Oncorhynchus tshawytscha - OmicsDI

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Organisms

Oncorhynchus tshawytscha (22)
fish gut metagenome (3)
Flavobacterium tructae (2)
Oncorhynchus (1)
Oncorhynchus masou ishikawae (1)

Repository

biostudies-arrayexpress (1298)
ENA (46)
geo (44)
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pride (3)
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iProX (1)
PanoramaPublic (1)
PAXDB (1)

Tissue

Coelomic fluid (1)
Liver (1)
Muscle (1)
Seminal plasma (1)

Disease

Normal (5)
Breast adenocarcinoma (2)
Adenocarcinoma (2)
Breast cancer (2)
Monoclonal gammopathy of undetermined significance (MGUS) (1)
Hepatomegaly (1)
T. circumcincta infection (1)
Infected with IBDV strain F52/70 (1)
Whitehart (1)
Infected (1)
Chronic granulomatous disease (1)
Pancreatic cancer (1)
Mock infected (1)
IRAK-4 Q293X mutation (1)
E. lata infected plant without symptoms (1)
Normal thyroid tissue (1)
Resistant (1)
Exposed_Seronegative (1)
Mastitis (1)
Cancer (1)
Chicken Anaemia Virus infected (1)
S enteritidis (1)
Hepatocellular carcinoma (1)
Carcinoma (1)
Breast carcinoma (1)

Technology Type

Mass spectrometry (4)
Mass Spectrometry (3)
Shotgun proteomics (2)
Mass spectrometry assay (1)
HDMSE (1)

Instrument Platform

Illumina NovaSeq 6000 (81)
Illumina HiSeq 2500 (40)
NextSeq 500 (32)
Illumina HiSeq 4000 (25)
Illumina NovaSeq X (12)
NextSeq 2000 (11)
NextSeq 550 (9)
Illumina HiSeq 2000 (7)
ScanArray 5000 [PerkinElmer] (6)
Axon- GenePix4000B (6)
Scanning hardware (6)
GenePix 4000B [Axon Instruments] (5)
DNBSEQ-G400 (5)
GenePix Professional 4200A [Axon Instruments] (4)
NA (3)
Ion Torrent S5 XL (3)
PromethION (2)
Axon GenePix4000B (2)
ProScanArray Microarray Scanner [PerkinElmer] (2)
ScanArray 4000 [PerkinElmer] (2)
ScanArray [PerkinElmer] (2)
Other (2)
GenePix Personal 4100A [Axon Instruments] (2)
418 [Affymetrix] (2)
Illumina HiSeq 1000 (2)
Illumina HiSeq 3000 (2)
Maxwell RSC instrument (1)
Maxwell RSC Instrument (1)
N/C (1)
Poly-T oligo-attached magnetic beads (1)

Publication Date

2010 (281)
2011 (136)
2012 (135)
2013 (131)
2009 (82)
2014 (76)
2008 (69)
2015 (48)
2025 (47)
2007 (46)
2023 (38)
2016 (38)
2026 (36)
2022 (32)
2024 (29)
2021 (25)
2006 (25)
2018 (19)
2005 (18)
2019 (15)
2020 (14)
2004 (11)
2017 (8)
2003 (1)

UNIPROT ID/AC

8030.ENSSSAP00000000096 (1)
8030.ENSSSAP00000000573 (1)
8030.ENSSSAP00000001022 (1)
8030.ENSSSAP00000001240 (1)
8030.ENSSSAP00000001597 (1)
8030.ENSSSAP00000001915 (1)
8030.ENSSSAP00000002059 (1)
8030.ENSSSAP00000002148 (1)
8030.ENSSSAP00000002253 (1)
8030.ENSSSAP00000002671 (1)
8030.ENSSSAP00000002680 (1)
8030.ENSSSAP00000002684 (1)
8030.ENSSSAP00000002690 (1)
8030.ENSSSAP00000002813 (1)
8030.ENSSSAP00000003619 (1)
8030.ENSSSAP00000004421 (1)
8030.ENSSSAP00000004518 (1)
8030.ENSSSAP00000004639 (1)
8030.ENSSSAP00000004862 (1)
8030.ENSSSAP00000004890 (1)
8030.ENSSSAP00000005034 (1)
8030.ENSSSAP00000005299 (1)
8030.ENSSSAP00000005382 (1)
8030.ENSSSAP00000005521 (1)
8030.ENSSSAP00000005671 (1)
8030.ENSSSAP00000006110 (1)
8030.ENSSSAP00000006522 (1)
8030.ENSSSAP00000006671 (1)
8030.ENSSSAP00000006691 (1)
8030.ENSSSAP00000006723 (1)

CHEBI ID

CHEBI:143745 (2)
CHEBI:195271 (2)
CHEBI:35038 (2)
CHEBI:34687 (2)
CHEBI:73858 (2)
CHEBI:16359 (2)
CHEBI:75342 (2)
CHEBI:27997 (2)
CHEBI:28865 (2)
CHEBI:64563 (2)
CHEBI:195269 (1)
CHEBI:75567 (1)
CHEBI:195270 (1)
CHEBI:181094 (1)
CHEBI:195272 (1)
CHEBI:191103 (1)
CHEBI:191092 (1)
CHEBI:181126 (1)
CHEBI:195264 (1)
CHEBI:25640 (1)
CHEBI:190340 (1)
CHEBI:63555 (1)
CHEBI:195263 (1)
CHEBI:182784 (1)
CHEBI:182695 (1)
CHEBI:166468 (1)
CHEBI:190338 (1)
CHEBI:143757 (1)
CHEBI:173703 (1)
CHEBI:195265 (1)

Metabolite Name

Dibutyl phthalate (DBP) (2)
Lyso-PC(16:0) (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
Tris(2-butoxyethyl) phosphate (2)
Taurocholic acid (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
Monoolein (2)
Elaidic acid (2)
Cholic acid (2)
Lyso PC (22:6) (1)
Methyl (3R,4R,5R)-5-[(2R,3R,4S,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(E)-3-phenylprop-2-enoyl]oxyoxan-2-yl]oxy-3,4-dihydroxycyclohexene-1-carboxylate (1)
Propanoic acid, 3,3'-thiobis-, didodecyl ester (1)
2-((R)-4-((3R,5S,7S,8R,9S,10S,13R,14S,17R)-3,7-dihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanamido)ethane-1-sulfonic acid (1)
LU052302 Acetyl tributyl citrate|tributyl 2-acetyloxypropane-1,2,3-tricarboxylate (1)
1-Hexadecanoyl-sn-glycerol (1)
9-Octadecenamide, (Z)- (1)
Ethanol, 2-(2-butoxyethoxy)- (1)
Alpha-TOCHOPHERYL ACETATE (1)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (1)
NCGC00186665-03!2,3-dihydroxypropyl hexadecanoate (1)
[(1S,6S,7R,10R,15S,16R,18S,19R,20R)-6-(3-Furyl)-8,9,18,19,20-pentahydroxy-3-(1-hydroxy-2-methylpropylidene)-7,12,15,17-tetramethyl-4-oxo-5,11,13,21-tetraoxaheptacyclo[10.8.1.114,17.01,10.02,7.010,15.014,19]docos-16-yl]acetic acid (1)
Cyclohexasiloxane, dodecamethyl- (1)
Cyclopentasiloxane, decamethyl- (1)
NCGC00347651-02_C20H26O3_1-Phenanthrenecarboxylic acid, 1,2,3,4,4a,9,10,10a-octahydro-1,4a-dimethyl-7-(1-methylethyl)-9-oxo- (1)
Triphenyl phosphate (TPP)|Triphenyl phosphate|Triphenoxyphosphine oxide (1)
Glycohyodeoxycholic acid|SCHEMBL1654508|2-[4-(3,6-dihydroxy-10,13-dimethyl-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoylamino]acetic acid (1)
1-(9Z-Octadecenoyl)-sn-glycero-3-phosphocholine (1)
Cyclotetrasiloxane, octamethyl- (1)
2-((4R)-4-((3R,5S,7R,9S,10S,12S,13R,14S,17R)-3,7,12-trihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanamido)ethane-1-sulfonic acid (1)
Lauramidopropyl betaine|3-(Dodecanoylamino)propyl(carboxymethyl)dimethylammonium|carboxymethyl-[3-(dodecanoylamino)propyl]-dimethylazanium (1)

First Public Date

2023 (6)
2020 (5)
2013 (5)
2026 (4)
2019 (4)
2018 (4)
2015 (4)
2025 (3)
2021 (3)
2017 (3)
2014 (3)
2024 (1)
2022 (1)

Study type

Transcription profiling by array (754)
RNA-seq of coding RNA (183)
ChIP-chip by tiling array (73)
Unknown experiment type (57)
Comparative genomic hybridization by array (57)
ChIP-seq (43)
ChIP-chip by array (32)
RNA-seq of coding RNA from single cells (17)
RNA-seq of total RNA (15)
Other (12)
Animal - High-throughput sequencing (6)
Cell line - High-throughput sequencing (6)
Transcription profiling by tiling array (4)
Methylation profiling by array (3)
Proteomic profiling by array (3)
Methylation profiling by high throughput sequencing (3)
Human - High-throughput sequencing (2)
MicroRNA profiling by array (2)
Transcription profiling by SAGE (1)
Cell line - Two-color microarray (1)
Animal - Single-cell sequencing (1)
Human - Single-cell sequencing (1)
High-throughput sequencing (1)
ATAC-seq (1)
DNA-seq (1)
RNA-seq of non coding RNA (1)

Release Date

2010 (274)
2011 (137)
2012 (130)
2013 (129)
2014 (86)
2008 (70)
2009 (69)
2025 (57)
2015 (53)
2023 (45)
2016 (45)
2021 (42)
2007 (42)
2022 (41)
2024 (40)
2026 (36)
2020 (33)
2018 (29)
2006 (24)
2019 (23)
2017 (20)
2005 (19)
2004 (12)
2003 (1)

Lab affiliation

Center for Reproductive Evolution, Syracuse University (1)
Chemistry and Biochemistry, University of Windsor, Canada (1)
Proteomics facility, Central Science Laboratory, University of Tasmania (1)

Tags

xref:PubMed:23246653 (1)
xref:PubMed:37634278 (1)

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Oncorhynchus tshawytscha

Oncorhynchus tshawytscha microbiome raw sequence reads

PRJNA984295 | ENA

Oncorhynchus tshawytscha

Oncorhynchus tshawytscha Restriction site associated DNA

PRJNA232256 | ENA

Oncorhynchus tshawytscha

Oncorhynchus tshawytscha Raw sequence reads

PRJNA427710 | ENA

Oncorhynchus tshawytscha

Oncorhynchus tshawytscha Genome sequencing and assembly

PRJNA416144 | ENA

Oncorhynchus tshawytscha

Oncorhynchus tshawytscha overview

PRJNA108701 | ENA

Oncorhynchus tshawytscha

Oncorhynchus tshawytscha Genome sequencing

PRJNA263946 | ENA

Oncorhynchus tshawytscha

Long Serial Analysis of Gene Expression (LongSAGE) of Chinook salmon (Oncorhynchus tshawytscha) brain tissue.

PRJNA97805 | ENA

Oncorhynchus tshawytscha

Oncorhynchus tshawytscha Raw sequence reads

PRJNA437990 | ENA

Long Serial Analysis of Gene Expression (LongSAGE) of Chinook salmon (Oncorhynchus tshawytscha) brain tissue.

Chinook salmon (Oncorhynchus tshawytscha) display the greatest variability of return times to freshwater of all Pacific salmon. Populations return to freshwater for spawning at many different times of year, resulting in segregated populations that may use differing molecular pathways for these large...

ORGANISM(S): Oncorhynchus tshawytscha

2007-10-09 | E-GEOD-6009 | biostudies-arrayexpress

Oncorhynchus tshawytscha

Oncorhynchus tshawytscha raw RADtag sequence reads

PRJNA284766 | ENA

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