Nucleoporin - OmicsDI

Show results for

Unknown (503)
Genomics (167)
Transcriptomics (140)
Proteomics (59)
Other (9)
Metabolomics (4)
Multiomics (1)

Organisms

Mus musculus (90)
Homo sapiens (65)
Aerococcus urinae NBRC 15544 = CCUG 36881 (38)
Alteromonadales (38)
Bacteria (38)
Canis lupus familiaris (38)
Carya cathayensis (38)
Ectopseudomonas oleovorans CECT 5344 (38)
Ensifer adhaerens (38)
Enterococcus faecalis (38)
Globicatella sanguinis (38)
Halictus scabiosae (38)
Histomonas meleagridis (38)
Human immunodeficiency virus 1 (38)
Listeria monocytogenes (38)
Methylohalobius crimeensis 10Ki (38)
Mus musculus (38)
Olavius algarvensis sulfate-reducing endosymbiont (38)
Ophrys garganica (38)
Ophrys sphegodes (38)
Drosophila melanogaster (22)
Saccharomyces cerevisiae (15)
Arabidopsis thaliana (9)
Rattus norvegicus (2)
Viruses (1)
Solanum lycopersicum (1)
Plasmodium falciparum (1)
Danio rerio (1)
Schizosaccharomyces pombe (1)
Caenorhabditis elegans (1)

Organisms

Mus musculus (44)
Homo sapiens (27)
Drosophila melanogaster (13)
Saccharomyces cerevisiae (7)
Arabidopsis thaliana (6)
Caenorhabditis elegans (2)
Rattus norvegicus (1)

Repository

ENA (115)
geo (108)
biostudies-arrayexpress (89)
pride (38)
MassIVE (16)
MetaboLights (4)
EGA (3)
iProX (3)
jPOST (2)
ExpressionAtlas (1)

Tissue

Cell culture (10)
Permanent cell line cell (6)
Bone marrow (2)
Epithelial cell (2)
Callus (1)
Cell line cell (1)
Cell line cell culturing (1)
Early embryonic cell (1)
Embryo (1)
Embryonic stem cell (1)
Epithelial cell of cervix (1)
Fibroblast (1)
Liver (1)
Malignant cell (1)
Plant cell (1)
Primary cell (1)
Seedling (1)
T cell (1)
THP-1 cell (1)
Thymus (1)
Whole body (1)

Disease

Trypanosomiasis (6)
Acute myeloid leukemia (1)
Acute leukemia (1)
Colon cancer (1)
Primary autosomal recessive microcephaly (1)
Seckel syndrome (1)

Technology Type

Mass Spectrometry (38)
Affinity purification coupled with mass spectrometry proteomics (11)
Shotgun proteomics (11)
Bottom-up proteomics (9)
Data-dependent acquisition (7)
Mass spectrometry (3)
Data-independent acquisition (3)
Gel-based experiment (3)
SWATH MS (2)
ILLUMINA, Illumina HiSeq 2000 (1)
Mass spectrometry assay (1)
Affinity proteomics (1)
All-ion fragmentation (1)

Instrument Platform

Orbitrap Fusion Lumos (4)
Illumina NovaSeq 6000 (3)
LTQ (2)
LTQ Orbitrap Velos (2)
Orbitrap Exploris 480 (2)
Q Exactive HF (2)
TripleTOF 6600 (2)
Illumina HiSeq 2000 (1)
Illumina HiSeq 4000 (1)
NextSeq 500 (1)
Orbitrap Eclipse (1)
Q Exactive Plus (1)
Synapt MS (1)
TimsTOF HT (1)
TripleTOF 5600 (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2025 (45)
2026 (19)
2020 (18)
2024 (17)
2016 (16)
2023 (16)
2021 (15)
2014 (15)
2018 (13)
2013 (13)
2022 (12)
2008 (10)
2012 (9)
2010 (9)
2015 (8)
2019 (7)
2011 (6)
2007 (5)
2017 (3)
2006 (2)
2009 (1)
2005 (1)

CHEBI ID

CHEBI:232967 (1)
CHEBI:209918 (1)
CHEBI:141030 (1)

Metabolite Name

Inosine 5'-triphosphate (2)
.beta.-muricholic acid (2)
Carfentrazone-ethyl (2)
Enniatin a (2)
Dacthal (2)
Glucosamine-6-phosphate (2)
Alexidine (2)
Prostaglandin g2 (2)
Pro-thr (2)
N-(dodecanoyl)sphing-4-enine (2)
Chloramphenicol succinate (2)
Bacoside a (2)
Albiflorin (2)
2-hydroxyatrazine (2)
Trans-crocetin (2)
Tomatidin (2)
Tetradifon (2)
S-methyl-l-cysteine (2)
Perchloroterephthalic acid (2)
Penitrem a (2)
N-octanoylsphingosine (2)
Myristoyl-l-carnitine (2)
Lpc 18:1 (2)
Lasalocid (2)
Herbimycin a (2)
Epothilone b (2)
Endrin aldehyde (2)
Cucurbitacin b (2)
7-keto-8-aminopelargonic acid (2)
4-hydroxycyclophosphamide (2)

First Public Date

2025 (32)
2024 (13)
2020 (12)
2023 (11)
2018 (10)
2021 (7)
2014 (7)
2026 (6)
2022 (6)
2019 (4)
2013 (3)
2017 (2)
2016 (1)
2015 (1)

Modification

N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (48)
ChIP-seq (12)
RNA-seq of coding RNA (11)
Comparative genomic hybridization by array (5)
Other (3)
ChIP-chip by tiling array (2)
RNA-seq of total RNA (2)
Unknown experiment type (1)
RIP-chip by array (1)
Transcription profiling by tiling array (1)
ChIP-chip by array (1)
Methylation profiling by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2025 (42)
2022 (41)
2020 (36)
2024 (36)
2023 (35)
2016 (33)
2018 (32)
2015 (31)
2014 (31)
2013 (30)
2021 (29)
2019 (27)
2012 (25)
2010 (23)
2017 (21)
2008 (21)
2011 (20)
2009 (11)
2026 (10)
2007 (9)
2006 (8)
2005 (8)
2003 (7)
2000 (6)
2004 (4)
2002 (4)
1999 (4)
1998 (3)
1997 (3)
2001 (2)

Lab affiliation

School of Basic Medical Sciences, Chongqing Medical University (2)
1Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC 27599, USA. 2Department of Biochemistry and Biophysics, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC 27599, USA. 3Biological and Biomedical Sciences Program, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA. (1)
1VIB Center for Medical Biotechnology, VIB, Technologiepark-Zwijnaarde 75, 9052 Ghent, Belgium. 2Department of Biomolecular Medicine, Ghent University, Technologiepark-Zwijnaarde 75, 9052 Ghent, Belgium. (1)
Bioanalytical Mass Spectrometry Group, Max Planck Institute for Multidisciplinary Sciences, Germany (1)
Carnegie Mass Spectrometry Facility (1)
Case Western Reserve University, Department of Genetics and Genome Sciences, School of Medicine (1)
Center for Global Infectious Disease Research, Seattle Children's Research Institute, Seattle, Washington 98109, USA Departments of Pediatrics and Biochemistry, University of Washington, Seattle, Washington 98195, USA (1)
Charles University in Prague Faculty of Science, Department of Parasitology BIOCEV Průmyslová 595 252 50 Vestec Czech Republic (1)
Core Facility Proteomics, Department of Clinical Chemistry, University Medical Center Goettingen, Germany (1)
Department of Biochemistry and Molecular Biology, School of Basic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, Hubei 430032, China (1)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 14061, United States (1)
Department of Biological Sciences, University of Bergen, Bergen, Norway (1)
Department of Biological Sciences, Vanderbilt University (1)
Department of Pediatrics, University of Groningen, University Medical Center Groningen, Groningen, the Netherlands. (1)
Duke University Department of Cell Biology (1)
Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD/NIH) Section on Cell Cycle Regulation Building 49, Room 5A30 49 Convent Drive Bethesda, MD 20892-4480 (1)
Genetik eukaryotischer Mikroorganismen, Institut für Mikrobiologie und Genetik, Göttingen, Germany (1)
Head of Drug Discovery and Evaluation Charles University in Prague, BIOCEV Průmyslová 595 252 50 Vestec Czech Republic phone: +420 325 873 966 (1)
Head of Drug Discovery and Evaluation Center for Research of Pathogenicity and Virulence of Parasites Charles University in Prague, BIOCEV Průmyslová 595 252 50 Vestec Czech Republic phone: +420 325 873 966 (1)
Head of Drug Discovery and Evaluation Charles University in Prague, BIOCEV Průmyslová 595 252 50 Vestec Czech Republic (1)
Head of Drug Discovery and Evaluation, Charles University in Prague, Department of Parasitology, BIOCEV, Průmyslová 595, 252 50 Vestec, Czech Republic (1)
Institute of Biochemistry and Molecular Cell Biology, Medical School, RWTH Aachen University, 52074 Aachen, Germany (1)
Izabela Sumara, Institute of Genetics and Molecular and Cellular Biology (IGBMC), Illkirch, France (1)
Leibniz Institute on Aging – Fritz Lipmann Institute (FLI), Jena, Germany (1)
Mark C. Field Professor of Cell Biology and Parasitology Division of Biological Chemistry & Drug Discovery School of Life Sciences University of Dundee Dundee United Kingdom (1)
Max-Delbrück-Centre for Molecular Medicine in the Helmholtz Association (1)
National Key Lab of Agricultural Microbiology, College of Life Science and Technology, Huazhong Agricultural University (1)
Plant & Microbial Biology, Gu lab, University of California, Berkeley, USA (1)
Professor at Department of Medical Biochemistry and Microbiology; Biochemistry and Cancer;Uppsala University, Sweden (1)
Professor of Mass Spectrometry, Structural & Molecular Biology, UCL (1)

Previous page
1 / 89
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 89
Next page

Sort by:

Relevance

Page size

Nucleoporin Nup153 Regulates Stem Cell Pluripotency through Gene Silencing

Nucleoporins (Nups) are a family of proteins best known as the constituent building blocks of nuclear pore complexes (NPCs), the transport channels that mediate nuclear transport. Recent evidence suggest that several Nups have additional roles in controlling the activation and silencing of developme...

ORGANISM(S): Mus musculus

2015-06-19 | E-GEOD-64008 | biostudies-arrayexpress

Transcription profiling of mouse adult bone marrow cells reveals candidate genes form expansion and transformation of hematopoietic stem cells by NUP98-HOX Fusion Genes

BACKGROUND: Hox genes are implicated in hematopoietic stem cell (HSC) regulation as well as in leukemia development through translocation with the nucleoporin gene NUP98. Interestingly, an engineered NUP98-HOXA10 (NA10) fusion can induce a several hundred-fold expansion of HSCs in vitro and NA10 and...

ORGANISM(S): Mus musculus

2008-06-17 | E-GEOD-9079 | biostudies-arrayexpress

Transcription profiling of mouse NUP98-NSD1 transformed samples reveals NUP98-NSD1 links H3K36 methylation to Hox-A gene activation and leukaemogenesis. INCOMPLETE DATASET

Nuclear receptor-binding SET domain protein 1 (NSD1) prototype is a family of mammalian histone methyltransferases (NSD1, NSD2/MMSET/WHSC1, NSD3/WHSC1L1) that are essential in development and are mutated in human acute myeloid leukemia (AML), overgrowth syndromes, multiple myeloma and lung cancers. ...

ORGANISM(S): Mus musculus

2008-06-11 | E-GEOD-10071 | biostudies-arrayexpress

Deletion of nucleoporin Seh1 impaired neurogenesis through transcriptional regulation (ChIP-Seq)

PRJNA976911 | ENA

Altered localization of nucleoporin 98 in primary tauopathies.

Not available

S-EPMC9806717 | biostudies-literature

Nucleoporin Seh1 controls murine neocortical development via transcriptional repression of p21 in neural stem cells

PRJNA846167 | ENA

Deletion of nucleoporin Seh1 impaired neurogenesis through transcriptional regulation (ChIP-Seq)

Nucleoporin Seh1 and chromodomain helicase DNA binding protein 4 have been involved in gene regulation. To dissect direct regulated genes, we performed chromatin immunoprecipitation DNA-sequencing (ChIP-seq) for nucleoporin Seh1 or chromodomain helicase DNA binding protein 4 in neural stem cells.

ORGANISM(S): Mus musculus

2023-05-29 | GSE233613 | GEO

Nucleoporin Seh1 controls murine neocortical development via transcriptional repression of p21 in neural stem cells

Nucleoporin Seh1 has been involved in gene regulation. To dissect nucleoporin's direct regulated genes, we performed chromatin immunoprecipitation DNA-sequencing (ChIP-seq) for nucleoporin Seh1 in neural stem cells.

ORGANISM(S): Mus musculus

2022-06-09 | GSE205508 | GEO

Nup98 is a mobile nucleoporin with transcription-dependent dynamics.

Not available

S-EPMC102269 | biostudies-literature

transcriptional profiling of NUP98-CDX1, NUP98-CDX4 and EGFP overexpressing primitive mouse bone marrow cells

The first genetic hits towards leukemia are thought often to confer to the mutant clone a slight proliferative/survial advantage. These pre-malignant clones can then be maintained under physiological cues in normal pool for long periods. We have searched for this type of first genetic hits and found...

ORGANISM(S): Mus musculus

2012-12-01 | E-GEOD-37900 | biostudies-arrayexpress

Previous page
1 / 89
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 89
Next page

Sort by:

Relevance

Page size

882 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

CHEBI ID

Metabolite Name

First Public Date

Modification

Study type

Release Date

Lab affiliation

Tags

OmicsDI is part of the ELIXIR infrastructure

Tweets