Olsen M L ML - OmicsDI

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Unknown (163)
Proteomics (56)
Transcriptomics (14)
Metabolomics (5)
Genomics (1)

Organisms

Homo sapiens (33)
Mus musculus (9)
Arabidopsis thaliana (3)
Triticum aestivum (2)
Saccharomyces cerevisiae (2)
Porphyromonas gingivalis W83 (1)
Brassica rapa (1)
Porphyromonas gingivalis (1)
Bacillus subtilis (1)
Bacillus velezensis (1)
Bacteria (1)
Brachypodium distachyon (1)
Chlamydia trachomatis D/UW-3/CX (1)
Crocus sativus (1)
Danio rerio (1)
Equus sp. (1)
Escherichia coli (1)
Glycine max (1)
Herpesvirales (1)
Hordeum vulgare (1)
Human adenovirus 5 (1)
Jatropha curcas (1)
Leishmania (1)
Oryza sativa (1)
Phytophthora cinnamomi (1)
Plasmodium falciparum NF54 (1)
Poterioochromonas malhamensis (1)
Stephanorhinus (1)
Synechocystis sp. PCC 6803 (1)
Thermochaetoides thermophila DSM 1495 (1)

Repository

pride (54)
biostudies-arrayexpress (16)
MetaboLights (5)
PAXDB (1)

Tissue

Cell culture (15)
Epithelial cell (6)
Permanent cell line cell (6)
Leaf (3)
B cell (2)
Blood (2)
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HeLa cell (2)
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Lung (2)
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Blood cancer cell (1)
Blood cell (1)
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Cell suspension culture (1)
Cerebellum (1)
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Cervical gland (1)
Colon endothelium (1)
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Disease

Breast cancer (5)
Colon cancer (3)
Disease free (3)
Acute leukemia (1)
Acute myeloid leukemia (1)
Bacterial infectious disease (1)
Cervix carcinoma (1)
Chronic myeloid leukemia (1)
Influenza (1)
Leishmaniasis (1)
Limb ischemia (1)
Malignant neoplasm of ovary (1)
Mixed disorder as reaction to stress (1)
Non-Hodgkin lymphoma (1)
Non-small cell lung carcinoma (1)
Pancreatic cancer (1)
Plasmodium falciparum malaria (1)
Prostate adenocarcinoma (1)
Viral infectious disease (1)

Technology Type

Mass Spectrometry (54)
Shotgun proteomics (27)
Gel-based experiment (11)
Affinity purification coupled with mass spectrometry proteomics (9)
Bottom-up proteomics (9)
Data-independent acquisition (4)
Mass spectrometry (3)
Data-dependent acquisition (3)
SRM/MRM (3)
SWATH MS (3)
Mass spectrometry assay (2)
All-ion fragmentation (2)

Instrument Platform

Illumina HiSeq 2500 (1)
Illumina HiSeq 4000 (1)
5975C Series GC/MSD (Agilent) (1)
Direct infusion MS - negative (1)
Direct infusion MS - positive (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography Tandem MS (LC-MS/MS) (1)

Publication Date

2023 (10)
2019 (10)
2024 (7)
2011 (5)
2026 (5)
2021 (5)
2017 (5)
2008 (4)
2022 (4)
2025 (4)
2018 (4)
2015 (3)
2016 (3)
2014 (2)
2010 (2)
2020 (2)
2013 (1)

UNIPROT ID/AC

2A5D_YEAST (1)
2AAA_YEAST (1)
2ABA_YEAST (1)
3HAO_YEAST (1)
6P21_YEAST (1)
6PGD1_YEAST (1)
6PGD2_YEAST (1)
AAKG_YEAST (1)
AAP1_YEAST (1)
AAR2_YEAST (1)
AATC_YEAST (1)
AATM_YEAST (1)
AB140_YEAST (1)
ABF1_YEAST (1)
ABF2_YEAST (1)
ABP1_YEAST (1)
ACA2_YEAST (1)
ACAC_YEAST (1)
ACBP_YEAST (1)
ACE2_YEAST (1)
ACF4_YEAST (1)
ACH1_YEAST (1)
ACK1_YEAST (1)
ACL4_YEAST (1)
ACO1_YEAST (1)
ACON2_YEAST (1)
ACON_YEAST (1)
ACPM_YEAST (1)
ACS2_YEAST (1)
ACT_YEAST (1)

CHEBI ID

CHEBI:15940 (2)
CHEBI:16015 (2)
CHEBI:1230 (1)
CHEBI:132004 (1)
CHEBI:132007 (1)
CHEBI:132059 (1)
CHEBI:132541 (1)
CHEBI:132542 (1)
CHEBI:132543 (1)
CHEBI:132723 (1)
CHEBI:132724 (1)
CHEBI:133629 (1)
CHEBI:134448 (1)
CHEBI:134490 (1)
CHEBI:136225 (1)
CHEBI:136229 (1)
CHEBI:136234 (1)
CHEBI:136235 (1)
CHEBI:136236 (1)
CHEBI:136239 (1)
CHEBI:136240 (1)
CHEBI:136243 (1)
CHEBI:136245 (1)
CHEBI:136247 (1)
CHEBI:136248 (1)
CHEBI:136252 (1)
CHEBI:136256 (1)
CHEBI:136257 (1)
CHEBI:136258 (1)
CHEBI:136259 (1)

Metabolite Name

(Nω-L-arginino)succinic acid (1)
3-hydroxybutyric acid (1)
3-hydroxypentanoic acid (1)
3-methyl-2-oxovaleric acid (1)
4-methyl-2-oxopentanoic acid (1)
Adenosine diphosphate ribose (1)
CE(14:0) (1)
CE(14:1) (1)
CE(15:0) (1)
CE(15:1) (1)
CE(16:0) (1)
CE(16:1) (1)
CE(17:0) (1)
CE(17:1) (1)
CE(18:0) (1)
CE(18:1) (1)
CE(18:2) (1)
CE(18:3) (1)
CE(20:0) (1)
CE(20:1) (1)
CE(20:2) (1)
CE(20:3) (1)
CE(20:4) (1)
CE(20:5) (1)
CE(20:6) (1)
CE(22:0) (1)
CE(22:1) (1)
CE(22:2) (1)
CE(22:4) (1)
Cer(d18:1/14:0) (1)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)
N6 (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (9)
RNA-seq of coding RNA (3)
Transcription profiling by tiling array (1)
Comparative genomic hybridization by array (1)
ChIP-seq (1)
Proteomic profiling by array (1)

Release Date

2021 (18)
2015 (15)
2018 (15)
2024 (13)
2016 (12)
2023 (11)
2020 (11)
2017 (11)
2022 (10)
2013 (9)
2025 (9)
2019 (9)
2008 (8)
2011 (7)
2014 (6)
2010 (5)
2012 (4)
2009 (3)
2026 (2)
1999 (1)

Lab affiliation

Protein Analysis Facility, Faculty of Biology and Medicine, University of Lausanne, Switzerland (2)
1. Laboratorio de Enfermedades Parasitarias, Facultad de Ciencias Veterinarias, Universidad del Zulia, Maracaibo, Venezuela 2. Department of Biomedical Sciences, School of Medicine, University of Minnesota Duluth. 1035 University Drive, Duluth, MN, 55812 USA (1)
1: Evotec (München) GmbH, Am Klopferspitz 19a, 82151 Martinsried, Germany 2: Cell Signaling Group, Department of Molecular Biology, Max Planck Institute of Biochemistry, Am Klopferspitz 18, 82152 Martinsried, Germany (1)
AG Willmitzer, Max Planck Institute of Molecular Plants Physiology, Potsdam-Golm, Germany (1)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (1)
Analytics Core Facility Essen, Chemische Biologie, Zentrum für Medizinische Biotechnologie, Fakultät für Biologie, Universität Duisburg-Essen, Universitätsstr. 2, 45117 Essen, Germany (1)
Brunel University London (1)
CRUK Beatson Institute, Switchback Road, Glasgow G61 1BD, UK. (1)
Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology; Gene Regulation, Stem Cells and Cancer; Sdelci Lab; Barcelona, Spain (1)
Chemistry Department, Marx Group, University of Konstanz, Germany (1)
Computational and Experimental Biology Group, National Institute of Health Dr. Ricardo Jorge, Lisbon, Portugal (1)
Copenhagen University - Novo Nordisk Foundation Center for Protein Research (1)
Department of Autoimmunology and Biomarkers, Statens Serum Institut, Denmark (1)
Department of Bioprocess Engineering, Institute of Food Science and Biotechnology, University of Hohenheim, Fruwirthstr. 12, 70599 Stuttgart, Germany (1)
Department of Clinical and Toxicological Analysis, Federal University of Alfenas, Brazil (1)
Department of Immunobiology University of Lausanne Chemin des Boveresses 155 CH-1066 Epalinges, Switzerland (1)
Department of Immunobiology, University of Lausanne, Switzerland (1)
Department of Organismic Interactions, University of Tübingen (1)
Department of Pathology and Laboratory Medicine,University of Pennsylvania Perelman School of Medicine, Philadelphia, PA USA Division of Cancer Pathobiology,Children's Hospital of Philadelphia, Philadelphia, PA USA (1)
Department of Pediatric Oncology, Hematology, Immunology and Pulmonology University Medical Center for Children and Adolescents Im Neuenheimer Feld 430 D-69120 Heidelberg Germany ( lab head ) (1)
Department of Physiology, Anatomy and Genetics; University of Oxford; Sherrington Road; Oxford, OX1 3PT; United Kingdom (1)
Department of Systems Biology, City of Hope Comprehensive Cancer Center, CA, USA (1)
Dr. Andreas Bergthaler Principal Investigator CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences Lazarettgasse 14, AKH BT 25.3 1090 Vienna, Austria (1)
European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI) (1)
Faculty of Medicine, University of Ottawa (1)
Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland (1)
Globe Institute, University of Copenhagen, Øster Farimagsgade 5, 1353 Copenhagen, Denmark (1)
Group leader, Professor University of Copenhagen Faculty of Health and Medical Sciences Novo Nordisk Foundation Center for Protein Research Denmark (1)
Hans Merensky Chair in Avocado Research, Department of Biochemistry, Genetics and Microbiology, Faculty of Natural and Agricultural Sciences, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria 0028, South Africa (1)
Institute of Biochemistry and Biotechnology, Martin Luther University Halle-Wittenberg, Kurt-Mothes-Straße 3, 06120, Halle/Saale, Germany Institute of Chemical Biology, National Hellenic Research Foundation, Athens, 11635, Greece (1)

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Expression quantitative trait loci (eQTL) analysis of Brassica rapa under varying soil phosphorus (P) supplies

The aim of this study was to identify eQTL in Brassica rapa grown under altered soil phosphorus (P) supply, to understand better the genetic architecture of P-use efficiency (PUE) in plants. Recombinant inbred lines (RILs) of the BraIRRI mapping population were grown at adequate and growth-limiting ...

ORGANISM(S): Brassica rapa

2011-06-29 | E-GEOD-27052 | biostudies-arrayexpress

Diel metabolomics analysis of a hot spring chlorophototrophic microbial mat leads to new hypotheses of community member metabolisms

Dynamic environmental factors such as light, nutrients, salt, and temperature continuously affect chlorophototrophic microbial mats, requiring adaptive and acclimative responses to stabilize composition and function. Quantitative metabolomics analysis can provide insights into metabolite dynamics fo...

2024-02-23 | MTBLS187 | MetaboLights

Protease-stable DARPins as promising oral therapeutics.

Not available

S-EPMC8861517 | biostudies-literature

Multi-omics characterization of acquired Olaparib resistance in BRCA1 and BRCA2 mutant breast cancer cell lines

Poly (ADP-ribose) polymerase inhibitors (PARPi) are widely used as targeted therapies against breast cancers with BRCA mutations. However, the development of resistance to PARPi poses a significant challenge for long-term efficacy of these therapies, warranting further understanding of mechanisms of...

2026-05-11 | MTBLS12109 | MetaboLights

Canary Ovarian Cell Line Gene Expression

All cell lines were cultured according to the specifications outlined by ATCC. Cell lines were grown to 80% confluence, then serum-deprived in 0.5% FBS for 24 hours before harvesting. Cells were washed twice with Hank's Balanced Salt Solution (Invitrogen, Carlsbad, California) and drained. 1 mL of S...

ORGANISM(S): Homo sapiens

2011-02-12 | E-GEOD-27225 | biostudies-arrayexpress

Strand-specific transcriptome profiles of the oral pathogen Porphyromonas gingivalis using genomic tiling microarray and RNA sequencing

High-density tiling microarray and RNA sequencing technologies were used to analyze the transcriptome of Porphyromonas gingivalis. The compiled P. gingivalis transcriptome were based on total RNA samples isolated from three different laboratory culturing conditions and the strand-specific transcript...

ORGANISM(S): Porphyromonas gingivalis W83

2011-10-01 | E-GEOD-30452 | biostudies-arrayexpress

Ovarian Tumor Tissue Expression Study

Ovarian tumor tissues were obtained from patients with informed consent, which was approved by the Institutional Review Board of the Swedish Hospital in Seattle. Tissue acquisition, processing and storage were conducted by the Pacific Ovarian Cancer Research Consortium (POCRC) at the Fred Hutchinso...

ORGANISM(S): Homo sapiens

2011-02-12 | E-GEOD-27223 | biostudies-arrayexpress

Software tool for internal standard based normalization of lipids, and effect of data-processing strategies on resulting values

BACKGROUND: Lipidomics, the comprehensive measurement of lipids within a biological system or substrate, is an emerging field with significant potential for improving clinical diagnosis and our understanding of health and disease. While lipids diverse biological roles contribute ...

2022-05-17 | MTBLS710 | MetaboLights

Shotgun lipidomics of HeLa whole-cell lysates and lysosomes following LLOMe treatment

Perturbations in lysosome integrity are tightly linked to neurological disorders and ageing, but the underlying pathogenic mechanisms are incompletely understood. Using an unbiased proteomic approach, we here identified the bridge-like lipid transport protein VPS13C/PARK23 as a key component of a...

2026-07-03 | MTBLS14737 | MetaboLights

Transcription profiling of human skin during elicitation of allergic contact dermatitis - time series

Genes involved in the inflammatory response resulting in allergic contact dermatitis (ACD) are only partly known. In this study, we introduce the use of high density oligonucleotide arrays for gene expression profiling in human skin during the elicitation of ACD. Skin biopsies from normal and nickel...

ORGANISM(S): Homo sapiens

2008-06-14 | E-GEOD-6281 | biostudies-arrayexpress

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