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Unknown
(540820)
Genomics
(30892)
Transcriptomics
(27829)
Proteomics
(10956)
Metabolomics
(5112)
Clinical
(2494)
Other
(915)
Methylation profiling
(447)
Models
(443)
Genomic
(326)
Multiomics
(249)
Organisms
Homo sapiens
(14587)
Mus musculus
(8144)
Saccharomyces cerevisiae
(766)
Bos taurus
(250)
Escherichia coli
(241)
Plasmodium falciparum
(54)
Solanum tuberosum
(39)
Xenopus laevis
(35)
Mycobacterium tuberculosis H37Rv
(31)
cellular organisms
(30)
Oryctolagus cuniculus
(25)
Neurospora crassa
(23)
Metazoa
(13)
Halobacterium salinarum
(9)
Cavia porcellus
(9)
Mus
(7)
Severe acute respiratory syndrome coronavirus 2
(5)
Clostridioides difficile 630
(4)
Rattus
(3)
Eukaryota
(2)
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Drosophila
(2)
Plasmodium falciparum K1
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Plasmodium falciparum NF54
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Severe acute respiratory syndrome-related coronavirus
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Alphainfluenzavirus
(1)
Blattabacteriaceae
(1)
Lactococcus cremoris subsp. cremoris MG1363
(1)
Human immunodeficiency virus
(1)
11103
(1)
Organisms
Homo sapiens
(6801)
Mus musculus
(4101)
soil metagenome
(582)
Rattus norvegicus
(507)
Saccharomyces cerevisiae
(305)
Arabidopsis thaliana
(299)
Drosophila melanogaster
(209)
Danio rerio
(183)
Bos taurus
(132)
Escherichia coli
(121)
Sus scrofa
(107)
Oryza sativa
(98)
Caenorhabditis elegans
(92)
peat metagenome
(80)
root metagenome
(78)
Panicum virgatum
(67)
riverine metagenome
(65)
leaf litter metagenome
(60)
Gallus gallus
(58)
Canis lupus familiaris
(58)
Macaca mulatta
(55)
Medicago truncatula
(53)
sediment metagenome
(48)
Schizosaccharomyces pombe
(45)
human gut metagenome
(44)
Sorghum bicolor
(44)
bioreactor metagenome
(43)
Zea mays
(42)
Mycobacterium tuberculosis
(40)
rhizosphere metagenome
(39)
Repository
ENA
(27005)
biostudies-arrayexpress
(21125)
geo
(10567)
pride
(6365)
MassIVE
(4270)
GNPS
(3689)
MetaboLights
(1253)
EGA
(1144)
BioModels
(420)
dbGaP
(326)
iProX
(276)
LINCS
(228)
MetabolomicsWorkbench
(166)
jPOST
(143)
PanoramaPublic
(62)
PeptideAtlas
(38)
GPMDB
(27)
NODE
(26)
EVA
(21)
PAXDB
(20)
Cell Collective
(11)
ExpressionAtlas
(6)
FAIRDOMHub
(6)
PMR
(6)
Tissue
Blood
(47)
Cultured cells
(9)
Bacterial cells
(7)
Lung
(6)
Liver
(6)
Brain
(5)
Feces
(5)
Pancreas
(4)
Unspecified
(4)
Yeast cells
(4)
Plant
(4)
Macrophages
(4)
Urine
(4)
Cells
(3)
Fibroblast cells
(3)
Colon
(3)
HeLa cells
(3)
Spleen
(3)
Optic nerve
(2)
Neurons
(2)
Adipose tissue
(2)
Glioma cells
(2)
Intestine
(2)
Heart
(2)
Cecum
(2)
Kidney
(2)
Muscle
(2)
T-cells
(2)
Standard phosphatidylcholines
(1)
Wastewater
(1)
Disease
Breast cancer
(159)
Normal
(88)
Alzheimer's disease
(55)
Melanoma
(40)
COVID-19
(37)
Glioblastoma
(35)
Parkinson's disease
(30)
Lung cancer
(27)
Multiple myeloma
(24)
Neuroblastoma
(24)
Prostate cancer
(11)
Osteosarcoma
(9)
Adenocarcinoma
(7)
Reference
(6)
Central nervous system cancer
(6)
Rheumatoid arthritis
(5)
Squamous cell carcinoma
(4)
Glioblastoma multiforme
(4)
Colorectal adenocarcinoma
(4)
Glioma
(3)
Acute lymphoblastic leukemia
(3)
Hypersensitivity reaction type II disease
(2)
Neurodegenerative disease
(2)
Conditional Kras and p53 mutation induced soft tissue sarcoma
(1)
Inflammatory bowel disease
(1)
Cholesterol ester storage disease
(1)
Human immunodeficiency virus infectious disease
(1)
Glucocorticoid-remediable aldosteronism
(1)
Leishmaniasis
(1)
Cancer
(1)
Technology Type
Illumina HiSeq 2000
(40)
Illumina Genome Analyzer II
(12)
Illumina HiSeq 2500
(10)
ILLUMINA, Illumina HiSeq 2000
(6)
Illumina HiSeq 2000, ILLUMINA
(6)
Illumina HiSeq 2500, ILLUMINA
(5)
ILLUMINA, Illumina HiSeq 2500
(4)
Illumina_450K
(2)
Illumina HiSeq 2000, ILLUMINA, Illumina HiSeq 2500
(2)
Illumina HiSeq 2500, Illumina HiSeq 2000
(2)
Illumina Genome Analyzer II, Illumina HiSeq 2000
(2)
Illumina MiSeq
(2)
ILLUMINA, Low Pass Whole Genome Sequencing (LP-WGS), Illumina NovaSeq 6000, Illumina Genome Analyzer II, SNP array
(1)
Illumina MiSeq, Illumina HiSeq 2000, ILLUMINA
(1)
Illumina HiSeq 2500, ILLUMINA, Affymetrix GeneChip Scanner 3000 7g
(1)
Illumina MiSeq, Illumina HiSeq 2500, ILLUMINA
(1)
Illumina HumanCoreExome-24 array
(1)
Illumina HiSeq 2000, ILLUMINA, Affymetrix SNP 6.0
(1)
NextSeq 500, Illumina HiSeq 4000, ILLUMINA
(1)
Illumina HumanWG-6
(1)
OXFORD_NANOPORE, MinION
(1)
Infinium_OmniExpress-24v1.0
(1)
NextSeq 500, Illumina HiSeq 2500, ILLUMINA
(1)
Illumina HiSeq 3000, ILLUMINA
(1)
NextSeq 550, ILLUMINA
(1)
Illumina HumanOmniExpress-12
(1)
COMPLETE_GENOMICS, Complete Genomics
(1)
Illumina MiSeq, ILLUMINA
(1)
Complete Genomics, COMPLETE_GENOMICS
(1)
ILLUMINA, NextSeq 500
(1)
Instrument Platform
Illumina NovaSeq 6000
(456)
NextSeq 500
(280)
Illumina HiSeq 2500
(230)
Illumina HiSeq 2000
(219)
Illumina HiSeq 4000
(195)
NextSeq 550
(63)
Illumina MiSeq
(54)
Illumina NovaSeq X
(48)
NextSeq 2000
(43)
Scanning hardware
(32)
Illumina Genome Analyzer II
(27)
Illumina Genome Analyzer IIx
(25)
BGISEQ-500
(22)
Illumina HiSeq 1500
(22)
GenePix 4000A [Axon Instruments]
(21)
Illumina HiSeq 3000
(19)
Axon- GenePix4000B
(17)
DNBSEQ-G400
(17)
GenePix 4000B [Axon Instruments]
(16)
Agilent 2100 Bioanalyzer
(15)
Axon GenePix 4000B scanning hardware
(15)
HiSeq X Ten
(15)
ScanArray [PerkinElmer]
(14)
Illumina HiSeq 1000
(13)
GenePix Personal 4100A [Axon Instruments]
(11)
418 [Affymetrix]
(11)
Other
(10)
Affymetrix Fluidics Station 400
(10)
NA
(10)
PromethION
(9)
Publication Date
2025
(3597)
2024
(3324)
2015
(3171)
2013
(3121)
2023
(2859)
2014
(2828)
2010
(2797)
2022
(2772)
2011
(2594)
2012
(2534)
2016
(2457)
2021
(2452)
2026
(2427)
2020
(2104)
2019
(1688)
2018
(1528)
2008
(1386)
2017
(1317)
2009
(1144)
2007
(747)
2005
(419)
2006
(295)
2004
(143)
2003
(46)
2002
(9)
UNIPROT ID/AC
O15111
(7)
Q00653
(7)
P62993
(7)
Q99558
(6)
P25963
(6)
Q07889
(6)
Q04206
(6)
P45983
(6)
Q01201
(5)
Q12933
(5)
Q9Y6K9
(5)
Q9EQ21
(5)
Q921I1
(5)
Q03135
(5)
P01375
(5)
O43318
(5)
P19838
(5)
Q02750
(5)
P01112
(5)
P05231
(5)
P01137
(5)
O14920
(5)
P31749
(5)
Q13489
(4)
Q13490
(4)
P99999
(4)
Q06124
(4)
P00338
(4)
P10415
(4)
Q07812
(4)
ENSEMBL ID
ENSG00000101017
(3)
ENSG00000100906
(3)
ENSG00000077150
(3)
ENSG00000112062
(2)
ENSG00000003402
(2)
ENSG00000171791
(2)
ENSG00000168036
(2)
ENSG00000149968
(2)
ENSG00000033327
(2)
ENSG00000100985
(2)
ENSG00000102908
(2)
ENSG00000118260
(2)
ENSG00000163739
(2)
ENSG00000120659
(2)
ENSG00000175104
(2)
ENSG00000118503
(2)
ENSG00000104432
(1)
ENSG00000168811
(1)
ENSG00000182866
(1)
ENSG00000125347
(1)
ENSG00000157368
(1)
ENSG00000169429
(1)
ENSG00000271503
(1)
ENSG00000106366
(1)
ENSG00000144566
(1)
ENSG00000044574
(1)
ENSG00000105664
(1)
ENSG00000137710
(1)
ENSG00000105974
(1)
ENSG00000006062
(1)
CHEBI ID
CHEBI:17126
(182)
CHEBI:16863
(98)
CHEBI:13086
(95)
CHEBI:12886
(95)
CHEBI:17411
(95)
CHEBI:49183
(91)
CHEBI:46970
(87)
CHEBI:17284
(87)
CHEBI:52320
(87)
CHEBI:29034
(75)
CHEBI:16480
(74)
CHEBI:29033
(74)
CHEBI:28599
(64)
CHEBI:27931
(64)
CHEBI:17029
(63)
CHEBI:27402
(63)
CHEBI:13711
(62)
CHEBI:27512
(62)
CHEBI:11614
(61)
CHEBI:52329
(61)
CHEBI:52327
(61)
CHEBI:52325
(61)
CHEBI:52328
(61)
CHEBI:52326
(60)
CHEBI:52324
(60)
CHEBI:52977
(60)
CHEBI:50577
(60)
CHEBI:18020
(60)
CHEBI:16475
(59)
CHEBI:31013
(59)
Metabolite Name
Creatine
(216)
Hypoxanthine
(203)
Creatinine
(199)
Taurine
(197)
Adenosine
(184)
Uridine
(179)
Uracil
(171)
Inosine
(171)
Adenine
(169)
Choline
(164)
L-Phenylalanine
(160)
Betaine
(156)
Glycine
(150)
Xanthine
(150)
Guanosine
(149)
L-Tyrosine
(149)
L-Tryptophan
(139)
Phenylalanine
(137)
Cytidine
(134)
Citric acid
(133)
Valine
(130)
L-Histidine
(129)
Ornithine
(128)
L-Glutamine
(128)
Guanine
(121)
L-Valine
(120)
Leucine
(118)
L-Threonine
(115)
Tyrosine
(114)
Isoleucine
(114)
First Public Date
2014
(3562)
2024
(3021)
2025
(2891)
2026
(2792)
2023
(2288)
2021
(1802)
2022
(1799)
2020
(1786)
2019
(1584)
2018
(1363)
2017
(1217)
2013
(1091)
2015
(948)
2016
(790)
2012
(41)
2011
(17)
2010
(13)
Modelling Approach
Ordinary differential equation model
(207)
Constraint-based model
(92)
Logical model
(9)
Petri net
(8)
Computational model
(5)
Boolean model
(4)
Population model
(4)
Delayed differential equation model
(3)
Finite element spatial model
(2)
Mathematical model
(2)
Steady-state model
(2)
Metabolic network
(2)
Other
(2)
Stochastic differential equation model
(2)
Pharmacodynamics model
(1)
Differential equation model
(1)
Partial differential equation model
(1)
Physiologically based pharmacokinetic model
(1)
Study status
Completed
(828)
Recruiting
(729)
Not provided
(262)
Not yet recruiting
(245)
Active, not recruiting
(189)
Terminated
(141)
Withdrawn
(53)
Enrolling by invitation
(22)
Ongoing
(11)
Suspended
(11)
No longer available
(2)
Other
(1)
Lab affiliation
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic
(38)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA
(23)
UCSD
(16)
University of Oxford
(16)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry
(15)
Department of Chemistry & Chemical Biology, Northeastern University
(13)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands
(12)
Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge, CB2 0XY, UK
(12)
Head of the Curie Institute Mass Spectrometry Platform
(12)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany
(11)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany
(11)
Ruhr-Universität Bochum, Medizinisches Proteom-Center
(11)
The University of Melbourne
(11)
Northeastern University
(10)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark
(10)
Department of oncology UNIL CHUV Ludwig Institute for Cancer Research Lausanne Office B25A/04/94 Rue du Bugnon 25a, CH-1005 Lausanne
(9)
Head of Proteomics
(9)
King's College London
(9)
School of Life Sciences, University of Warwick
(9)
Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea.
(8)
Laboratoire de Spectrométrie de Masse BioOrganique, Analytical Science department, IPHC, CNRS, Strasbourg University, UMR7178, Strasbourg, France
(8)
Proteomics facility, Central Science Laboratory, University of Tasmania
(8)
Ruhr University Bochum, Germany
(8)
UCSF
(8)
University of Victoria
(8)
Biochemistry and Molecular Biology, Michael Smith Laboratories, University of British Columbia, Canada
(7)
CRUK Scotland Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom
(7)
Department of Chemical & Systems Biology, Stanford University
(7)
Instituto de Investigaciones Sanitarias de Santiago de Compostela
(7)
Keck MS & Proteomics Resource Yale School of Medicine
(7)
Tags
pathogen
(1217)
pathogen:bacterium
(879)
pathogen:fungus
(136)
pathogen:virus
(103)
pathogen:protozoan
(83)
xref:PubMed:28385888
(36)
covid19
(29)
pathogen:helminth
(16)
xref:PubMed:26430163
(15)
xref:PubMed:33911273
(12)
wastewater
(12)
xref:PubMed:31719182
(11)
xref:PubMed:34951993
(9)
xref:PubMed:31784358
(9)
xref:PubMed:38355802
(9)
xref:PubMed:23698360
(9)
xref:PubMed:35469015
(8)
xref:PubMed:31024170
(8)
xref:PubMed:38242130
(8)
xref:PubMed:23362327
(8)
xref:PubMed:38448583
(8)
xref:PubMed:25437565
(7)
xref:PubMed:35440735
(7)
xref:PubMed:41000743
(7)
xref:PubMed:41333395
(7)
xref:PubMed:25009843
(7)
xref:PubMed:33664268
(7)
xref:PubMed:29036586
(7)
xref:PubMed:30415840
(7)
xref:PubMed:25762136
(7)
Keyword
Oxaliplatin
(121)
Bevacizumab
(119)
Irinotecan
(96)
Fluorouracil
(90)
Cetuximab
(88)
Leucovorin
(87)
Capecitabine
(82)
Pembrolizumab
(74)
Colonoscopy
(67)
Nivolumab
(52)
Immunotherapy
(50)
Levoleucovorin
(43)
Colorectal
(40)
Panitumumab
(35)
Metastatic
(35)
Screening
(33)
Chemotherapy
(32)
CRC
(29)
Paclitaxel
(23)
Durvalumab
(23)
Antibodies
(23)
Atezolizumab
(21)
Cyclophosphamide
(20)
Gemcitabine
(20)
Ipilimumab
(20)
Antibodies, Monoclonal
(20)
Colorectal cancer screening
(19)
Colorectal surgery
(19)
Tislelizumab
(18)
Trifluridine
(18)
IsPrivate
False
(420)
Model Flag
Non Kinetic
(137)
Non Miriam
(7)
Sbml Extended
(2)
Submitter Keywords
FROG
(8)
Immuno-oncology
(7)
Not Peer Reviewed
(7)
Machine Learning Model
(6)
Ersilia
(5)
COVID-19
(5)
FAIR-AIML
(4)
TransQST
(1)
Classification
bacteria
(879)
fungi
(136)
viruses
(103)
protozoa
(83)
helminths
(16)
Modification
N6
(23)
15.994915
(18)
4x(15)N labeled L-arginine
(18)
Not available
(17)
42.010565
(13)
2x(15)N labeled L-lysine
(12)
N6-dimethyl-L-lysine
(12)
-17.026549
(11)
57.021464
(11)
4-tetrahydrothiazine-3-carboxylic acid
(9)
45.029395
(8)
4x(2)H labeled dimethylated residue
(6)
58.005479
(5)
+3amu)
(4)
10.008269
(4)
3x(2)H labeled N6-acetyl-L-lysine
(3)
56.026215
(3)
59.036279
(2)
6.020129
(2)
-18.010565
(1)
0.984016
(1)
15.99491
(1)
26.01565
(1)
32.056407
(1)
4'-dihydroxyphenylalanine
(1)
47.036105
(1)
57.02146
(1)
6-dioxaoctanediamine derivatized cysteine
(1)
6x(2)H labeled dimethylated L-arginine
(1)
79.966331
(1)
Study type
Transcription profiling by array
(12855)
RNA-seq of coding RNA
(2488)
ChIP-seq
(974)
Comparative genomic hybridization by array
(727)
ChIP-chip by tiling array
(681)
Methylation profiling by array
(440)
RNA-seq of non coding RNA
(428)
Unknown experiment type
(346)
Other
(264)
RNA-seq of coding RNA from single cells
(252)
Genotyping by array
(215)
Methylation profiling by high throughput sequencing
(159)
Transcription profiling by tiling array
(147)
Transcription profiling by RT-PCR
(105)
ChIP-chip by array
(103)
DNA-seq
(97)
Proteomic profiling by array
(86)
MicroRNA profiling by array
(83)
RNA-seq of total RNA
(81)
Cell line - High-throughput sequencing
(49)
Transcription profiling by SAGE
(45)
ATAC-seq
(35)
Animal - High-throughput sequencing
(27)
RNAi profiling by array
(27)
CUT&RUN
(27)
High-throughput sequencing
(23)
MicroRNA profiling by high throughput sequencing
(22)
Cell line - One-color microarray
(16)
Human - One-color microarray
(16)
Bisulfite-seq
(14)
Release Date
2022
(67075)
2025
(59542)
2023
(59285)
2021
(56806)
2024
(50104)
2020
(44702)
2019
(34612)
2018
(29999)
2017
(24970)
2016
(21889)
2015
(20481)
2014
(17423)
2013
(13334)
2012
(11249)
2011
(9951)
2010
(9033)
2026
(8101)
2009
(6285)
2008
(5131)
2007
(2963)
2006
(2123)
2005
(1752)
2004
(1116)
2003
(902)
2002
(733)
2001
(666)
2000
(607)
1999
(475)
1998
(429)
1997
(103)
Location
United States
(727)
China
(373)
France
(232)
United Kingdom
(200)
Spain
(190)
Italy
(144)
Germany
(143)
Australia
(129)
Canada
(127)
Belgium
(107)
Netherlands
(100)
South Korea
(98)
Japan
(78)
Denmark
(62)
Taiwan
(55)
Poland
(48)
Austria
(39)
Hong Kong
(37)
Israel
(37)
Sweden
(33)
Singapore
(32)
Switzerland
(31)
Russia
(29)
Brazil
(28)
Iran
(27)
Turkey
(27)
Hungary
(26)
Czechia
(25)
Norway
(24)
New Zealand
(23)
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10
Paecilomyces variotii No. 5
Paecilomyces variotii No. 5 genome project
PRJDB1394
|
ENA
Cite
Nocardia sp. No.11
Nocardia sp. No.11 Genome sequencing
PRJNA1082629
|
ENA
Cite
no
Not available
PRJEB5191
|
ENA
Cite
Microbacterium sp. No. 7
Microbacterium sp. No. 7 Genome sequencing and assembly
PRJNA295341
|
ENA
Cite
Xylariales sp. No.14919
Genome Sequence of a Fungus Strain No.14919
PRJDB4667
|
ENA
Cite
Rhodococcus strain:No. 34
Rhodococcus sp. strain:No. 34
PRJDB37580
|
ENA
Cite
no submissions
no submissions
PRJEB63109
|
ENA
Cite
Caldichromatium japonicum strain:No.7
Caldichromatium japonicum strain No.7 Genome sequencing
PRJNA602199
|
ENA
Cite
Saccharomyces cerevisiae Kyokai no. 7
Saccharomyces cerevisiae strain kyokai no. 7 genome sequencing project
PRJDA45827
|
ENA
Cite
Saccharomyces cerevisiae Kyokai no. 7
Saccharomyces cerevisiae strain kyokai no. 7 genome sequencing project
PRJNA45827
|
ENA
Cite
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