Okada M M - OmicsDI

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Unknown (2997)
Transcriptomics (51)
Proteomics (32)
Metabolomics (6)
Genomics (3)
Models (1)

Organisms

Homo sapiens (34)
Mus musculus (20)
Oryza sativa (6)
Pseudomonas putida (5)
Rattus norvegicus (5)
Saccharomyces cerevisiae (4)
Pseudomonas putida KT2440 (4)
cellular organisms (3)
Arabidopsis thaliana (2)
Canis lupus familiaris (1)
Drosophila melanogaster (1)
Escherichia coli (1)

Repository

biostudies-arrayexpress (53)
pride (17)
jPOST (14)
MetaboLights (6)
BioModels (1)
EGA (1)
MassIVE (1)

Tissue

Cell lysate (4)
Cell culture (3)
Cell line cell (2)
Brain (1)
Epithelial cell (1)
HeLa cell (1)
Motor neuron (1)
Permanent cell line cell (1)
Testis (1)

Disease

Amyotrophic lateral sclerosis (1)
Glioblastoma (1)

Technology Type

Mass Spectrometry (17)
Affinity purification coupled with mass spectrometry proteomics (9)
Shotgun proteomics (8)
Mass spectrometry (6)
Gel-based experiment (4)
Bottom-up proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)
Data-independent acquisition (1)

Instrument Platform

Capillary electrophoresis MS - negative (3)
Capillary electrophoresis MS - positive (3)
Liquid Chromatography MS - positive - reverse phase (2)
10x Genomics (1)
Illumina NovaSeq 6000 (1)
NextSeq 500 (1)
Q Exactive (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2015 (12)
2013 (10)
2012 (9)
2023 (9)
2011 (8)
2024 (6)
2025 (5)
2014 (5)
2010 (5)
2022 (5)
2018 (4)
2019 (2)
2017 (2)
2021 (2)
2026 (2)
2016 (2)
2009 (1)
2008 (1)
2020 (1)

UNIPROT ID/AC

P01100 (1)
P27361 (1)
P28482 (1)
P28562 (1)
Q05923 (1)
Q13115 (1)
Q13202 (1)
Q16690 (1)
Q9Y6W6 (1)

CHEBI ID

CHEBI:16765 (5)
CHEBI:16811 (5)
CHEBI:16865 (5)
CHEBI:17822 (5)
CHEBI:22653 (5)
CHEBI:24266 (5)
CHEBI:26271 (5)
CHEBI:28044 (5)
CHEBI:132958 (4)
CHEBI:15356 (4)
CHEBI:15428 (4)
CHEBI:15676 (4)
CHEBI:15698 (4)
CHEBI:15714 (4)
CHEBI:15725 (4)
CHEBI:15741 (4)
CHEBI:15901 (4)
CHEBI:15940 (4)
CHEBI:16010 (4)
CHEBI:16119 (4)
CHEBI:16199 (4)
CHEBI:16335 (4)
CHEBI:16449 (4)
CHEBI:16610 (4)
CHEBI:16668 (4)
CHEBI:16958 (4)
CHEBI:17148 (4)
CHEBI:17376 (4)
CHEBI:17497 (4)
CHEBI:17521 (4)

Metabolite Name

(Methylthio)acetate (2)
1-Aminoethylphosphonate (2)
10-Hydroxydecanoate (2)
2',3'-cCMP (2)
2'-Deoxycytidine (2)
2,3-DPG (2,3-Disphospho-D-glycerate) (2)
2,3-Pyridinedicarboxylate (2)
2,4-Dihydroxypyrimidine-5-carboxylate (2)
2,5-Dihydroxybenzoate (2)
2-Amino-3-phosphonopropionate (2)
2-Aminoethylphosphonate (2)
2-Deoxyglucose 6-phosphate (2)
2-Deoxyribose 1-phosphate (2)
2-Furoate (2)
2-Hydroxy-4-methylpentanoate (2)
2-Hydroxybutyrate (2)
2-Hydroxyglutarate (2)
2-Hydroxyisobutyrate (2)
2-Hydroxyoctanoate (2)
2-Hydroxypentanoate (2)
2-Hydroxyphenylacetate (2)
2-Isopropylmalate (2)
2-Oxoadipate (2)
2-Oxobutyrate (2)
2-Oxoglutarate (2)
2-Oxoisopentanoate (2)
2-Oxooctanoate (2)
2-Quinolinecarboxylate (2)
2-Thiopheneacetate (2)
2PG (D-Glycerate 2-phosphate) (2)

IsPrivate

False (1)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (38)
Transcription profiling by tiling array (4)
ChIP-chip by tiling array (3)
ChIP-seq (2)
Animal - High-throughput sequencing (1)
Comparative genomic hybridization by array (1)
Other (1)
Methylation profiling by array (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of coding RNA (1)

Release Date

2022 (376)
2023 (351)
2025 (335)
2024 (322)
2021 (313)
2020 (225)
2019 (178)
2018 (134)
2015 (124)
2017 (124)
2016 (119)
2014 (92)
2013 (63)
2012 (63)
2026 (49)
2011 (45)
2010 (35)
2005 (16)
2009 (14)
2008 (14)
2007 (12)
2006 (12)
2004 (9)
2003 (5)
2002 (5)
2001 (5)
1998 (5)
2000 (3)
1999 (1)
1997 (1)

Lab affiliation

Biotechnology Research Center, The University of Tokyo, Tokyo, Japan. (2)
School of Agriculture, Meiji University, Japan (2)
Associate Professor, Department of Chemistry Associate Professor, Thomas C. Jenkins Department of Biophysics Associate Professor, Department of Biology (1)
Biomolecular characterization unit, Center for Sustainable Resource Science, RIKEN (1)
Biotechnology Research Center, The University of Tokyo (1)
Biotechnology Research Center, The University of Tokyo. (1)
Department of Biology, Technion – Israel Institute of Technology, Haifa, Israel (1)
Department of Neurology, Nagoya University Graduate School of Medicine (1)
Department of Physiology,Juntendo University Graduate School of Medicine (1)
Dept. of Molecular and Cellular Biology University of California - Davis (1)
Laboratory of Protein Metabolism, Tokyo Metropolitan Institute of Medical Science, Tokyo, 156-8506, Japan (1)
Osaka Univ. (1)
Regional Centre for Biotechnology, Faridabad, Haryana, India (1)
School of Life Sciences, Tokyo University of Pharmacy and Life Sciences, Japan (1)
Studying the Dynamics of Proteomes, Large-Scale Biology, CEA Grenoble (1)

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Essential Oils of Gardenia jasminoides J. Ellis and Gardenia jasminoides f. longicarpa Z.W. Xie & M. Okada Flowers: Chemical Characterization and Assessment of Anti-Inflammatory Effects in Alveolar Macrophage.

Not available

S-EPMC9145545 | biostudies-literature

M-Sec induced by HTLV-1 mediates an efficient viral transmission.

Not available

S-EPMC8659635 | biostudies-literature

Myb controls G(2)/M progression by inducing cyclin B expression in the Drosophila eye imaginal disc.

Not available

S-EPMC125351 | biostudies-literature

Establishment of bone marrow-derived M-CSF receptor-dependent self-renewing macrophages.

Not available

S-EPMC7378060 | biostudies-literature

The relationship between contact lens ultraviolet light transmittance and myopia progression: a large-scale retrospective cohort study.

Not available

S-EPMC11497595 | biostudies-literature

Single-molecule tracking of Nanog and Oct4 in living mouse embryonic stem cells uncovers a feedback mechanism of pluripotency maintenance

Not available

S-SCDT-10_15252-EMBJ_2022112305 | biostudies-other

Reclassification of Botryococcus braunii chemical races into separate species based on a comparative genomics analysis.

Not available

S-EPMC11286282 | biostudies-literature

Hepatic gene expression profile in persimmon peel extract administrated GK rat

Persimmon (Diospyros kaki L. f.) is a most popular fruit in Asian countries but its peels are totally wasted despite of containing a plenty of antioxidants such as carotenoids and polyphenols. We prepared a fat-soluble extract from a persimmon peel (PP) fraction and fed type 2 diabetic Goto-Kakizak...

ORGANISM(S): Rattus norvegicus

2011-03-17 | E-GEOD-21417 | biostudies-arrayexpress

A critical role for ABC transporters in persistent lung inflammation in the development of emphysema after smoke exposure.

Not available

S-EPMC6219826 | biostudies-literature

Expression profiling in primary embryonic fibroblasts deficient for the N-terminal truncation of Lats1

Lats1 and Lats2 are the mediators of the Hippo pathway that regulates tissue growth and proliferation. Lats1 and Lats2 kinases share 85% sequence identity in the kinase domain. However, their non-kinase regions at the N-terminus are distinct except for Lats conserved domain 1 (LCD1) and LCD2, sugges...

ORGANISM(S): Mus musculus

2012-12-17 | E-GEOD-37871 | biostudies-arrayexpress

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