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TranscriptomicsRNA-Seq and BS-Seq of Sorghum bicolor tissues
This study utilized next generation sequencing technology (RNA-Seq and BS-Seq) to examine the transcriptome and methylome of various tissues within sorghum plants with the ultimate goal of improving the Sorghum bicolor annotation We examined the mRNA of various Sorghum bicolor (BTx623) tissues (flow...
ORGANISM(S): Sorghum bicolor 
2014-08-29 | E-GEOD-50464 | biostudies-arrayexpress
TranscriptomicsRNA-Seq and BS-Seq of Sorghum bicolor tissues
This experiment contains the subset of data corresponding to sorghum RNA-Seq data from experiment E-GEOD-50464 (http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50464/), which goal is to examine the transcriptome of various Sorghum bicolor (BTx623) tissues: flowers, vegetative and floral meriste...
ORGANISM(S): Sorghum bicolor 
2014-08-29 | E-MTAB-3839 | biostudies-arrayexpress
TranscriptomicsRNA-seq data for a comparative transcriptome study of Sorghum bicolor BTX623
We selected 11 tissues from sorghum reference genome line BTX623 for comparative study between Maize and sorghum. These 11 tissues were selected at different development stages at Cold Spring Harbor Laboratory upland farm, RNA were extracted, library was made and sequenced on HiSeq2500 PE125 platfo...
ORGANISM(S): Sorghum bicolor 
2018-07-31 | E-MTAB-5956 | biostudies-arrayexpress
MetabolomicsGlycolysis/gluconeogenesis specialization in microbes is driven by biochemical constraints of flux sensing
Central carbon metabolism is highly conserved across microbial species, but can catalyze very different pathways depending on the organism and their ecological niche. Here, we study the dynamic reorganization of central metabolism after switches between the two major opposing pathway configurations ...
2022-01-11 | MTBLS3887 | MetaboLights
UnknownInherited mutations in 17 breast cancer susceptibility genes among a large triple-negative breast cancer cohort unselected for family history of breast cancer.
Not available
S-EPMC4302212 | biostudies-literature
TranscriptomicsTranscription profiling of cerebellum from transgenic mice with nuclear and extranuclear polyQ to investigate the role of polyQ in Huntingtons disease
To dissect the impact of nuclear and extranuclear mutant htt on the initiation and progression of disease, we generated a series of transgenic mouse lines in which nuclear localization (NLS) or nuclear export sequences (NES) have been placed N-terminal to the htt exon 1 protein carrying 144 glutamin...
ORGANISM(S): Mus musculus 
2007-07-03 | E-GEOD-3248 | biostudies-arrayexpress
UnknownImmunotherapeutic Targeting of Mesothelin Positive Pediatric AML Using Bispecific T Cell Engaging Antibodies.
Not available
S-EPMC8657033 | biostudies-literature
TranscriptomicsTranscription profiling of rat Htt14A2.5 (PC12) cells expressing truncated Htt exon 1-EGFP fusion protein
Htt14A2.5 is a clonal rat pheochromocytoma (PC12) cell line, that expresses a truncated form of expanded repeat Htt exon 1 protein fused at the C-terminus to enhanced green fluorescent protein (EGFP). For total RNA preparation, ~3 x 105 cells were plated on 150 mm plates and the following day eithe...
ORGANISM(S): Rattus norvegicus 
2007-10-08 | E-GEOD-2602 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of human growing breast cancer cell lines
Gene expression analysis on growing breast cancer cell lines. Experiment Overall Design: see Bild, A. et.al.
ORGANISM(S): Homo sapiens 
2008-06-12 | E-GEOD-3156 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of human mammary epithelial cells expressing oncogenes (or GFP control)
Signatures of Oncogenic Pathway Deregulation in Human Cancers; The ability to define cancer subtypes, recurrence of disease, and response to specific therapies using DNA microarray-based gene expression signatures has been demonstrated in multiple studies. Such data is also of substantial importance...
ORGANISM(S): Homo sapiens 
2008-06-12 | E-GEOD-3151 | biostudies-arrayexpress
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