Ophthalmology - OmicsDI

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Unknown (41884)
Genomics (722)
Proteomics (159)
Transcriptomics (12)
Genomic (9)
Metabolomics (6)
Models (1)
Clinical (1)
Other (1)

Organisms

Chlamydomonas reinhardtii (128)
Pseudomonas canadensis (128)
Marchantia polymorpha subsp. ruderalis (128)
Methylocystis sp. (128)
Porites pukoensis (128)
Bothrops insularis (128)
Bothrops jararaca (128)
Bothrops jararacussu (128)
Bothrops cotiara (128)
Streptomyces coelicolor (128)
Pseudomonas taiwanensis (128)
Burkholderia ubonensis MSMB22 (128)
Pseudomonas aeruginosa PA103 (128)
Artibeus jamaicensis (128)
Morchella importuna (128)
Clostridium autoethanogenum (128)
Microbacterium ginsengisoli (128)
Streptomyces sp. A494 Ydz-AH (128)
Shewanella oneidensis MR-1 (128)
Leucocoprinus gongylophorus (128)
Bothrops brazili (128)
Ixodes scapularis (128)
Bothrops leucurus (128)
Ciona savignyi (128)
Haemophilus influenzae biotype aegyptius (128)
Bothrops moojeni (128)
Homo sapiens (13)
Mus musculus (9)
Macaca mulatta (2)
Rattus norvegicus (2)

Organisms

Mus musculus (308)
Homo sapiens (245)
Rattus norvegicus (29)
Danio rerio (15)
Oryctolagus cuniculus (9)
unidentified (9)
Arvicanthis niloticus (4)
Xenopus laevis (4)
human eye metagenome (4)
Macaca mulatta (3)
synthetic construct (2)
Serratia marcescens (2)
Drosophila melanogaster (2)
Capra hircus (2)
Gallus gallus (2)
Canis lupus familiaris (2)
Enterococcus phage phi EF7H (1)
Callithrix jacchus (1)
Petromyzon marinus (1)
Cavia porcellus (1)
Equus caballus (1)
human metagenome (1)
Sus scrofa (1)
Lactuca sativa (1)
Felis catus (1)

Repository

ENA (720)
pride (128)
MassIVE (20)
iProX (11)
dbGaP (9)
geo (7)
MetaboLights (6)
biostudies-arrayexpress (5)
EGA (2)
BioModels (1)
GPMDB (1)

Tissue

Retina (31)
Cell culture (14)
Vitreous humor (10)
Optic nerve (8)
Brain (8)
Eye (7)
Retinal cell (5)
Lens (4)
Tear (4)
Retinal pigment epithelial cell (4)
Blood plasma (4)
Epithelial cell (4)
Anterior chamber of the eye (3)
Choroid (3)
Cornea (3)
Microglial cell (3)
Iris (2)
Endothelial cell (2)
Retinal pigment epithelium cell (2)
Melanocyte (2)
Embryonic stem cell (2)
Oligodendrocyte precursor cell (2)
Primary cell (2)
Blood (2)
EBV-LCL cell (1)
Optic nerve development (1)
Mueller cell (1)
Layer of retina (1)
Stem cell differentiation (1)
Eye trabecular meshwork (1)

Disease

Disease free (7)
Age related macular degeneration (6)
Myopia (5)
Glaucoma (4)
Retinal degeneration (4)
Proliferative diabetic retinopathy (3)
Oculocutaneous albinism type III (2)
Open-angle glaucoma (2)
Uveal melanoma (2)
Uveitis (2)
Proliferative vitreoretinopathy (2)
Macular holes (2)
Multiple sclerosis (2)
Wounds and Injuries (2)
Melanoma (1)
Not Available (1)
Autoimmune uveitis (1)
Autoimmune disease of eyes (1)
Ocular hypertension (1)
Pigment dispersion syndrome (1)
Epiretinal membrane (1)
Birdshot chorioretinopathy (1)
Intermediate uveitis (1)
Lacrimal duct obstruction (1)
Cataract (1)
Exfoliation syndrome (1)
Retinal detachment (1)
Retinitis pigmentosa (1)
Prostate adenocarcinoma (1)
Primary open angle glaucoma (1)

Technology Type

Mass Spectrometry (128)
Shotgun proteomics (63)
Bottom-up proteomics (28)
Gel-based experiment (12)
Data-dependent acquisition (11)
Affinity purification coupled with mass spectrometry proteomics (10)
Data-independent acquisition (8)
SWATH MS (7)
Mass spectrometry assay (4)
Top-down proteomics (3)
Mass spectrometry (2)
MSE (2)
SRM/MRM (2)

Instrument Platform

GC MS (4)
LTQ Orbitrap Velos (4)
GC-MS (3)
LTQ Orbitrap Elite (3)
Q Exactive (3)
Liquid Chromatography MS - negative - reverse-phase (2)
Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - positive - hilic (2)
Instrument (1)
Agilent 7890A GC with 5975C inert XL MSD (1)
LTQ Orbitrap XL (1)
LTQ Orbitrap (1)
Liquid Chromatography MS - positive - reversed-phase-chromatography (1)
Liquid Chromatography MS - negative - reversed-phase-chromatography (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2022 (23)
2026 (22)
2025 (22)
2024 (19)
2023 (18)
2016 (13)
2021 (13)
2018 (11)
2017 (11)
2019 (6)
2015 (5)
2020 (4)
2013 (1)
2008 (1)
2007 (1)
2004 (1)
2003 (1)
2014 (1)

CHEBI ID

CHEBI:18183 (1)
CHEBI:20392 (1)
CHEBI:506227 (1)
CHEBI:17310 (1)
CHEBI:30838 (1)
CHEBI:30769 (1)
CHEBI:15354 (1)
CHEBI:17750 (1)
CHEBI:73024 (1)
CHEBI:28300 (1)
CHEBI:16811 (1)
CHEBI:16708 (1)
CHEBI:18237 (1)
CHEBI:16347 (1)

Metabolite Name

Pyroglutamic acid (3)
2'-O-Methyluridine (2)
Glutamate (2)
Phenol (2)
Taurocholic acid (2)
Adrenic acid (2)
Glycocholic acid (2)
Laprafylline (2)
Oleic acid (2)
Adenine (2)
2-Carboxy-arabinitol (1)
1-(4-Hydroxy-3-methoxyphenyl)-7-phenyl-1-hepten-3-one (1)
10-Hydroperoxy-12-[6-[pent-2-en-1-yl]-2,3-dioxabicyclo[2.2.1]heptan-5-yl]dodeca-4,7,11-trienoylcarnitine (1)
Methacrylamide (1)
Lexipafant (1)
4-methyl-proline (1)
3beta-hydroxycholest-5-en-7-one-26-oate (1)
Ethyl 3-hydroxybutyrate glucoside (1)
2-(3,4-Dihydroxy-5-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}phenyl)-5,7-dihydroxy-3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4H-chromen-4-one (1)
Arecoline Hydrobromide (1)
8-(4-hydroxy-3-methoxyphenyl)-6,7-bis(hydroxymethyl)-3-methoxy-5,6,7,8-tetrahydronaphthalen-2-ol (1)
[4-(1,2-Dihydroxyethyl)-2-methoxyphenyl]oxidanesulfonic acid (1)
5-(1-Hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl)-3-methylpenta-2,4-dienoic acid (1)
Okanin-4'-O-glucoside (1)
Isosakuranetin-7-neohesperidoside (1)
5-Nonadecylresorcinol (1)
3-[6-[(E)-4,6-dimethyloct-2-en-2-yl]-5-methyloxan-2-yl]-4-hydroxy-5-(4-hydroxyphenyl)-1-methylpyridin-2-one (1)
1,2-Dihydroxyheptadec-16-en-4-yl acetate (1)
2-Butynedioic acid (1)
Tert-Butyl carbamate (1)

First Public Date

2014 (101)
2025 (90)
2022 (82)
2026 (74)
2023 (73)
2021 (73)
2024 (60)
2020 (49)
2019 (40)
2017 (25)
2015 (17)
2018 (15)
2013 (11)
2016 (10)

Modelling Approach

Ordinary differential equation model (1)

Study status

Recruiting (1)

Lab affiliation

University of Miami Bascom Palmer Eye Institute (5)
Center for Translational Vision Research, Department of Ophthalmology, Gavin Herbert Eye Institute, University of California, Irvine, Irvine, CA, 92697, USA; Department of Physiology and Biophysics, Department of Chemistry, Department of Molecular Biology and Biochemistry; University of California, Irvine, Irvine, CA, 92697, USA (3)
Department of Experimental and Translational Ophthalmology, University Medical Center, Johannes Gutenberg University, Mainz, Germany (3)
Department of Ophthalmology, Beijing Key Laboratory of Restoration of Damaged Ocular Nerve, Peking University Third Hospital, Beijing, China (2)
(1) German Center for Neurodegenerative Diseases (DZNE), 72076 Tübingen, Germany (2) University of Tübingen, Center for Ophthalmology, Institute for Ophthalmic Research, 72074 Tübingen, Germany (2)
Department of Ophthalmology, LMU University Hospital, LMU Munich, Munich, Germany (2)
Pediatric, Developmental & Genetic Ophthalmology Section AND Ophthalmis Clinical Genetics Section, Ophthalmic Genetics and Visual Function Branch, National Eye Institute Intramural Research Program, NIH, US Government (2)
State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center, Sun Yat-sen University, Guangzhou, China (2)
Foundation of Ophthalmology Investigation (1)
1Brunason Center for Translational Vision Research, Department of Ophthalmology and Visual Sciences, Gavin Herbert Eye Institute, University of California, Irvine, Irvine, CA, 92697, USA; 2Department of Physiology and Biophysics, University of California, Irvine, Irvine, CA, 92697, USA; 3Department of Chemistry, University of California, Irvine, Irvine, CA, 92697, USA; Department of Molecular Biology and Biochemistry, University of California, Irvine, Irvine, CA, 92697, USA (1)
1Department of Ophthalmology, Shanghai General Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China, (1)
Department of Ophthalmology & Visual Sciences Washington University School of Medicine 660 S. Euclid Ave, Box 8096 St. Louis, MO 63117 USA (1)
Bascom Palmer Eye Institute, Department of Ophthalmology, Miller School of Medicine at University of Miami, Miami, FL 33136, USA +1 (305) 4824103 (1)
Department of Ophthalmology, University Medical Center Utrecht, University of Utrecht, Utrecht, Netherlands. Center for Translational Immunology, University Medical Center Utrecht, University of Utrecht, Utrecht, Netherlands. (1)
Department of Ophthalmology and Visual Science, University of Chicago Medical Center, Chicago, IL. (1)
University of Pittsburgh School of Medicine, Ophthalmology department (1)
Ophthalmology and Visual Sciences Albert Einstein College of Medicine Bronx, NY 10461, USA (1)
Department of Ophthalmology and Visual Sciences University of Maryland at Baltimore School of Medicine (1)
Experimental Ophthalmology Ophthalmology University Medical Center Mainz Germany (1)
1) German Center for Neurodegenerative Diseases (DZNE), 72076 Tübingen, Germany (2) University of Tübingen, Center for Ophthalmology, Institute for Ophthalmic Research, 72074 Tübingen, Germany (1)
Core Facility Metabolomics and Proteomics, Helmholtz Center Munich, German Research Center for Environmental Health, Munich, Germany (1)
Department of ophthalmology, National Taiwan University Hospital, Hsinchu Branch (1)
Tianjin Medical University Eye Hospital, Tianjin Medical University Ophthalmology Research Institute，Tianjin,300384 (1)
Charite Ophthalmology / MDC Cellular Neuroscience (1)
SeRLab (Severance Eye Research Laboratory), Department of Ophthalmology, Yonsei University College of Medicine, Yongin Severance Hospital (1)
Corneal Stem Cell and Tissue Engineering Laboratory, Department of Ophthalmology and Visual Science, University of Illinois at Chicago (1)
Department of Ophthalmology, Laboratory of Molecular Ophthalmology and Tianjin Key Laboratory of Ocular Trauma, Ministry of Education International Joint Laboratory of Ocular Diseases, Tianjin Medical University General Hospital; Tianjin 300052, China. (1)
1Department of Ophthalmology, Stem Cell Ocular Regenerative Medicine Center, Wilmer Eye Institute, The Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA. (1)
Experimental Ophthalmology, University Medical Center Mainz (1)
Department of Ophthalmology, Yongin Severance Hospital, Yonsei University College of Medicine, Republic of Korea (1)

Keyword

Uveal Melanoma (1)
Protein Kinase C (1)
Ophthalmology (1)
Ocular Oncology (1)
Darovasertib (1)
IDE196 (1)
Ocular Melanoma (1)
Crizotinib (1)

IsPrivate

False (1)

Classification

bacteria (2)
viruses (1)

Modification

57.0215 (1)
15.9949 (1)
4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (5)
Interventional (1)

Release Date

2022 (4997)
2025 (4762)
2023 (4519)
2021 (4390)
2024 (4133)
2020 (3518)
2019 (2391)
2018 (2154)
2017 (1972)
2016 (1683)
2015 (1521)
2014 (1254)
2013 (832)
2026 (728)
2012 (683)
2011 (595)
2010 (473)
2009 (376)
2008 (251)
2007 (164)
2006 (118)
2005 (84)
2004 (65)
2003 (64)
2002 (58)
2001 (32)
2000 (26)
1999 (26)
1998 (9)
1997 (7)

Location

Australia (1)
Canada (1)
United States (1)

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