI:89234 (1)
CHEBI:59265 (1)
CHEBI:139138 (1)
CHEBI:173703 (1)
CHEBI:16755 (1)
CHEBI:34494 (1)
CHEBI:16610 (1)
CHEBI:16359 (1)
CHEBI:80774 (1)
CHEBI:28088 (1)
CHEBI:4676 (1)
CHEBI:36378 (1)
CHEBI:28865 (1)
CHEBI:27432 (1)

Metabolite Name

NCGC00168953-02_C47H76O17_(3beta,5xi,9xi,22beta)-22,24-Dihydroxyolean-12-en-3-yl 6-deoxy-alpha-L-mannopyranosyl-(1->2)-alpha-L-arabinopyranosyl-(1->2)-beta-D-glucopyranosiduronic acid (1)
Sodium taurochenodeoxycholate (1)
(R)-4-((3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-3,7,12-trihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
(R)-4-((3R,4R,5S,8S,9S,10R,13R,14S,17R)-3,4-dihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
3beta-Hydroxy-5-cholenoic acid (1)
13-Keto-9Z,11E-octadecadienoic acid (1)
Pentapropylene glycol (1)
3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanic acid (1)
Heptapropylene glycol (1)
Delta-Undecalactone (1)
N-Butylbenzenesulfonamide (1)
Alpha-linolenic acid|linolenic acid|(9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid (1)
Soyasaponin Ba (1)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (1)
Chenodeoxycholic acid (1)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (1)
Tris(2-butoxyethyl) phosphate (1)
Cholic acid (1)
Tauroursodeoxycholic acid (1)
Taurohyodeoxycholic acid (1)
Palmitelaidic acid (1)
2,6-Di-tert-butyl-4-hydroxymethylphenol (1)
Chenodeoxycholic acid (1)
Genistein (1)
Trans-EKODE-(E)-Ib (1)
Stercobilin (1)
Taurocholic acid (1)
Cholic acid (1)
9(10)-EpOME (1)
Spermidine (1)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (1)
RNA-seq of coding RNA (1)

Release Date

2023 (5)
2015 (2)
2006 (1)
2022 (1)
2012 (1)

Lab affiliation

Martin R. Larsen's Group, PR Group, Biochemistry and Molecular Biology, University of Southern Denmark, Odense, Denmark (2)

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Molecular markers in the CSF proteome differentiate neuroinflammatory diseases

Manuscript "Molecular markers in the CSF proteome differentiate neuroinflammatory diseases" by Maria L. Elkjaer Arkadiusz Nawrocki, Tim Kacprowski, Anja Hviid Simonsen, Romain Marignier, Tobias Sejbaek, Helle H. Nielsen, Lene Wermuth, Peter Høgh, Finn Sellebjerg, Richard Reynolds, Jan Baumbach, Mart...

ORGANISM(S): Homo sapiens (Human)

2021-02-22 | PXD017643 | Pride

Molecular markers in the CSF proteome differentiate neuroinflammatory diseases

ORGANISM(S): Homo sapiens (Human)

2022-08-08 | PXD017681 | Pride

Human csf Multiple sclerosis Proteomics

Drosophila Imp iCLIP identifies an RNA assemblage co-ordinating F-actin formation

In this study, we employed a combination of RIP-seq and short- and long-wave iCLIP technologies to identify transcripts associated with cytoplasmic RNPs containing the RNA-binding protein Drosophila Imp. We also made a Imp knockdown vs luciferase control experiment. Two biological iCLIP-seq, as well...

ORGANISM(S): Drosophila melanogaster

2015-05-27 | E-GEOD-62997 | biostudies-arrayexpress

The Influence of Regiochemistry on the Performance of Organic Mixed Ionic and Electronic Conductors.

Not available

S-EPMC10962556 | biostudies-literature

The Influence of Regiochemistry on the Performance of Organic Mixed Ionic and Electronic Conductors.

Not available

S-EPMC10962546 | biostudies-literature

Transcription profiling of biopsies from the descending colon of Crohns disease patients

Biopsies from the descending colon were obtained colonoscopically from 46 Crohn's disease patients (33 from areas without inflammation and 18 from inflamed areas). Gene profiling analyses were performed using Human Genome U133 Plus 2.0 GeneChip Array. Hybridization data were analyzed with dChip soft...

ORGANISM(S): Homo sapiens

2006-11-06 | E-TABM-118 | biostudies-arrayexpress

Interplay between Side Chain Density and Polymer Alignment: Two Competing Strategies for Enhancing the Thermoelectric Performance of P3HT Analogues.

Not available

S-EPMC10653083 | biostudies-literature

Targeting Human Cancer by a Glycosaminoglycan Binding Malaria Protein.

Not available

S-EPMC4790448 | biostudies-literature

Holo omic investigation of host and microbe in broiler chicken (HoloFood Trial 1/2/3)

Chicken farming is critical for future food security, yet there is still a need for improving animal welfare and optimised feeding strategies. HoloFood will explore the interaction and impact of the microbiome together with the host (animal) in response to different feeding strategies already imp...

2023-06-13 | MTBLS6988 | MetaboLights

Efficacy and Safety of NVX-CoV2373 in Adults in the United States and Mexico.

Not available

S-EPMC8693692 | biostudies-literature

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OmicsDI is part of the ELIXIR infrastructure

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