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GenomicsPopulation epigenomics of Swedish Arabidopsis
Plants display remarkable developmental and phenotypic plasticity in order to adapt to their environment. It has long been postulated that epigenetics plays a key role in these processes, but with one or two exceptions, solid evidence for the role of epigenetic variation in these processes is lackin...
ORGANISM(S): Arabidopsis thaliana 
2015-03-28 | E-GEOD-65685 | biostudies-arrayexpress
GenomicsEffect of Chromomethylase-2 and Dicer-like-3 knockouts on DNA methylation
Whole genome bisulfite sequencing was performed on Chromomethylase-2 and Dicer-like-3 knockout mutants in order to confirm the results from genome wide association mapping and to identify the respective genomic regions that they target. Bisulfite sequencing of knockout mutants and WT controls
ORGANISM(S): Arabidopsis thaliana 
2015-03-28 | E-GEOD-66017 | biostudies-arrayexpress
GenomicsDNA methylation variation in Arabidopsis has a genetic basis and appears to be involved in local adaptation
Here we investigate DNA methylation variation in Swedish Arabidopsis thaliana accessions, demonstrating that methylation of transposable elements is temperature sensitive and associated with genetic polymorphism in both cis and trans, whereas gene body methylation is highly correlated with climate o...
ORGANISM(S): Arabidopsis thaliana 
2015-03-28 | E-GEOD-54292 | biostudies-arrayexpress
TranscriptomicsDNA methylation variation in Arabidopsis has a genetic basis and appears to be involved in local adaptation
We investigated DNA methylation variation in Swedish Arabidopsis thaliana accessions. We found that methylation of transposable elements is temperature sensitive and associated with genetic polymorphism in both cis and trans, whereas gene body methylation is associated with genetic polymorphism in t...
ORGANISM(S): Arabidopsis thaliana 
2015-01-01 | E-GEOD-54680 | biostudies-arrayexpress
UnknownThe pattern of polymorphism in Arabidopsis thaliana.
Not available
S-EPMC1135296 | biostudies-literature
GenomicsChromatin immunoprecipitation analysis of CENH3 in the Arabidopsis thaliana accessions Col-0, Ler-0, Cvi-0 and Tanz-1
Chromatin immunoprecipitation analysis of CENH3 in the Arabidopsis thaliana accessions Col-0, Ler-0, Cvi-0 and Tanz-1 was performed in order to align reads to PacBio HiFi genome assemblies which contain complete centromere repeat arrays.
ORGANISM(S): Arabidopsis thaliana 
2022-08-01 | E-MTAB-11974 | biostudies-arrayexpress
GenomicsOxford nanopore sequencing data from the Arabidopsis thaliana accessions Ler-0, Cvi-0 and Tanz-1
Oxford nanopore sequencing data from the Arabidopsis thaliana accessions Ler-0, Cvi-0 and Tanz-1
ORGANISM(S): Arabidopsis thaliana 
2022-08-06 | E-MTAB-12009 | biostudies-arrayexpress
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