Np1 - OmicsDI

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Genomics (164)
Unknown (133)
Transcriptomics (41)
Models (7)
Proteomics (7)
Other (2)
Metabolomics (1)

Organisms

Homo sapiens (26)
Mus musculus (11)
Mycobacterium tuberculosis (5)
Canis lupus familiaris (2)
Staphylococcus epidermidis ATCC 12228 (1)
Xenopus laevis (1)
Salmo salar (1)
Bos taurus (1)
Anguilla anguilla (1)
Borreliella burgdorferi B31 (1)
Cunninghamia lanceolata (1)
Drosophila melanogaster (1)
Rattus rattus (1)

Organisms

seawater metagenome (134)
Drosophila melanogaster (3)
Homo sapiens (3)
Canis lupus familiaris (2)
Mus musculus (2)
Nesterenkonia massiliensis (1)
Bacillus anthracis str. V770-NP1-R (1)
Bradyrhizobium sp. NP1 (1)
Candidatus Pelagibacter giovannonii (1)
Jiella pelagia (1)
Candidatus Thioglobus sp. NP1 (1)
Bacteroides sp. NP1 (1)
Borreliella burgdorferi B31 (1)
Anguilla anguilla (1)
Phytophthora ramorum (1)
Borreliella burgdorferi (1)
Cunninghamia lanceolata (1)
Salmo salar (1)
Monascus purpureus (1)
Streptococcus pneumoniae (1)
Rattus norvegicus (1)

Repository

ENA (163)
biostudies-arrayexpress (36)
geo (8)
BioModels (7)
iProX (3)
pride (3)
MassIVE (1)
MetaboLights (1)

Tissue

Cell culture (1)
Epithelial cell (1)
HeLa cell (1)
Permanent cell line cell (1)

Technology Type

Mass Spectrometry (3)
Affinity purification coupled with mass spectrometry proteomics (2)
Shotgun proteomics (2)
Mass spectrometry assay (1)
Data-dependent acquisition (1)

Instrument Platform

Illumina NovaSeq 6000 (2)
Nanodrop N1000 spectrophotometer (1)
Orbitrap Eclipse (1)
Liquid Chromatography MS - alternating - reverse-phase (1)

Publication Date

2025 (7)
2012 (7)
2015 (5)
2013 (5)
2026 (4)
2024 (4)
2016 (4)
2008 (4)
2023 (3)
2014 (3)
2011 (3)
2022 (2)
2019 (2)
2010 (1)
2009 (1)
2007 (1)

UNIPROT ID/AC

Q01813 (2)
P17858 (2)
P21439 (2)
P05062 (2)
P09972 (2)
P04075 (2)
P07738 (2)
P00338 (2)
P07195 (2)
P43490 (2)
P14618 (2)
P04406 (2)
P30613 (2)
P06744 (2)
P06733 (2)
P09104 (2)
P13929 (2)
P08237 (2)
O14556 (2)
P00558 (2)
P07205 (2)
P18669 (2)
P60174 (2)
Q8CQ79 (1)
A0A0H2VIH0 (1)
Q8CPG7 (1)
Q8CPZ7 (1)
Q8CS47 (1)
Q8CSX6 (1)
Q8CMM3 (1)

CHEBI ID

CHEBI:7560 (7)
CHEBI:7916 (7)
CHEBI:57692 (7)
CHEBI:4208 (7)
CHEBI:1989 (7)
CHEBI:7125 (7)
CHEBI:371 (7)
CHEBI:48153 (7)
CHEBI:9532 (7)
CHEBI:422 (7)
CHEBI:4167 (7)
CHEBI:25531 (6)
CHEBI:58527 (6)
CHEBI:61161 (6)
CHEBI:37574 (6)
CHEBI:597326 (6)
CHEBI:57371 (6)
CHEBI:67119 (6)
CHEBI:37565 (6)
CHEBI:16530 (6)
CHEBI:17230 (6)
CHEBI:20506 (6)
CHEBI:27748 (6)
CHEBI:44897 (6)
CHEBI:16234 (6)
CHEBI:15940 (6)
CHEBI:16610 (6)
CHEBI:15763 (6)
CHEBI:17154 (6)
CHEBI:16171 (6)

Metabolite Name

1-O-((3.beta.,5.Xi.,9.Xi.,18.Xi.,19.Xi.,20.Xi.)-3-((6-Deoxyhexopyranosyl)oxy)-27-hydroxy-27,28-dioxours-12-en-28-yl)-6-O-hexopyranosylhexopyranose (1)
MCULE-7407861812 (1)
NCGC00381308-01 (1)
Ncgc00169736-02!(3r,5r)-3,4,5-tris[[(e)-3-(3,4-dihydroxyphenyl)prop-2-enoyl]oxy]-1-hydroxycyclohexane-1-carboxylic acid (1)
2-[2-[(E)-(Isonicotinoylhydrazono)methyl]phenoxy]acetic acid (1)
5-(4-Hydroxyphenyl)-1-[2-(4-hydroxyphenyl)ethyl]pentyl 2-O-D-apio-.beta.-D-furanosyl-.beta.-D-glucopyranoside (1)
Kaempferol 3-glucoside 7-rhamnoside (1)
CHEMBL2326941 (1)
Indigoticoside A (1)
12-Deoxyphorbol 13-laurate (1)
.beta.-Linoleoyl-.alpha.-glycerophosphorylcholine (1)
CHEBI:139416 (1)
Liguiritigenin-7-O-beta-D-apiosyl-4'-O-beta-D-glucoside (1)
17:0 Lyso PC (1)
Dilauroylphosphatidic acid (1)
SCHEMBL19999136 (1)
MEGxp0_001059 (1)
4-(4-(4-Hydroxy-3-methoxyphenyl)tetrahydro-1H,3H-furo[3,4-c]furan-1-yl)-2-methoxyphenyl hexopyranoside (1)
Maslic acid (1)
5-Hydroxy-1,7,7-trimethylbicyclo[2.2.1]heptan-2-yl 6-O-(3,4-dihydroxy-4-(hydroxymethyl)tetrahydrofuran-2-yl)hexopyranoside (1)
2-(4-Methylcyclohex-3-en-1-yl)propan-2-yl 6-O-(6-deoxy-.alpha.-L-mannopyranosyl)-.beta.-D-glucopyranoside (1)
23-Hydroxytormentic acid (1)
6-O-.beta.-D-Glucopyranosyl-1-O-((3.beta.,5.xi.,9.xi.)-3,19,24-trihydroxy-24,28-dioxours-12-en-28-yl)-.beta.-D-glucopyranose (1)
3,19-Dihydroxyurs-12-ene-23,28-dioic acid (1)
1-O-(2,3,19,23-Tetrahydroxy-23,28-dioxours-12-en-28-yl)hexopyranose (1)
3,5-Di-O-caffeoyl-4-O-(3-hydroxy-3-methyl)glutaroylquinic acid (1)
2,7-Dihydroxy-8-(5-hydroxy-7-isopropyl-3-keto-4-methyloct-7-enyl)-4a,7-dimethyl-1,2,3,4,5,6,8,9,10,10a-decahydrophenanthrene-1-carboxylic acid (1)
Jasminoside R (1)
MMV689029 (1)
(3.beta.,5.xi.,9.xi.)-3,6,19-Trihydroxyurs-12-en-28-oic acid (1)

IsPrivate

False (7)

Submitter Keywords

Not Peer Reviewed (2)
FROG (1)

First Public Date

2025 (139)
2026 (5)
2022 (4)
2023 (3)
2014 (3)
2019 (2)
2018 (2)
2013 (2)
2021 (1)
2020 (1)
2012 (1)

Classification

bacteria (5)

Modelling Approach

Constraint-based model (6)
Metabolic network (1)

Study type

Transcription profiling by array (26)
RNA-seq of coding RNA (4)
Comparative genomic hybridization by array (2)
RNA-seq of non coding RNA (2)
ChIP-seq (1)
MicroRNA profiling by array (1)

Release Date

2025 (15)
2016 (14)
2024 (12)
2021 (12)
2013 (11)
2022 (10)
2015 (10)
2012 (10)
2019 (10)
2014 (9)
2023 (8)
2018 (8)
2008 (7)
2020 (7)
2009 (6)
2007 (6)
2011 (5)
2017 (5)
2006 (2)
2010 (1)
2004 (1)

Lab affiliation

Department of Chemistry, Faculty of Science, Chulalongkorn University (1)
Institute of Molecular Biology, Ackermannweg 4, 55128 Mainz, Germany (1)
Proteomics Core Facility, Biozentrum, University of Basel, Switzerland (1)

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Bradyrhizobium sp. NP1

Bradyrhizobium sp. NP1 Genome sequencing

PRJNA975924 | ENA

Monascus purpureus strain:NP1

Monascus purpureus strain:NP1 Genome sequencing

PRJNA1165499 | ENA

Jiella pelagia strain:HL-NP1

Jiella pelagia strain:HL-NP1 Genome sequencing

PRJNA891489 | ENA

Candidatus Thioglobus sp. NP1

Candidatus Thioglobus sp. NP1 Genome sequencing

PRJNA414010 | ENA

Next Generation Sequencing Facilitates Quantitative Analysis of NP1 and NP1/CRTCHA Gut Transcriptomes

PRJNA767845 | ENA

Next Generation Sequencing Facilitates Quantitative Analysis of NP1 and NP1/CRTCHA Gut Transcriptomes

Differential expression analysis used the DESeq2 Bioconductor package, a model based on the negative binomial distribution. the estimates of dispersion and logarithmic fold changes incorporate data-driven prior distributions, Padj of genes were setted <0.05 to detect differential expressed ones.Our ...

ORGANISM(S): Drosophila melanogaster

2022-08-10 | GSE185159 | GEO

Streptococcus pneumoniae strain:NP1

Streptococcus pneumoniae strain:NP1 Genome sequencing

PRJNA904522 | ENA

Candidatus Pelagibacter giovannonii strain:NP1

Candidatus Pelagibacter giovannonii strain NP1 Genome Sequencing

PRJNA531001 | ENA

Bacillus anthracis str. V770-NP1-R

Bacillus anthracis str. V770-NP1-R Genome sequencing and assembly

PRJNA231233 | ENA

Bacteroides sp. NP1