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TranscriptomicsTranscription profiling of rat nucleus accumbens of alcohol-preferring animals following chronic ethanol consumption
This study investigated changes in gene expression associated with ethanol drinking in adult male P rats under the following conditions for 8 weeks: continuous access (24 hr/day, 7 days/week), multiple scheduled access (three 1-hr sessions during the dark cycle/day, 5 days/week) and ethanol-naive (w...
ORGANISM(S): Rattus norvegicus 
2009-09-25 | E-GEOD-13524 | biostudies-arrayexpress
ProteomicsCasanovo de novo peptide sequencing immunopeptidomics, metaproteomics and dark proteome
Predicted peptides for the immunopeptidomics, metaproteomics and dark proteome samples described in Yilmaz et al. [Yilmaz2023]. FTP directory contains mzTab outputs for Casanovo for these 3 datasets. [Yilmaz2023] M. Yilmaz*, W. Fondrie*, W. Bittremieux*, R. Nelson, V. Ananth, S. Oh, and W. Noble,"Se...
ORGANISM(S): Various Species In Metaproteomics Samples Homo Sapiens (ncbitaxon:9606) 
2024-02-01 | MSV000093980 | MassIVE
ProteomicsDe novo nine-species benchmark peptide identifications for Casanovo and other methods
Predicted peptides for the 9-species de novo sequencing benchmark MSV000090982 as described in Yilmaz et al. [Yilmaz2023]. FTP directory contains outputs of 5 de novo peptide sequencing methods on the 9-species benchmark: Casanovo, Casanovo_bm (benchmark), PointNovo, DeepNovo and Novor. [Yilmaz2023]...
ORGANISM(S): Bacillus Subtilis (ncbitaxon:1423) Candidatus Thiodiazotropha Endoloripes (ncbitaxon:1818881) Vigna Mungo (ncbitaxon:3915) Solanum Lycopersicum (ncbitaxon:4081) Saccharomyces Cerevisiae (ncbitaxon:4932) Homo Sapiens (ncbitaxon:9606) Mus Musculus (ncbitaxon:10090) Methanosarcina Mazei (ncbitaxon:2209) Apis Mellifera (ncbitaxon:7460) 
2024-02-01 | MSV000093979 | MassIVE
ProteomicsDe novo nine-species benchmark peptide identifications for Casanovo and other methods
Predicted peptides for the 9-species de novo sequencing benchmark MSV000090982 as described in Yilmaz et al. [Yilmaz2023]. FTP directory contains outputs of 5 de novo peptide sequencing methods on the 9-species benchmark: Casanovo, Casanovo_bm (benchmark), PointNovo, DeepNovo and Novor. Output files...
ORGANISM(S): Bacillus Subtilis (ncbitaxon:1423) Candidatus Thiodiazotropha Endoloripes (ncbitaxon:1818881) Vigna Mungo (ncbitaxon:3915) Solanum Lycopersicum (ncbitaxon:4081) Saccharomyces Cerevisiae (ncbitaxon:4932) Homo Sapiens (ncbitaxon:9606) Mus Musculus (ncbitaxon:10090) Methanosarcina Mazei (ncbitaxon:2209) Apis Mellifera (ncbitaxon:7460) 
2024-03-28 | MSV000094434 | MassIVE
UnknownMechanism of Cobalt-Catalyzed Heterodimerization of Acrylates and 1,3-Dienes. A Potential Role of Cationic Cobalt(I) Intermediates.
Not available
S-EPMC7250405 | biostudies-literature
ProteomicsCasanovo non-enzymatic fine-tuning set
To create a dataset of PSMs that does not exhibit tryptic bias, we selected PSMs with a uniform distribution of amino acids at the C-terminal peptide positions from two datasets: MassIVE-KB [Wang2018] and PROSPECT [Shouman2022]. The MassIVE-KB dataset contains 30 million PSMs and consists entirely o...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2024-02-05 | MSV000094014 | MassIVE
UnknownA quality improvement project to increase compliance with diabetes measures in an academic outpatient setting.
Not available
S-EPMC6651972 | biostudies-literature
TranscriptomicsTranscriptional profiles from Dickeya dadantii 3937 in various growth conditions
We have analysed the global gene expression of the plant pathogen Dickeya dadantii 3937 when grown in vitro under different growth and stress conditions. A multi-factorial design with 32 different experimental conditions was constructed, with two biological replicates for each condition. Cells were ...
ORGANISM(S): Dickeya dadantii 3937 
2015-04-16 | E-MTAB-541 | biostudies-arrayexpress
UnknownSLCO2B1 and SLCO1B3 may determine time to progression for patients receiving androgen deprivation therapy for prostate cancer.
Not available
S-EPMC3138634 | biostudies-literature
UnknownComparing In Vitro Virucidal Efficacy of Commercially Available Mouthwashes Against Native High-Risk Human Papillomavirus Types 16 and 18.
Not available
S-EPMC12029689 | biostudies-literature
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