Otto Peter P - OmicsDI

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Unknown (26)
Transcriptomics (8)
Genomics (8)
Metabolomics (3)
Proteomics (3)
Models (1)

Organisms

Homo sapiens (14)
Mus musculus (3)
Plasmodium falciparum (1)
Plasmodium falciparum 7G8 (1)

Repository

biostudies-arrayexpress (9)
EGA (7)
MetaboLights (3)
pride (3)
BioModels (1)

Tissue

Cell culture (1)
Early embryonic cell (1)
Embryo (1)
Liver (1)
Skeletal muscle (1)

Disease

Breast cancer (1)
Metabolic dysfunction-associated steatotic liver disease (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (3)
Shotgun proteomics (3)
Mass spectrometry (2)
Mass spectrometry assay (1)

Instrument Platform

DNBSEQ-G400 (1)
Illumina HiSeq 4000 (1)
NextSeq 500 (1)
Flow injection analysis MS - negative (1)
Liquid Chromatography MS - negative - HILIC (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2022 (4)
2014 (4)
2024 (2)
2020 (2)
2016 (1)
2012 (1)
2026 (1)
2023 (1)

UNIPROT ID/AC

O15111 (1)
O15519 (1)
P01375 (1)
P09874 (1)
P19438 (1)
P19838 (1)
P21580 (1)
P25963 (1)
P42574 (1)
P55212 (1)
P98170 (1)
Q12933 (1)
Q13158 (1)
Q13546 (1)
Q14790 (1)
Q15628 (1)
Q9NZS9 (1)

ENSEMBL ID

ENST00000216797 (1)
ENST00000237289 (1)
ENST00000309955 (1)
ENST00000371199 (1)

CHEBI ID

CHEBI:102524; HMDB0014386; HMDB14386 (1)
CHEBI:1050862; HMDB0013696; HMDB0032997; HMDB0032999; HMDB13696; HMDB32997; HMDB32999 (1)
CHEBI:10979; HMDB0032418; HMDB0032422; HMDB32418; HMDB32422 (1)
CHEBI:110179; CHEBI:132606; HMDB0030767; HMDB0037774; HMDB0037775; HMDB0094645; HMDB30767; HMDB37774; HMDB37775; HMDB94645 (1)
CHEBI:1178473; HMDB0031339; HMDB0032968; HMDB0032969; HMDB0032970; HMDB31339; HMDB32968; HMDB32969; HMDB32970 (1)
CHEBI:132607; HMDB0030555; HMDB0094679; HMDB30555; HMDB94679 (1)
CHEBI:132854; HMDB0032662; HMDB0036029; HMDB0037179; HMDB32662; HMDB36029; HMDB37179 (1)
CHEBI:133460; HMDB0060013; HMDB60013 (1)
CHEBI:133815; HMDB0030856; HMDB0040140; HMDB30856; HMDB40140 (1)
CHEBI:136220 (1)
CHEBI:137329 (1)
CHEBI:140360 (1)
CHEBI:167099; HMDB0034413; HMDB0040578; HMDB34413; HMDB40578 (1)
CHEBI:17976; HMDB0033197; HMDB0036047; HMDB0059661; HMDB33197; HMDB36047; HMDB59661 (1)
CHEBI:20607; HMDB0000982; HMDB0039229; HMDB00982; HMDB39229 (1)
CHEBI:239286; HMDB0015200; HMDB15200 (1)
CHEBI:246417; HMDB0029717; HMDB29717 (1)
CHEBI:256036; HMDB0029742; HMDB0031860; HMDB0032933; HMDB29742; HMDB31860; HMDB32933 (1)
CHEBI:26308; CHEBI:87281; CHEBI:87503; HMDB0031717; HMDB0032271; HMDB0032410; HMDB0032495; HMDB0036193; HMDB0037619; HMDB0038299; HMDB0039653; HMDB0040413; HMDB0041306; HMDB31717; HMDB32271; HMDB32410; HMDB32495; HMDB36193; HMDB37619; HMDB38299; HMDB39653; HMDB40413; HMDB41306 (1)
CHEBI:3395; CHEBI:73508; HMDB0014336; HMDB0028827; HMDB0028864; HMDB0029157; HMDB0029439; HMDB14336; HMDB28827; HMDB28864; HMDB29157; HMDB29439 (1)
CHEBI:356329; CHEBI:356660; HMDB0000721; HMDB0011178; HMDB00721; HMDB11178 (1)
CHEBI:356659; HMDB0011174; HMDB0011175; HMDB0028915; HMDB0028937; HMDB11174; HMDB11175; HMDB28915; HMDB28937 (1)
CHEBI:37270; HMDB0010730; HMDB0030982; HMDB0032370; HMDB10730; HMDB30982; HMDB32370 (1)
CHEBI:385866; HMDB0000706; HMDB0011167; HMDB0028760; HMDB0028991; HMDB00706; HMDB06113; HMDB11167; HMDB28760; HMDB28991 (1)
CHEBI:417823; HMDB0030965; HMDB0037517; HMDB30965; HMDB37517 (1)
CHEBI:42334; HMDB0062295; HMDB62295 (1)
CHEBI:43355; HMDB0000682; HMDB00682; HMDB03309 (1)
CHEBI:479286; HMDB0013631; HMDB13631 (1)
CHEBI:479320; HMDB0013308; HMDB0062338; HMDB13308; HMDB62338 (1)
CHEBI:48498; HMDB0029726; HMDB0033746; HMDB29726; HMDB33746 (1)

Metabolite Name

(+)-(1R,2R)-1,2-Diphenylethane-1,2-diol (1)
(+/-)-6-Acetonyldihydrochelerythrine (1)
(-)-Nopol (1)
(-)-trans-Carveol (1)
(10S,11S)-Pterosin C (1)
(1E,3E)-4-Hydroxybuta-1,3-diene-1,2,4-tricarboxylate (1)
(2-hydroxy-2-{9-hydroxy-7-oxo-2H,3H,7H-furo[3,2-g]chromen-2-yl}propoxy)sulf... (1)
(22Alpha)-hydroxy-campest-4-en-3-one (1)
(3''x,5''a,9''x,10''b)-O-(3-Hydroxy-6-oxo-7-drimen-11-yl)umbelliferone (1)
(3R,7R)-1,3,7-Octanetriol (1)
(3S,5R,6S,7E,9x)-7-Megastigmene-3,6,9-triol 9-glucoside (1)
(3S,7E,9R)-4,7-Megastigmadiene-3,9-diol 9-[apiosyl-(1->6)-glucoside] (1)
(3Z,6Z)-3,6-Nonadien-1-ol (1)
(3beta,22E)-26,27-Dinorergosta-5,22-dien-3-ol (1)
(4-{3-[2,4-dihydroxy-5-(3-methylbut-2-en-1-yl)phenyl]-2-hydroxy-3-oxopropyl... (1)
(5-{4-[2-(3,4-dihydroxyphenyl)-3,5,7-trihydroxy-3,4-dihydro-2H-1-benzopyran... (1)
(7''R,8''R)-4,7''-Epoxy-3''-methoxy-4'',5,9,9''-lignanetetrol 9''-glucoside (1)
(8E,15E)-1,8,15-Heptadecatriene-11,13-diyne (1)
(9Z,11E,13E,15Z)-4-Oxo-9,11,13,15-octadecatetraenoic acid (1)
(Ac)2-L-Lys-D-Ala (1)
(Iso)Citrate (1)
(Iso)Leucine (1)
(R)-1,3-Octanediol (1)
(R)-2-Benzylsuccinate (1)
(R)-2-Hydroxysterculic acid (1)
(R)-3-Hydroxy-5-phenylpentanoic acid (1)
(R)-3-Hydroxy-Octadecanoic acid (1)
(R)-6''-O-(4-Geranyloxy-2-hydroxycinnamoyl)-marmin (1)
(R)-Marmin (1)
(R)-Shinanolone (1)

IsPrivate

False (1)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (5)
RNA-seq of coding RNA (2)
Animal - High-throughput sequencing (1)
DNA-seq (1)

Release Date

2022 (6)
2014 (6)
2019 (4)
2020 (3)
2023 (3)
2016 (2)
2012 (2)
2025 (2)
2013 (2)
2026 (1)
2021 (1)
2018 (1)
2017 (1)
2015 (1)

Lab affiliation

Leibniz-Institut für Analytische Wissenschaften – ISAS – e.V. Otto-Hahn-Straße 6b 44227 Dortmund, Germany P: +49 (0)2 31.13 92-100 F: +49 (0)2 31.13 92-200 albert.sickmann@isas.de www.isas.de twitter.com/isas_Leibniz (1)
Otto Krayer Professor Department of Systems Biology Head of the Harvard Program in Therapeutic Sciences - HiTS Harvard Medical School (1)
dana farber cancer institute and harvard medical school (1)

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Interorganelle lipid flux revealed by enzymatic mass tagging in vivo

The distinct activities of cellular organelles are dependent on the proper function of their membranes. Coordinated membrane biogenesis of the different organelles necessitates interorganelle transport of lipids from their site of synthesis to their destination membranes. Several proteins and traffi...

2022-03-22 | MTBLS3415 | MetaboLights

Periodic temperature changes drive the proliferation of self-replicating RNAs in vesicle populations.

Not available

S-EPMC9984477 | biostudies-literature

Inhibition of FGF and TGF-β Pathways in hESCs Identify STOX2 as a Novel SMAD2/4 Cofactor.

Not available

S-EPMC7765495 | biostudies-literature

Development of Macrocyclic PRMT5-Adaptor Protein Interaction Inhibitors.

Not available

S-EPMC9706563 | biostudies-literature

Maintenance of p-eIF2alpha levels by the eIF2B complex is vital for colorectal cancer

Not available

S-SCDT-10_1038-S44318-025-00381-9 | biostudies-other

Quantitative imaging of electric surface potentials with single-atom sensitivity.

Not available

S-EPMC6656579 | biostudies-literature

AMPK activation induces RALDH+ tolerogenic dendritic cells by rewiring glucose and lipid metabolism.

Dendritic cell (DC) activation and function are underpinned by profound changes in cellular metabolism. Several studies indicate that the ability of DCs to promote tolerance is dependent on catabolic metabolism. Yet the contribution of AMP-activated kinase (AMPK), a central energy sensor promoting c...

2024-08-16 | MTBLS10647 | MetaboLights

Lower plasma creatinine and urine albumin in individuals at increased risk of type 2 diabetes with factor v leiden mutation.

Not available

S-EPMC3960766 | biostudies-literature

Cortical dynamics during cell motility are regulated by CRL3(KLHL21) E3 ubiquitin ligase.

Not available

S-EPMC5031805 | biostudies-literature

gDNA-seq of 7G8 subclones with different var expression patterns

The parasite Plasmodium falciparum is responsible for severe malaria, which remains a major cause of death, particularly in sub-Saharan Africa. The reference strain NF54 (or its subclone 3D7) is commonly used for controlled human malaria infection (CHMI), but recently strains with a different geogra...

ORGANISM(S): Plasmodium falciparum

2022-09-22 | E-MTAB-12158 | biostudies-arrayexpress

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49 Results

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OmicsDI is part of the ELIXIR infrastructure

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