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Unknown (17349)
Proteomics (2159)
Genomics (1774)
Transcriptomics (1461)
Metabolomics (62)
Other (14)
Models (8)
Clinical (6)
Methylation profiling (6)
Genomic (2)
Multiomics (1)

Organisms

Homo sapiens (719)
Mus musculus (642)
Caenorhabditis elegans (189)
Drosophila melanogaster (105)
Rattus norvegicus (81)
Saccharomyces cerevisiae (78)
Arabidopsis thaliana (29)
Schizosaccharomyces pombe (24)
Danio rerio (19)
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Zea mays (7)
Tetrahymena thermophila (6)
synthetic construct (6)
Ovis aries (6)
Corynebacterium glutamicum (5)
Salmonella enterica subsp. enterica serovar Typhimurium (5)
Plasmodium falciparum (5)
Macaca mulatta (5)
Influenza A virus (4)
Xenopus laevis (4)
Influenza A virus (A/Puerto Rico/8/1934(H1N1)) (3)
Saccharomyces cerevisiae SK1 (3)
Gossypium hirsutum (3)
Saccharomyces cerevisiae S288C (3)
Metazoa (1)
Rattus (1)
Mammalia (1)

Organisms

Mus musculus (329)
Homo sapiens (214)
human nasopharyngeal metagenome (184)
Rattus norvegicus (54)
soil metagenome (15)
Saccharomyces cerevisiae (14)
Fusarium verticillioides (12)
Nostoc punctiforme PCC 73102 (9)
Arabidopsis thaliana (8)
Canis lupus familiaris (7)
Fusarium graminearum (6)
algae metagenome (6)
Bos taurus (6)
Caenorhabditis elegans (6)
Oryza sativa (5)
Sus scrofa (5)
Influenza A virus (4)
Gallus gallus (4)
Danio rerio (4)
Neurospora crassa OR74A (3)
activated sludge metagenome (3)
Saccharum spontaneum (3)
Colletotrichum graminicola (2)
Oncorhynchus mykiss (2)
leaf metagenome (2)
root metagenome (2)
Mus (2)
Listeria innocua (2)
Macaca mulatta (2)
Macaca fascicularis (2)

Repository

pride (2027)
biostudies-arrayexpress (1607)
ENA (1225)
geo (392)
MassIVE (44)
MetaboLights (40)
EGA (36)
iProX (35)
jPOST (27)
MetabolomicsWorkbench (14)
NODE (11)
BioModels (8)
GNPS (8)
PanoramaPublic (6)
dbGaP (2)
GPMDB (2)
ExpressionAtlas (1)
PeptideAtlas (1)

Tissue

Cell culture (615)
Epithelial cell (152)
Permanent cell line cell (101)
Brain (89)
Leaf (68)
Liver (63)
Embryonic stem cell (53)
Kidney (48)
Blood (44)
Whole body (44)
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HeLa cell (36)
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B cell (30)
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Cell line (4)
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Cells (1)
Fibroblast cells (1)
Plant (1)
Eye tissue (1)
Cultured cells (1)
Feces (1)
Liver (1)
Prefrontal Cortex (1)

Disease

Breast cancer (45)
Normal (16)
Influenza (15)
Colorectal cancer (6)
Hepatocellular carcinoma (2)
Colorectal Neoplasms (2)
Not Available (2)
High risk B-precurser acute lymphoblastic leukemia (1)
Thompson grade 3 (1)
Follicular lymphoma (1)
Malignant fibrous histiocytoma (1)
Osteosarcoma (1)
Critical chronic obstructive pulmonary disease (1)
Non-diabetic (1)
Cancer (1)
Leiomyosarcoma (1)
Gastric cancer (1)
Carcinoma (1)
Healthy donor tissue (1)
Colorectal adenoma (1)
Breast Neoplasms (1)
Rectal Neoplasms (1)
Neoplasms (1)
Dermatitis (1)
Preeclampsia (1)
Parasitic infection (1)
Obesity (1)
Bacterial infection (1)
Eye disease (1)
Malaria (1)

Technology Type

Mass Spectrometry (2041)
Shotgun proteomics (841)
Affinity purification coupled with mass spectrometry proteomics (620)
Bottom-up proteomics (417)
Data-dependent acquisition (257)
Gel-based experiment (146)
Data-independent acquisition (110)
SWATH MS (52)
Top-down proteomics (43)
Chemical cross-linking coupled with mass spectrometry proteomics (31)
Mass spectrometry (29)
Affinity proteomics (23)
SRM/MRM (18)
ESI (13)
Mass spectrometry assay (10)
Immunopeptidomics (10)
All-ion fragmentation (9)
DiaPASEF (5)
Mass spectrometry imaging (4)
NMR spectroscopy (3)
EI (2)
Glycoproteomics (2)
Proteogenomics (2)
Illumina Infinium HumanMethylation450 BeadChips (1)
Illumina HumanExome-12v1_A-GenCall, zCall, GenoSNP, - Illuminus (1)
Illumina HiSeq 2000 (1)
Unspecified (1)
HDMSE (1)
MSE (1)
RNA mass spectrometry (1)

Instrument Platform

NextSeq 500 (53)
Illumina HiSeq 2000 (50)
Illumina NovaSeq 6000 (46)
Illumina HiSeq 2500 (35)
Illumina HiSeq 4000 (24)
Illumina MiSeq (15)
Illumina Genome Analyzer II (13)
NextSeq 2000 (13)
NextSeq 550 (12)
Axon GenePix 4000B scanning hardware (8)
Illumina Genome Analyzer IIx (6)
Illumina NovaSeq X (6)
Element AVITI (4)
Agilent G2565BA (3)
Illumina HiSeq 1500 (3)
IEO HPC (2)
PromethION (2)
Axon GenePix4000B (2)
Axon- GenePix4000B (2)
HiSeq X Ten (2)
Illumina HiSeq 3000 (2)
Using NEBNext Ultra II DNA Library (1)
KAPA RNA HyperPrep Kit (1)
Omni ATAC kit (1)
Computer (1)
BD FACS Aria Cell Sorter (1)
Illumina Omni1-Quad Beadchip (1)
G2565CA DNA microarray scanner (Agilent Technologies) (1)
PacBio RS II (1)
454 GS 20 (1)

Publication Date

2025 (425)
2026 (376)
2023 (365)
2024 (322)
2022 (315)
2021 (273)
2013 (262)
2015 (225)
2012 (202)
2014 (193)
2020 (188)
2019 (183)
2016 (174)
2010 (174)
2018 (132)
2011 (127)
2017 (77)
2009 (53)
2008 (52)
2007 (25)
2006 (25)
2005 (18)
2004 (2)
2003 (1)

UNIPROT ID/AC

P63231 (1)
P06820 (1)
P03437 (1)
P03508 (1)
P15659 (1)
P03427 (1)
P16511 (1)
P05777 (1)
P03466 (1)
P01308 (1)
P00533 (1)
P01133 (1)
A0A4V6 (1)
A0JLQ7 (1)
A0JNY3 (1)
A0JNY7 (1)
A0MNP4 (1)
A1A553 (1)
A1ILG8 (1)
A1L0U3 (1)
A1L0U6 (1)
A1L317 (1)
A1L347 (1)
A1L361 (1)
A1L366 (1)
A1L3B6 (1)
A1L3B8 (1)
A2A432 (1)
A2A4P0 (1)
A2A4Z0 (1)

ENSEMBL ID

ENSMUSG00000021039 (1)
ENSMUSG00000027651 (1)
ENSMUSP00000141097 (1)

CHEBI ID

CHEBI:15741 (10)
CHEBI:15428 (8)
CHEBI:30769 (8)
CHEBI:6650 (7)
CHEBI:18237 (7)
CHEBI:16865 (7)
CHEBI:16449 (7)
CHEBI:17368 (7)
CHEBI:17822 (6)
CHEBI:26271 (6)
CHEBI:16811 (6)
CHEBI:24898 (6)
CHEBI:25017 (6)
CHEBI:28044 (6)
CHEBI:27266 (6)
CHEBI:16359 (6)
CHEBI:16411 (6)
CHEBI:16704 (6)
CHEBI:16196 (6)
CHEBI:32816 (6)
CHEBI:30915 (6)
CHEBI:27897 (6)
CHEBI:17596 (6)
CHEBI:27432 (6)
CHEBI:22660 (5)
CHEBI:16708 (5)
CHEBI:16000 (5)
CHEBI:16135 (5)
CHEBI:30887 (5)
CHEBI:26667 (1)

Metabolite Name

Leucine (7)
Malic acid (7)
Proline (7)
Isoleucine (7)
Sucrose (7)
Creatinine (7)
Tryptophan (7)
Glycine (6)
Valine (6)
Methionine (6)
Citric acid (6)
Serine (6)
Adenosine (6)
Alanine (6)
Glutaric acid (6)
Glutamine (6)
Glycerophosphocholine (6)
Inosine (6)
Hypoxanthine (6)
Chenodeoxycholic acid (5)
Ornithine (5)
Daidzein (5)
Succinic acid (5)
Glyceric acid (5)
Tyrosine (5)
Threonine (5)
Phenylalanine (5)
Adenine (5)
Glutamic acid (5)
Aspartic acid (5)

First Public Date

2022 (264)
2025 (149)
2026 (120)
2024 (117)
2023 (109)
2021 (103)
2014 (100)
2020 (67)
2019 (49)
2017 (42)
2018 (29)
2016 (28)
2015 (24)
2013 (24)

Modelling Approach

Ordinary differential equation model (8)

Study status

Not provided (2)
Completed (2)
Terminated (1)
Not yet recruiting (1)

Lab affiliation

University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (35)
EDyP (18)
Head of the Curie Institute Mass Spectrometry Platform (14)
Department Biochemistry of Plant Interactions, Leibniz Institute of Plant Biochemistry, 06120 Halle (Saale), Germany (8)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (8)
Institute of Molecular Biology (IMB), Mainz, Germany (8)
Bioplatforms Australia (7)
Center for Structural Biology, Center for Cancer Research, National Cancer Institute (NCI), National Institutes of Health, Frederick, MD 21702-1201, USA (7)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (6)
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, 50463, Republic of Korea (6)
Head of System Biology Lab. at Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency (6)
Leibniz Institute of Plant Biochemistry, Department Biochemistry of Plant Interactions, Weinberg 3, 06120 Halle (Saale), Germany (6)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (6)
Institute for Cardiovascular Regeneration, Centre for Molecular Medicine, Goethe University Frankfurt am Main, Germany (5)
Institute of Molecular Systems Biology, ETH Zurich, 8093 Zurich, Switzerland Faculty of Science, University of Zurich, Zurich, Switzerland (5)
Molecular Biosciences and the Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, TX USA (5)
University of Alabama at Birmingham, Department of Pathology, Division MCP, O'Neal Comprehensive Cancer Center (5)
VIB-UGent Center for Medical Biotechnology (5)
Whitehead Institute and MIT (5)
Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver V5Z 1L3, Canada. (4)
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, 1090 Vienna, Austria (4)
Department Biochemistry of Plant Interactions, Leibniz Institute of Plant Biochemistry, Halle (Saale), Germany (4)
Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, 6525 GA Nijmegen, The Netherlands (4)
German Cancer Consortium (DKTK), partner site Freiburg German Cancer Research Center (DKFZ) Foundation under Public Law c/o Department of Urology Zentrale Klinische Forschung (ZKF) Medical Center-University of Freiburg Breisacher Str. 66, 79106 Freiburg, Germany (4)
Harvard Medical School (4)
Huazhong Agricultural University (4)
Infection and Immunity Program and Department of Biochemistry and Molecular Biology, Monash Biomedicine Discovery Institute, Monash University, Clayton, Victoria 3800, Australia (4)
Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences (4)
Research Scientist, Ganga Orthopedic Research and Education Foundation, 187, Mettupalayam Road, Kavundampalayam, Coimbatore- 641030, Tamil Nadu, India (4)
Seer, Inc. (4)

Tags

pathogen (36)
covid19 (20)
pathogen:fungus (19)
pathogen:virus (9)
pathogen:bacterium (7)
xref:PubMed:41261861 (5)
xref:PubMed:36333700 (4)
xref:PubMed:22170606 (4)
xref:PubMed:30699343 (4)
xref:PubMed:38297831 (4)
xref:PubMed:38969872 (4)
xref:PubMed:25772140 (4)
xref:PubMed:34798898 (3)
xref:PubMed:22579914 (3)
xref:PubMed:42162419 (3)
xref:PubMed:38889716 (3)
xref:PubMed:39297882 (3)
xref:PubMed:38409236 (2)
xref:PubMed:32951297 (2)
xref:PubMed:40768336 (2)
xref:PubMed:35314823 (2)
xref:PubMed:37255604 (2)
xref:PubMed:40066448 (2)
xref:PubMed:20804614 (2)
xref:PubMed:36973489 (2)
xref:PubMed:39753825 (2)
xref:PubMed:35194044 (2)
xref:PubMed:32268094 (2)
xref:PubMed:40397664 (2)
xref:PubMed:32101752 (2)

Keyword

Locally advanced rectal cancer (resectable) (1)
Locally advanced rectal cancer (non-resectable) (1)
Nanopharmaceutical (1)
CLRX101 (1)
Locally advanced rectal cancer (1)
Neuropathy (1)
Prevalence (1)
Histology (1)
Methylprednisolone Acetate (1)
Methylprednisolone Hemisuccinate (1)
Prednisolone (1)
Prednisolone acetate (1)
Prednisolone hemisuccinate (1)
Prednisolone phosphate (1)
Methylprednisolone (1)
Chemoradiotherapy (1)
Exercise (1)
Camptothecin (1)
Capecitabine (1)

IsPrivate

False (8)

Classification

fungi (19)
viruses (9)
bacteria (7)
protozoa (1)

Modification

4x(15)N labeled L-arginine (4)
N6 (4)
2x(15)N labeled L-lysine (3)
4-tetrahydrothiazine-3-carboxylic acid (2)
N6-dimethyl-L-lysine (2)
Not available (2)
4 (1)

Study type

ChIP-seq (449)
Transcription profiling by array (354)
ChIP-chip by tiling array (202)
RNA-seq of coding RNA (173)
ChIP-chip by array (98)
Other (72)
RNA-seq of non coding RNA (34)
Comparative genomic hybridization by array (26)
Methylation profiling by high throughput sequencing (19)
ATAC-seq (17)
RIP-seq (13)
Methylation profiling by array (13)
RNA-seq of coding RNA from single cells (13)
CLIP-seq (12)
Unknown experiment type (11)
Cell line - High-throughput sequencing (9)
DNA-seq (9)
Proteomic profiling by array (9)
Animal - High-throughput sequencing (8)
Genotyping by array (8)
Transcription profiling by tiling array (7)
Ribo-seq (7)
Hi-C (6)
High-throughput sequencing (5)
MNase-seq (4)
RNA-seq of total RNA (4)
Single nucleus RNA sequencing (3)
GRO-seq (2)
MicroRNA profiling by high throughput sequencing (2)
4C (2)

Release Date

2022 (1997)
2021 (1895)
2023 (1789)
2025 (1626)
2024 (1544)
2020 (1440)
2019 (1219)
2018 (1112)
2016 (954)
2017 (879)
2015 (843)
2014 (716)
2013 (610)
2012 (469)
2011 (399)
2010 (384)
2026 (288)
2009 (203)
2008 (197)
2007 (116)
2006 (83)
2005 (61)
2004 (29)
2002 (26)
2003 (21)
2001 (18)
2000 (15)
1999 (13)
1998 (7)
1997 (2)

Location

United States (2)
Japan (1)
Belgium (1)
France (1)

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Bacillus safensis NP-4

Bacillus safensis NP-4 Genome Sequencing

PRJNA201672 | ENA

Porphyromonadaceae sp. NP-X

Porphyromonadaceae sp. NP-X Genome sequencing and assembly

PRJNA1009970 | ENA

NP-18 vs. NP-18AR transcriptional profile upon treatment with TK/GCV

Pancreatic cancer-derived cells NP-18 underwent four rounds of treatment with increasing doses of an adenoviral vector encoding TK enzyme and GCV. Surviving cells were termed NP-18AR and displayed decreased sensitivity to treatment. This experiment analyses the transcriptomic effect of TK/GCV treatm...

ORGANISM(S): Homo sapiens

2010-07-16 | E-GEOD-17137 | biostudies-arrayexpress

Bacillus anthracis str. V770-NP-1R

Bacillus anthracis str. V770-NP-1R Genome sequencing

PRJNA235226 | ENA

Bacillus safensis strain:NP-4

Bacillus safensis strain:NP-4 Genome sequencing and assembly

PRJNA624018 | ENA

Streptomyces sp. NP-1717

Streptomyces sp. NP-1717 Genome sequencing and assembly

PRJNA603449 | ENA

Conus sp. NP-2014

Conus sp. NP-2014 Transcriptome or Gene expression

PRJNA246256 | ENA

Myroides sp. NP-2

Myroides sp. NP-2 Genome sequencing and assembly

PRJNA650024 | ENA

Rhodovulum sulfidophilum strain:NP

Rhodovulum sulfidophilum NP genome sequencing

PRJNA834339 | ENA

NP Metagenome

PRJNA724020 | ENA

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OmicsDI Databases

PRIDE
PeptideAtlas
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JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
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FAIRDOMHub

ArrayExpress
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ExpressionAtlas
GEO
NODE

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