O'Connor K K - OmicsDI

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Unknown (1775)
Proteomics (27)
Transcriptomics (22)
Genomics (12)
Metabolomics (4)

Organisms

Homo sapiens (40)
Mus musculus (8)
Zea mays (2)
Rattus norvegicus (2)
Saccharomyces cerevisiae (2)
Pseudomonas umsongensis (2)
Escherichia coli (1)
Cinchona pubescens (1)
Paramoeba perurans (1)
Pseudomonas putida KT2440 (1)

Organisms

Homo sapiens (1)

Repository

pride (24)
biostudies-arrayexpress (22)
EGA (10)
MetaboLights (4)
MassIVE (2)
geo (1)
PanoramaPublic (1)
ENA (1)

Tissue

Liver (3)
Epithelial cell (2)
Hepatoma cell line (2)
SNU-475 cell (2)
Blood (1)
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Thyroid gland (1)

Disease

Hepatocellular carcinoma (3)
Hypotension (1)
Normal (1)
Alzheimer's disease (1)
Cystic fibrosis (1)
Joint inflammation (1)

Technology Type

Mass Spectrometry (24)
Bottom-up proteomics (11)
Shotgun proteomics (8)
Data-dependent acquisition (6)
Mass spectrometry (3)
Top-down proteomics (2)
Illumina Infinium 1.2M (1)
Unknown (1)
NMR spectroscopy (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-independent acquisition (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (2)
Orbitrap Exploris 480 (1)
TripleTOF 5600 (1)
TripleTOF 6600 (1)
Bruker (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2026 (7)
2025 (6)
2015 (5)
2024 (5)
2012 (4)
2022 (4)
2016 (2)
2014 (2)
2013 (2)
2011 (2)
2010 (2)
2008 (2)
2007 (2)
2021 (2)
2020 (2)
2009 (1)
2006 (1)
2023 (1)
2018 (1)
2017 (1)

CHEBI ID

CHEBI:16449 (2)
CHEBI:18186 (2)
CHEBI:24898 (2)
CHEBI:25017 (2)
CHEBI:26271 (2)
CHEBI:27266 (2)
CHEBI: (1)
CHEBI: 28364 (1)
CHEBI:15354 (1)
CHEBI:15361 (1)
CHEBI:15428 (1)
CHEBI:15843 (1)
CHEBI:15891 (1)
CHEBI:16196 (1)
CHEBI:16454 (1)
CHEBI:16737 (1)
CHEBI:16811 (1)
CHEBI:16870 (1)
CHEBI:17126 (1)
CHEBI:17234 (1)
CHEBI:17351 (1)
CHEBI:18132 (1)
CHEBI:18211 (1)
CHEBI:18237 (1)
CHEBI:18257 (1)
CHEBI:21374 (1)
CHEBI:24996 (1)
CHEBI:25094 (1)
CHEBI:26986 (1)
CHEBI:271436 (1)

Metabolite Name

Isoleucine (2)
Proline (2)
Threonine (2)
Valine (2)
(+)-ar-Turmerone (1)
(2E)-3-(3,4-dimethoxyphenyl)prop-2-enoic acid (1)
(2R)-5-hydroxy-7-methoxy-2-phenyl-3,4-dihydro-2H-1-benzopyran-4-one (1)
(3,4-Dimethoxyphenyl)acetic acid (1)
(9cis)-Retinal (1)
(R)-Equol (1)
(S)-Equol (1)
(S)-Leucic acid (1)
1,4-Dihydro-1-Methyl-4-Oxo-3-Pyridinecarboxamide (1)
1,7-Diphenylhept-4-en-3-one (1)
1-(4-Methoxyphenyl)-2-propanone (1)
1-Aminocyclohexanecarboxylic acid (1)
1-Methyladenosine (1)
1-Methylguanine (1)
1-Methylguanosine (1)
1-Methylhistidine (1)
1-Methylnicotinamide (1)
1-Methyluric acid (1)
1-Methylxanthine (1)
1-Palmitoyl-Sn-Glycero-3-Phosphocholine (1)
10-Nitrolinoleate (1)
10-Undecenoic acid (1)
11-Oxoetiocholanolone (1)
11¦Â-Hydroxyandrosterone (1)
13-HPODE (1)
13-OxoODE (1)

First Public Date

2014 (1)

Study type

Transcription profiling by array (15)
RNA-seq of coding RNA (3)
Comparative genomic hybridization by array (2)
ChIP-seq (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (221)
2023 (210)
2025 (204)
2024 (194)
2021 (177)
2020 (120)
2019 (106)
2018 (86)
2017 (72)
2016 (67)
2015 (66)
2014 (50)
2013 (40)
2026 (35)
2012 (31)
2010 (31)
2009 (28)
2011 (24)
2008 (9)
2007 (7)
2006 (6)
2005 (4)
2004 (3)
2000 (2)
2003 (1)
2002 (1)
2001 (1)
1997 (1)

Lab affiliation

University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (3)
Professor in Microbiology and Biochemistry School of Biomolecular and Biomedical Science https://www.ucd.ie/sbbs/ BiOrbic https://biorbic.com UCD O'Brien Centre for Science 4th Floor, room E4.09 University College Dublin Belfield D4, Ireland (2)
Centre for Targeted Protein Degradation (CeTPD) University of Dundee (1)
Department of Biochemistry and Pharmacology, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, 30 Flemington Road, Parkville, Victoria 3052 Australia (1)
Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, Minneapolis, MN, USA (1)
Department of Biological Sciences Xi'an Jiaotong-Liverpool University (XJTLU) China (1)
Department of Cellular and Molecular Medicine, Faculty of Medicine, University of Ottawa, Ottawa, Ontario, Canada. (1)
Department of Cellular and Molecular Medicine, University of Ottawa, Ottawa, ON, Canada. (1)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, USA (1)
Group Leader School of Biomolecular and Biomedical Science Room F058, Conway Institute, University College Dublin, Belfield, Dublin 4, IRELAND (1)
Marine and Freshwater Research Centre, GMIT (1)
Max-Planck Institute for Chemical Ecology, Department of Natural Product Biosynthesis (1)
Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kgs. Lyngby, Denmark (1)
Physikalisch-Technische Bundesanstalt (PTB), 38116 Braunschweig, Germany (1)
Proteomics, Leibniz-Institut für Analytische Wissenschaften - ISAS - e.V., Germany (1)
School of Biomolecular and Biomedical Science, University College Dublin, Belfield, Dublin 4, Ireland (1)
The Scripps Research Institute (1)
Translational Genomic Research Institute (1)
Trinity College Dublin: Dublin, IE (1)
Turku Centre for Biotechnology, University of Turku and Åbo Akademi University, Turku, Finland (1)
University College Dublin, SBBS, Conway Institute, Dublin (1)

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A novel dual-fluorescence strategy for functionally validating microRNA targets in 3' untranslated regions: regulation of the inward rectifier potassium channel K(ir)2.1 by miR-212.

Not available

S-EPMC3475433 | biostudies-literature

Whole genome sequence analysis of low-density lipoprotein cholesterol across 246 K individuals.

Not available

S-EPMC12418676 | biostudies-literature

BW25113 H202 and delta rpoS persister cells vs. stationary phase BW25113 wild-type

E. coli K-12 BW25113 persister cells generated via H202 pre-treatment and deletion of rpoS, relative to BW25113 wild-type stationary phase gene expression. Persister cells were generated following exposure to ampicillin 20 ug/mL. Strains: BW25113 wild-type, pre-treated with H202 10 min, ampicillin 5...

ORGANISM(S): Escherichia coli

2012-04-02 | E-GEOD-34028 | biostudies-arrayexpress

Transcription profiling of human airway epithelium, large airways, phenotypically normal smokers vs non-smokers, MAS5 (HuGeneFL)

Upregulation of Expression of the Ubiquitin Carboxyl Terminal Hydrolase L1 Gene in Human Airway Epithelium of Cigarette Smokers; The microarray data deposited here is from 44 HuGeneFL GeneChips, from 9 normal non-smokers and 13 phenotypic normal smokers, large airways, 2 samples per individual, one ...

ORGANISM(S): Homo sapiens

2008-11-07 | E-GEOD-5056 | biostudies-arrayexpress

Airway epithelium, large airways, phenotypically normal smokers vs non-smokers, MAS5 (HuGeneFL)

Upregulation of Expression of the Ubiquitin Carboxyl Terminal Hydrolase L1 Gene in Human Airway Epithelium of Cigarette Smokers The microarray data deposited here is from 44 HuGeneFL GeneChips, from 9 normal non-smokers and 13 phenotypic normal smokers, large airways, 2 samples per individual, one f...

ORGANISM(S): Homo sapiens

2006-11-21 | GSE5056 | GEO

Tumor-Specific T-Cells Engineered to Overcome Tumor Immune Evasion Induce Clinical Responses in Patients With Relapsed Hodgkin Lymphoma.

Not available

S-EPMC5891126 | biostudies-literature

Spectrum of K_V 2.1 Dysfunction in KCNB1-Associated Neurodevelopmental Disorders.

Not available

S-EPMC7025436 | biostudies-literature

Distal and Proximal Predictors of Rehospitalization Over 10 Years Among Survivors of TBI: A National Institute on Disability, Independent Living, and Rehabilitation Research Traumatic Brain Injury Model Systems Study.

Not available

S-EPMC9985661 | biostudies-literature

The Longitudinal Effects of Comorbid Health Burden on Functional Outcomes for Adults With Moderate to Severe Traumatic Brain Injury.