O'Neill S S - OmicsDI

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Unknown (1671)
Proteomics (34)
Transcriptomics (33)
Metabolomics (15)
Models (1)
Genomics (1)

Organisms

Homo sapiens (24)
Mus musculus (22)
Rattus norvegicus (8)
Fasciola hepatica (4)
Ostreococcus tauri (3)
Bombus terrestris (2)
Euglena gracilis (2)
Brassica oleracea var. alboglabra (1)
Staphylococcus aureus (1)
Bos taurus (1)
Lama glama (1)
Mycobacterium tuberculosis (1)
Mycobacterium tuberculosis H37Rv (1)
Mycobacterium tuberculosis SP1 (1)
Mycobacterium tuberculosis SP10 (1)
Mycobacterium tuberculosis SP13 (1)
Mycobacterium tuberculosis SP22 (1)
Mycobacterium tuberculosis SP7 (1)
Plasmodium falciparum (1)

Repository

biostudies-arrayexpress (34)
pride (33)
MetaboLights (10)
GNPS (5)
BioModels (1)
MassIVE (1)

Tissue

Cell culture (8)
Brain (4)
Bone marrow macrophage (2)
Breast (2)
Epithelial cell (2)
Fibroblast (2)
Blood (1)
Cerebral cortex pyramidal neuron (1)
Esophageal adenocarcinoma cell (1)
Esophageal squamous epithelium (1)
Esophagus (1)
Esophagus squamous epithelium (1)
Extracellular exosome assembly (1)
Gastric epithelium (1)
Glutamatergic neuron (1)
Hepatocyte (1)
Integument (1)
Liver (1)
Lung (1)
Neuronal stem cell (1)
Pancreatic ductal adenocarcinoma cell (1)
Primary cell line (1)
Protein secretion (1)
Secretory cell (1)
Venom (1)
Whole body (1)

Disease

Acute leukemia (1)
Barrett's adenocarcinoma (1)
Brain glioblastoma multiforme (1)
Breast cancer (1)
Disease free (1)
Esophageal cancer (1)
Fascioliasis (1)
Gastroesophageal adenocarcinoma (1)
Liver cancer (1)
Pancreatic ductal adenocarcinoma (1)
Periventricular nodular heterotopia (1)

Technology Type

Mass Spectrometry (33)
Shotgun proteomics (22)
Mass spectrometry (8)
Bottom-up proteomics (6)
Affinity purification coupled with mass spectrometry proteomics (5)
Mass spectrometry assay (2)
Gel-based experiment (2)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (6)
Liquid Chromatography MS - negative - hilic (2)
Illumina Genome Analyzer IIx (1)
Axon- GenePix4000B (1)
6520A Quadrupole Time-of-Flight LC/MS (1)
Impact (1)
LCMS-2010A (1)
LCMS-IT-TOF (1)
LTQ FT (1)
MaXis (1)
LTQ Orbitrap (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive (1)

Publication Date

2013 (18)
2023 (9)
2021 (7)
2020 (6)
2019 (5)
2015 (5)
2014 (4)
2026 (4)
2024 (3)
2016 (3)
2012 (3)
2007 (3)
2025 (3)
2022 (3)
2008 (2)
2018 (2)
2011 (1)
2009 (1)
2017 (1)

UNIPROT ID/AC

P92973 (1)
Q9LKL2 (1)

CHEBI ID

CHEBI:16359 (3)
CHEBI:28865 (3)
CHEBI:30769 (3)
CHEBI:35038 (3)
CHEBI:139138 (2)
CHEBI:143745 (2)
CHEBI:143757 (2)
CHEBI:15422 (2)
CHEBI:15603 (2)
CHEBI:15741 (2)
CHEBI:15846 (2)
CHEBI:15978 (2)
CHEBI:16027 (2)
CHEBI:16077 (2)
CHEBI:16108 (2)
CHEBI:16474 (2)
CHEBI:16708 (2)
CHEBI:16761 (2)
CHEBI:16856 (2)
CHEBI:16908 (2)
CHEBI:17138 (2)
CHEBI:17191 (2)
CHEBI:173703 (2)
CHEBI:17561 (2)
CHEBI:17895 (2)
CHEBI:18009 (2)
CHEBI:18012 (2)
CHEBI:182784 (2)
CHEBI:25078 (1)
CHEBI:33699 (1)

Metabolite Name

Cholic acid (3)
Tris(2-butoxyethyl) phosphate (3)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
9(10)-EpOME (2)
ADP (2)
AMP (2)
ATP (2)
Alpha-linolenic acid|linolenic acid|(9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid (2)
Citric acid (2)
Dibutyl phthalate (DBP) (2)
Elaidic acid (2)
Isoleucine (2)
Leucine (2)
Lyso-PC(16:0) (2)
Methionine (2)
Monoolein (2)
NAD+ (2)
NADH (2)
NADP+ (2)
NADPH (2)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (2)
Phenylalanine (2)
Succinate (2)
Taurocholic acid (2)
Threonine (2)
Valine (2)
(R)-4-((3R,4R,5S,8S,9S,10R,13R,14S,17R)-3,4-dihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)

IsPrivate

False (1)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (25)
ChIP-chip by array (3)
RNA-seq of coding RNA (3)
Unknown experiment type (1)
Animal - One-color microarray (1)
ChIP-seq (1)

Release Date

2025 (182)
2021 (181)
2023 (174)
2022 (171)
2024 (159)
2020 (157)
2018 (121)
2019 (104)
2016 (64)
2017 (62)
2015 (61)
2014 (53)
2013 (46)
2012 (43)
2011 (30)
2026 (25)
2009 (23)
2010 (12)
2008 (11)
2007 (11)
2005 (4)
2004 (3)
2006 (2)
2002 (2)
2001 (2)
2000 (1)
1999 (1)

Lab affiliation

-The Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade, Parkville, Victoria 3052, Australia. -Department of Medical Biology, University of Melbourne, Parkville, Victoria 3010, Australia. (1)
Bavarian Center for Biomolecular Mass Spectrometry at Klinikum rechts der Isar Technical University of Munich (1)
Caris Science Inc (1)
Cell Signalling & Immunology, School of Life Sciences, University of Dundee (1)
Department of Biochemistry and Microbiology, L-Probe Lab Ghent University (1)
Department of Oncology, University of Oxford, OX3 7DQ, UK (1)
Department of Physiological Genomics, Biomedical Center, Ludwig-Maximilians University, Germany (1)
Departmento de Bioquíimica y Biologíia Molecular, Universitat de Valèencia, Burjassot, Valencia, Spain (1)
Discovery Proteomics Facility, Oxford (1)
Division of Cell Signalling and Immunology, School of Life Sciences, University of Dundee (1)
Division of Oncology and Pathology, Dept. of Clinical Sciences Lund, Lund University, Lund, Sweden (1)
Head of School, Senior Lecturer, School of Biotechnology, Fundamental and Translational Immunology Group Leader Dublin City University, Dublin 9. Ireland (1)
Institute of Genetics and Cancer (IGC), University of Edinburgh, Edinburgh, Scotland (1)
Institute of Pharmacology and Toxicology, Jena University Hospital, Friedrich Schiller University Jena, Drackendorfer Str. 1, 07747, Jena, Germany (1)
International Center for Cancer Vaccine Science (ICCVS), University of Gdansk, Gdansk, Poland (1)
MD, PhD, DSc Head of laboratory of Molecular microbial genetics Research Institute of Physical-Chemical ( lab head ) (1)
MRC Laboratory of Molecular Biology, Cambridge, CB2 0QH, United Kingdom (1)
MRC Laboratory of Molecular Biology, Francis Crick Avenue,Cambridge, UK (1)
MRC-LMB, Francis Crick Avenue, Cambridge Biomedical Campus, Cambridge, CB2 0QH (1)
Max Planck Institute of Psychiatry Kraepelinstrasse 2 80804 Munich Germany (1)
Max-Planck Institute of Psychiatry (1)
Maynooth University Department of Biology Maynooth University, Maynooth, Co. Kildare, Ireland. (1)
National Institute for Cellular Biotechnology, Dublin City University (1)
Professor in Infectious Diseases School of Biological Sciences Medical Biology Centre (MBC) Queen's University Belfast Belfast UK (1)
Professor of Cell Biology & Parasitology Wellcome Centre for Anti-Infectives Research Division of Biological Chemistry & Drug Discovery School of Life Sciences University of Dundee Dundee DD1 5EH United Kingdom (1)
Reader, School of Biological Science, University of Edinburgh (1)
School of Biological Sciences Medical Biology Centre Queen's University Belfast Belfast, N. Ireland (1)
SynthSys – Synthetic and Systems Biology (1)
Target Discovery Institute, University of Oxford (1)
University of Geneva (1)

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Induction of SARS-CoV-2 Protein S-Specific CD8+ T Cells in the Lungs of gp96-Ig-S Vaccinated Mice.

Not available

S-EPMC7873992 | biostudies-literature

GNPS Euglena fungi bacteria mix grown on S/W Bi extracted with EtOAC

ORGANISM(S): Euglena (ncbitaxon:3038)

2020-11-11 | MSV000086436 | GNPS

GNPS TEST Euglena fungi bacteria mix grown on S/W Bi extracted with EtOAC

ORGANISM(S): Euglena (ncbitaxon:3038)

2020-11-12 | MSV000086443 | GNPS

GNPS Euglena fungi bacteria mix grown on S/W Bi extracted with EtOAC Complete

ORGANISM(S): Euglena (ncbitaxon:3038)

2020-11-12 | MSV000086441 | GNPS

Glutathione-S-transferase M1, obesity, statins, and autonomic effects of particles: gene-by-drug-by-environment interaction.

Not available

S-EPMC2718454 | biostudies-literature

Estrogen receptor α is required for oviductal transport of embryos.

Not available

S-EPMC5349796 | biostudies-literature

Competition between skin antimicrobial peptides and commensal bacteria in type 2 inflammation enables survival of S. aureus.

Not available

S-EPMC10303920 | biostudies-literature

Mutagenesis mapping of the protein-protein interaction underlying FusB-type fusidic acid resistance.

Not available

S-EPMC3811445 | biostudies-literature

Priming COVID-19's consequences can increase support for investments in public health.

Not available

S-EPMC10019036 | biostudies-literature

Transcription profiling of human CD133+ immature blasts from patients with AML/RAEB

CD133-positive immature blasts were purified from bone marrow of the patients. Total RNA was extracted by RNeasy mini spin column (Qiagen, Inc). SUBMITTER_CITATION: Yamashita Y, Ohashi J, Hirai Y, Choi YL, Kaneda R, Fujiwara S-i, Arai Y, Akutsu M, Tsutsumi C, Miyazaki Y, Usuki K, Teramura M, Mitani ...

ORGANISM(S): Homo sapiens

2008-06-12 | E-GEOD-1427 | biostudies-arrayexpress

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