Oh U U - OmicsDI

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Unknown (2604)
Transcriptomics (1989)
Genomics (191)
Metabolomics (73)
Proteomics (35)
Genomic (6)
Models (2)
Other (1)

Organisms

Homo sapiens (690)
Mus musculus (428)
Saccharomyces cerevisiae (156)
Arabidopsis thaliana (144)
Drosophila melanogaster (97)
Rattus norvegicus (63)
Schizosaccharomyces pombe (45)
Caenorhabditis elegans (40)
Streptomyces coelicolor (23)
Apis mellifera (19)
Candida albicans (17)
Escherichia coli (15)
Sus scrofa (12)
Clostridium acetobutylicum (10)
Enterococcus faecalis (10)
Bos taurus (10)
Gallus gallus (10)
Chlorocebus sabaeus (9)
Triticum aestivum (9)
Campylobacter jejuni (8)
Mycobacterium tuberculosis (8)
Pseudomonas putida (8)
Biomphalaria glabrata (7)
Bacillus amyloliquefaciens (7)
Salmonella enterica subsp. enterica serovar Typhimurium (7)
Pseudomonas aeruginosa (7)
Danio rerio (7)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (6)
Listeria monocytogenes (6)
Streptococcus pneumoniae (6)

Organisms

synthetic construct (2)
Homo sapiens (1)
Rattus norvegicus (1)

Repository

biostudies-arrayexpress (2192)
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pride (21)
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geo (1)
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Tissue

Cell culture (5)
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Disease

Normal (20)
Breast cancer (5)
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Squamous Cell Carcinoma (2)
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Papillary thyroid carcinoma (2)
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Chronic myelogenous leukemia (2)
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Carcinoma (2)
Adenocarcinoma (2)
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Large cell carcinoma (1)
Invasive pituitary adenoma (1)
Hepatocellular carcinoma-non tumorous region (1)
T. circumcincta infection (1)
B-cell chronic lymphocytic leukemia (1)
CUP (1)
Ependymoma (1)
Myeloid neoplasm (1)

Technology Type

Mass spectrometry (41)
Mass Spectrometry (28)
NMR spectroscopy (14)
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ESI (7)
Affinity purification coupled with mass spectrometry proteomics (6)
Bottom-up proteomics (2)
MSE (2)
SRM/MRM (2)
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Data-independent acquisition (1)
SWATH MS (1)

Instrument Platform

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Illumina HiSeq 2500 (28)
Illumina HiSeq 2000 (23)
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NextSeq 550 (15)
Illumina HiSeq 4000 (15)
Illumina MiSeq (10)
GenePix 4000A [Axon Instruments] (9)
Affymetrix Fluidics Station 400 (7)
NextSeq 2000 (7)
Illumina HiSeq 1500 (7)
Microcentrifuge (6)
ScanArray 5000 [PerkinElmer] (6)
Illumina Genome Analyzer II (6)
GenePix Personal 4100A [Axon Instruments] (5)
G2565AA DNA microarray scanner [Agilent] (5)
G2565BA DNA microarray scanner [Agilent] (5)
GenePix 4000B [Axon Instruments] (5)
Scanning hardware (5)
Vortex (5)
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418 [Affymetrix] (4)
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Illumina HiSeq 3000 (3)

Publication Date

2010 (336)
2013 (256)
2012 (215)
2014 (189)
2011 (170)
2015 (168)
2009 (132)
2007 (124)
2008 (123)
2006 (81)
2016 (80)
2005 (72)
2021 (42)
2023 (41)
2025 (33)
2022 (33)
2018 (32)
2026 (30)
2020 (30)
2024 (29)
2004 (29)
2017 (20)
2019 (19)
2003 (7)

UNIPROT ID/AC

A0A0K0LT60 (1)
A0A0K0LT76 (1)
A0A0U5A9X2 (1)
A0A185IIQ0 (1)
A0A1S2WYT7 (1)
A0A1S2WZD5 (1)
A0A1S2WZE0 (1)
A0A1S2X0C2 (1)
A0A1S2X0R8 (1)
A0A1S2X277 (1)
A0A1S2X3Z6 (1)
A0A1S2X522 (1)
A0A1S3KHY8 (1)
A0A1S3KID5 (1)
A0A1S3KIG1 (1)
A0A1S3KIR7 (1)
A0A1S3KIT4 (1)
A0A1S3KIV7 (1)
A0A1S3KJ55 (1)
A0A1S3KJA5 (1)
A0A1S3KJH9 (1)
A0A1S3KJJ6 (1)
A0A1S3KJN3 (1)
A0A1S3KJP4 (1)
A0A1S3KJR3 (1)
A0A1S3KJV8 (1)
A0A1S3KKD5 (1)
A0A1S3KKF6 (1)
A0A1S3KKM1 (1)
A0A1S3KKT1 (1)

CHEBI ID

CHEBI:1 (1)
CHEBI:10059 (1)
CHEBI:10066 (1)
CHEBI:10067 (1)
CHEBI:10078 (1)
CHEBI:1021 (1)
CHEBI:1022 (1)
CHEBI:10231 (1)
CHEBI:10232 (1)
CHEBI:10246 (1)
CHEBI:10269 (1)
CHEBI:10270 (1)
CHEBI:10317 (1)
CHEBI:10343 (1)
CHEBI:10375 (1)
CHEBI:10433 (1)
CHEBI:10489 (1)
CHEBI:10490 (1)
CHEBI:10491 (1)
CHEBI:10492 (1)
CHEBI:10493 (1)
CHEBI:10494 (1)
CHEBI:10495 (1)
CHEBI:10496 (1)
CHEBI:10497 (1)
CHEBI:10500 (1)
CHEBI:10529 (1)
CHEBI:10530 (1)
CHEBI:10531 (1)
CHEBI:10532 (1)

Metabolite Name

Creatine (16)
Choline (13)
Glutamine (13)
Hypoxanthine (13)
Inosine (13)
Phenylalanine (13)
Betaine (12)
Citric acid (12)
Taurine (12)
Valine (12)
Creatinine (11)
Glutamate (11)
Glycine (11)
Proline (11)
Uridine (11)
Adenine (10)
Adenosine (10)
Cytidine (10)
Histidine (10)
Pyruvate (10)
Tyrosine (10)
Alanine (9)
Arginine (9)
Leucine (9)
Linoleic acid (9)
Lysine (9)
Tryptophan (9)
Uracil (9)
Asparagine (8)
Carnitine (8)

IsPrivate

False (1)

First Public Date

2023 (2)
2022 (1)
2014 (1)

Modelling Approach

Constraint-based model (1)

Modification

Not available (1)

Study type

Transcription profiling by array (1273)
RNA-seq of coding RNA (209)
ChIP-seq (125)
ChIP-chip by tiling array (78)
Comparative genomic hybridization by array (78)
Other (75)
ChIP-chip by array (51)
Methylation profiling by high throughput sequencing (41)
Unknown experiment type (35)
RNA-seq of non coding RNA (34)
Transcription profiling by tiling array (30)
Methylation profiling by array (23)
Ribo-seq (13)
DNA-seq (13)
Cell line - High-throughput sequencing (11)
Hi-C (8)
RNAi profiling by array (7)
RNA-seq of total RNA (6)
MicroRNA profiling by array (5)
RIP-chip by array (4)
Translation profiling (4)
Animal - High-throughput sequencing (4)
Genotyping by array (4)
RIP-seq (4)
High-throughput sequencing (3)
4C (3)
Proteomic profiling by array (3)
CUT&RUN (3)
Animal - One-color microarray (2)
Capture-C (2)

Release Date

2010 (356)
2013 (331)
2022 (307)
2021 (286)
2014 (283)
2023 (275)
2024 (274)
2015 (268)
2012 (267)
2025 (247)
2020 (228)
2011 (214)
2018 (205)
2016 (197)
2019 (187)
2017 (166)
2009 (162)
2008 (137)
2007 (135)
2006 (90)
2005 (78)
2026 (54)
2004 (33)
2003 (12)
2002 (3)
2000 (1)

Lab affiliation

Professor. Department of Biology and Biological Engineering, Chalmers University of Technology, SE-41296 Gothenburg, Sweden; Wallenberg Center for Protein Research, Chalmers University of Technology, SE-41296 Gothenburg, Sweden; Novo Nordisk Foundation Center for Biosustainability, Chalmers University of Technology, SE-41296 Gothenburg, Sweden; Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, DK-2800 Lyngby, Denmark (3)
1. Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany 2. Wellcome Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH93BF, United Kingdom ( lab head ) (1)
1.Center for Translational Vision Research, Gavin Herbert Eye Institute, Department of Ophthalmology, University of California-Irvine, Irvine, CA 92697, USA 2.Department of Ophthalmic Research, Cleveland Clinic, Cleveland, OH 44195, USA 3.Department of Physiology & Biophysics, School of Medicine, University of California-Irvine, Irvine, CA 92697, USA (1)
Boll Lab / Microbiology / Institute of Biology II / University of Freiburg (1)
Capital Normal University (1)
Cardiovascular and Metabolic Sciences, Max Delbrück Center for Molecular Medicine in the Helmholtz Association (MDC), 13125 Berlin, Germany (1)
Department of Biological Chemistry and Pharmacology, The Ohio State University, Columbus, OH 43210, USA. Center for RNA Biology, The Ohio State University, Columbus, OH 43210, USA. (1)
Department of Internal Medicine, School of Medicine, Kyungpook National University, Kyungpook National University Hospital, Daegu, Republic of Korea (1)
Department of Microbiology, The Ohio State University, Columbus OH (1)
Institute for Biological Resources and Marine Biotechnologies (CNR), Italian National Research Council, Messina, Italy (1)
Institute for Diabetes and Obesity, Helmholtz Zentrum München, Neuherberg, Germany. and German Center for Diabetes Research (DZD), Neuherberg, Germany;d German Center for Diabetes Research, Neuherberg, Germany (1)
Organic Chemistry/Cellular Chemistry, Department of Chemistry, University of Konstanz (1)
Professor, Department of Biology and Biological Engineering, Chalmers University of Technology, SE-41296 Gothenburg, Sweden; Wallenberg Center for Protein Research, Chalmers University of Technology, SE-41296 Gothenburg, Sweden; Novo Nordisk Foundation Center for Biosustainability, Chalmers University of Technology, SE-41296 Gothenburg, Sweden; Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, DK-2800 Lyngby, Denmark (1)
Proteomics Core Facility, University of Gothenburg (1)
School of Biological Sciences, Nanyang Technological University, 637551, Singapore (1)
Technical University of Munich, School of Medicine, Institute of Virology, 81675 Munich, Germany (1)
Technical University of Munich, School of Medicine, Institute of Virology, Munich, Germany (1)
UC Proteomics Laboratory Department of Cancer Biology University of Cincinnati Cincinnati, OH 45267 (1)
Univ. Bordeaux, Plateforme Proteome, 33000, Bordeaux, France (1)

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xref:PubMed:20005135 (1)

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Structural insights of non-canonical U*U pair and Hoogsteen interaction probed with Se atom.

Not available

S-EPMC3905866 | biostudies-literature

An Ustilago maydis gene involved in H2O2 detoxification is required for virulence

The fungus Ustilago maydis is a biotrophic pathogen of corn. In its genome we have identified an ortholog of YAP1 from Saccharomyces cerevisae which regulates the oxidative stress response in this organism. yap1 mutants of U. maydis displayed higher sensitivity to H2O2 than wild type cells and their...

ORGANISM(S): Ustilago maydis

2010-06-11 | E-GEOD-7518 | biostudies-arrayexpress

The response of Desulfotomaculum reducens MI-1 to U(VI) exposure: a transcriptomic study

Desulfotomaculum reducens is the first Gram-positive sulfate- and metal- reducing bacterium for which the transcriptomic response to uranium exposure has been evaluated. The genes upregulated during fermentative growth in the presence of U(VI) as compared to its absence included those encoding for p...

ORGANISM(S): Desulfotomaculum reducens MI-1

2010-07-15 | E-GEOD-22944 | biostudies-arrayexpress

Efficacy and safety of upadacitinib maintenance therapy in patients with moderately to severely active Crohn's disease: 2-year results from the U-ENDURE Long-Term Extension study.

Not available

S-EPMC12459986 | biostudies-literature

Crystal structure of vyacheslavite, U(PO₄)(OH), solved from natural nanocrystal: a precession electron diffraction tomography (PEDT) study and DFT calculations.

Not available

S-EPMC9065332 | biostudies-literature

Studies of aqueous U(iv) equilibrium and nanoparticle formation kinetics using spectrophotometric reaction modeling analysis.

Not available

S-EPMC9057037 | biostudies-literature

Functionalized Sugarcane Bagasse for U(VI) Adsorption from Acid and Alkaline Conditions.