Oris M M - OmicsDI

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Transcriptomics (112)
Unknown (60)
Proteomics (23)
Genomics (22)
Metabolomics (8)
Genomic (1)

Organisms

Homo sapiens (80)
Mus musculus (18)
Drosophila melanogaster (4)
Oncorhynchus nerka (3)
Arabidopsis thaliana (3)
Aggregatibacter actinomycetemcomitans (3)
Candida albicans (3)
Streptococcus mutans UA159 (2)
Oncorhynchus mykiss (2)
Caenorhabditis elegans (2)
cellular organisms (2)
Fusarium sinicum (2)
Leishmania major strain Friedlin (1)
Trametes versicolor (1)
Streptococcus gordonii str. Challis (1)
Porphyromonas gingivalis W83 (1)
human oral metagenome (1)
Pimephales promelas (1)
Ciona robusta (1)
Macaca mulatta (1)
Fundulus heteroclitus (1)
Gasterosteus aculeatus (1)
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Glycine max (1)
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Haplochromis sauvagei (1)

Repository

biostudies-arrayexpress (123)
MassIVE (14)
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pride (2)
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Tissue

Biofilm (1)

Disease

Squamous cell carcinoma (1)
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Idiopathic dilated cardiomyopathy (1)
Normal (1)

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Mass spectrometry (5)
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454 GS FLX Titanium, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 2500, ILLUMINA (1)
NextSeq 500 (ILLUMINA), Illumina HiSeq 2500 (ILLUMINA) (1)
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Direct infusion MS - negative (1)
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Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2015 (21)
2014 (18)
2011 (17)
2016 (12)
2013 (9)
2012 (9)
2010 (9)
2024 (8)
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2025 (6)
2008 (6)
2017 (5)
2009 (5)
2023 (5)
2026 (3)
2020 (3)
2007 (3)
2005 (3)
2021 (2)
2019 (2)
2022 (1)

UNIPROT ID/AC

1433S_HUMAN (2)
A0A087WXI2_HUMAN (2)
A0A096LPE2_HUMAN (2)
A1AG1_HUMAN (2)
A1AG2_HUMAN (2)
A1AT_HUMAN (2)
A1BG_HUMAN (2)
A2AP_HUMAN (2)
A2GL_HUMAN (2)
A2MG_HUMAN (2)
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ACTB_HUMAN (2)
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ACTS_HUMAN (2)
ADIPO_HUMAN (2)
AFAM_HUMAN (2)
AGRG6_HUMAN (2)
ALBU_HUMAN (2)
ALS_HUMAN (2)
AMBP_HUMAN (2)
AMPN_HUMAN (2)
ANGT_HUMAN (2)
ANT3_HUMAN (2)
APMAP_HUMAN (2)
APOA1_HUMAN (2)
APOA2_HUMAN (2)
APOA4_HUMAN (2)
APOA_HUMAN (2)
APOB_HUMAN (2)
APOC1_HUMAN (2)

CHEBI ID

CHEBI:15428 (2)
CHEBI:16761 (2)
CHEBI:16856 (2)
CHEBI:16857 (2)
CHEBI:16919 (2)
CHEBI:17203 (2)
CHEBI:17345 (2)
CHEBI:17361 (2)
CHEBI:17895 (2)
CHEBI:78320 (2)
CHEBI:10014 (1)
CHEBI:10015 (1)
CHEBI:10016 (1)
CHEBI:10019 (1)
CHEBI:10093 (1)
CHEBI:110 (1)
CHEBI:12962 (1)
CHEBI:132659 (1)
CHEBI:132663 (1)
CHEBI:132666 (1)
CHEBI:132668 (1)
CHEBI:132669 (1)
CHEBI:132696 (1)
CHEBI:135667 (1)
CHEBI:13705 (1)
CHEBI:138560 (1)
CHEBI:141857 (1)
CHEBI:141858 (1)
CHEBI:141859 (1)
CHEBI:141860 (1)

Metabolite Name

Betaine (2)
Choline (2)
Creatine (2)
L-proline (2)
L-threonine (2)
L-tyrosine (2)
Lactic acid (2)
Thymine (2)
(+)-15,16-Dihydroxyoctadecanoic Acid (1)
(+)-Aschantin (1)
(+)-Dihydrokawain-5-Ol (1)
(+)-Galeon (1)
(+/-)-(Z)-2-(5-Tetradecenyl)Cyclobutanone (1)
(+/-)-Jasmonic Acid (1)
(+/-)-Naringenin (1)
(+/-)7-Epi Jasmonic Acid (1)
(-)-Epiafzelechin 3-Gallate (1)
(-)-Malyngolide (1)
(1(10)E,4A,5E)-1(10),5-Germacradiene-12-Acetoxy-4,11-Diol (1)
(11E,15Z)-9,10,13-Trihydroxy-11,15-Octadecadienoic Acid (1)
(17R)-17-Hydroxy-13-Methyl-17-Prop-2-Enyl-1,2,6,7,8,14,15,16-Octahydrocyclopenta[A]Phenanthren-3-One (1)
(1R,3S)-3-(6-Aminopurin-9-Yl)Cyclopentan-1-Ol (1)
(2R)-2-Acetyl-1-[(2S)-2-[Acetyl-[(2S)-2-[[(2S)-2-Amino-3-Hydroxypropanoyl]Amino]-3-Carboxypropanoyl]Amino]-6-Aminohexanoyl]Pyrrolidine-2-Carboxylic Acid (1)
(2R)-6-Methylpiperidine-2-Carboxylic Acid (1)
(2R,3R,4R)-2-Amino-4-Hydroxy-3-Methylpentanoic Acid (1)
(2S)-2-Amino-3-[3-[(2S)-2-Amino-3-Phenylpropanoyl]Oxyphenyl]Propanoic Acid (1)
(2S)-2-[[(2S)-2-[[(2S)-2-Amino-5-(Diaminomethylideneamino)Pentanoyl]Amino]-5-(Diaminomethylideneamino)Pentanoyl]Amino]-5-(Diaminomethylideneamino)Pentanoic Acid (1)
(3Beta,5Alpha,9Alpha,22E,24R)-3,5,9-Trihydroxy-23-Methylergosta-7,22-Dien-6-One (1)
(3Beta,6Alpha,19Alpha)-3,6,19-Trihydroxy-12-Ursen-28-Oic Acid (1)
(3S)-3-Hydroxycyclocitral (1)

First Public Date

2013 (1)

Study type

Transcription profiling by array (67)
RNA-seq of coding RNA (13)
Comparative genomic hybridization by array (6)
Other (5)
Methylation profiling by high throughput sequencing (5)
Genotyping by array (4)
ChIP-seq (4)
MicroRNA profiling by array (3)
Methylation profiling by array (3)
Transcription profiling by SAGE (2)
ChIP-chip by tiling array (2)
DNA-seq (2)
RNA-seq of coding RNA from single cells (2)
Transcription profiling by RT-PCR (1)
Ribo-seq (1)
Single nucleus RNA sequencing (1)
RNA-seq of total RNA (1)
RNA-seq of non coding RNA (1)

Release Date

2015 (20)
2014 (19)
2011 (19)
2025 (11)
2013 (11)
2016 (10)
2012 (10)
2010 (10)
2023 (10)
2022 (9)
2020 (8)
2009 (8)
2018 (7)
2008 (6)
2024 (5)
2021 (4)
2007 (4)
2019 (3)
2005 (3)
2017 (2)
2003 (2)
2026 (1)
2000 (1)

Lab affiliation

Department of Dental Medicine (DENTMED), OF, Karolinska Institutet (1)
Professor, Department of Dental Medicine (DENTMED), OF (1)

Tags

xref:PubMed:21750104 (1)

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Transcription Initiation Activity Sets Replication Origin Efficiency in Mammalian Cells

Genomic mapping of DNA replication origins (ORIs) in mammals provides a powerful means for understanding the regulatory complexity of our genome. Here we combine a genome-wide approach to identify preferential sites of DNA replication initiation at 0.4% of the mouse genome with detailed molecular an...

ORGANISM(S): Mus musculus

2010-05-22 | E-GEOD-15082 | biostudies-arrayexpress

M-OM-^CB-dependent yabJ-spoVG operon involved in regulation of extracellular nuclease, lipase and protease expression in Staphylococcus aureus

The alternative sigma factor M-OM-^CB of Staphylococcus aureus is involved in the coordination of the general stress response, expression of virulence determinants and modulation of antibiotic resistance levels. It controls a large regulon, either directly by recognizing conserved M-OM-^CB promoter ...

ORGANISM(S): Staphylococcus aureus

2011-11-23 | E-GEOD-30115 | biostudies-arrayexpress

Genome-wide mapping of human DNA-replication origins: levels of transcription at Orc1 sites regulate origin selection and replication timing

We report the genome-wide mapping of Orc1 binding-sites in mammals and their validation as active DNA-replication origins (ORIs). Orc1 sites are universally associated with transcription start sites (TSSs) of coding or non-coding RNAs. Transcription levels at the Orc1 sites directly correlate with r...

ORGANISM(S): Homo sapiens

2012-09-18 | E-GEOD-37583 | biostudies-arrayexpress

Microarray analysis of microbiota of gingival lesions in noma patients

We used phylogenetic low-density microarrays targeting the 16S rRNA gene to characterize the gingival flora of acute noma and acute necrotizing gingivitis lesions, and compared them to healthy control subjects of the same geographical and social background. Various types of samples were collected (c...

ORGANISM(S): human oral metagenome

2013-12-27 | E-GEOD-43612 | biostudies-arrayexpress

Genome-wide haplotyping of human single cells

A method to infer genome-wide haplotypes from the analysis of one or two single (human) cells has tremendous applicative value. It would revolutionize not only preimplantation genetic diagnosis of in vitro fertilized human embryos in the clinic, but also animal breeding programs by enabling genome-w...

ORGANISM(S): Homo sapiens

2012-10-01 | E-GEOD-17318 | biostudies-arrayexpress

Genomic and physiological responses to strong selective pressure during late organogenesis: how natural Fundulus heteroclitus populations cope with persistent environmental pollution Superfund Site

This study explores the synergistic effects of two model PAHs, an aryl hydrocarbon receptor (AHR) agonist (M-NM-2-naphthoflavone) and a cytochrome P4501A (CYP1A) inhibitor (M-NM-1-naphthoflavone), on gene expression in stage 31 embryos from two different population. One population (Elizabeth River ...

ORGANISM(S): Fundulus heteroclitus

2013-09-30 | E-GEOD-47654 | biostudies-arrayexpress

Complete Genome Sequence of Actinomyces oris Strain K20, Isolated from an Oral Apical Lesion.

Not available

S-EPMC9387227 | biostudies-literature

The Mitochondrial Calcium Uniporter controls skeletal muscle mass in vivo

Muscle atrophy contributes to the poor prognosis of many physiopathological conditions, but pharmacological therapies are still limited. Muscle activity leads to major swings in mitochondrial [Ca2+] which control aerobic metabolism, cell death and survival pathways. We have investigated in vivo the ...

ORGANISM(S): Mus musculus

2015-03-05 | E-GEOD-60931 | biostudies-arrayexpress

Gene expression profile after oral vaccination against infectious pancreatic necrosis virus (IPNV)

Oral immunization of trout against infectious pancreatic necrosis virus (IPNV) have been recently reported by using a DNA vector coding the viral capsid VP2 gene encapsulated in alginate microspheres. We report here an study of the transcripts in head kidney and pyloric ceca 7 days after oral vaccin...

ORGANISM(S): Oncorhynchus mykiss

2012-07-18 | E-GEOD-31591 | biostudies-arrayexpress

Implementation and Evaluation of a Training Program for Traditional Healers to Improve Knowledge of Noma (Cancrum Oris) in Burkina Faso.