Ovis aries - OmicsDI

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Genomics (1216)
Transcriptomics (655)
Unknown (375)
Proteomics (181)
Metabolomics (56)
Methylation profiling (23)
Other (13)

Organisms

Ovis aries (637)
Mus musculus (142)
Homo sapiens (98)
Bos taurus (96)
Rattus norvegicus (30)
Capra hircus (22)
Sus scrofa (22)
Bordetella bronchiseptica (11)
Drosophila melanogaster (10)
Schizosaccharomyces pombe (6)
Bordetella pertussis (6)
Aedes aegypti (6)
Staphylococcus aureus (6)
Saccharomyces cerevisiae (6)
Bartonella henselae (4)
Porphyromonas gingivalis (4)
Campylobacter jejuni (4)
Saccharomyces cerevisiae W303 (3)
Porphyromonas gingivalis W83 (2)
Helicobacter pylori (2)
Escherichia coli (2)
Amblyomma americanum (1)
Fusobacterium nucleatum subsp. nucleatum ATCC 25586 (1)
Taenia multiceps (1)
uncultured organism (1)
Bacteria (1)
Staphylococcus aureus subsp. aureus MSSA476 (1)
Streptococcus mutans UA159 (1)
Mycobacterium avium subsp. paratuberculosis (1)
Teladorsagia circumcincta (1)

Organisms

Ovis aries (947)
sheep gut metagenome (5)
Ovis ammon polii x Ovis aries (3)
Ovis aries aries (2)
Ovis (2)
gut metagenome (2)
Ovis aries musimon (1)
Clostridium sp. cpc1 (1)
Cervus elaphus elaphus (1)
lung metagenome (1)
rumen metagenome (1)
sheep metagenome (1)
Ovis vignei (1)
Capra hircus (1)
Salmonella enterica (1)

Repository

ENA (1072)
geo (452)
biostudies-arrayexpress (372)
pride (97)
EVA (39)
MetaboLights (37)
iProX (35)
MassIVE (20)
MetabolomicsWorkbench (14)
GNPS (5)
jPOST (2)

Tissue

Bone (11)
Skin (8)
Heart (6)
Blood serum (5)
Cell culture (5)
Epithelial cell (5)
Blood plasma (4)
Hair (4)
Rumen epithelium (4)
Sperm (4)
Blood (3)
Blood (3)
Fibroblast (3)
Kidney (3)
Liver (3)
Milk (3)
Tendon (3)
Adipose tissue (2)
Cerebrospinal fluid (2)
Duodenum (2)
Egg (2)
Feces (2)
Heart (2)
Long bone (2)
Lung (2)
Macrophage (2)
Smooth muscle (1)
Arteries (1)
Placenta (1)
Unspecified (1)

Disease

Disease free (7)
Normal (4)
Oxidative stress (2)
T. circumcincta infection (1)
Multibacillary (1)
Uninfected (1)
Dengue 2 (JAM1409) infected (1)
Autoimmune disorder (1)
Infected (1)
Scrapie infected (1)
Non-infected (1)
SS2-infected (1)
Psoroptes ovis infestation (1)
Maternal Hypoxemia (1)
Hypercortisolemia (1)
Atrial fibrillation (1)
Congestive heart failure (1)
Fascioliasis (1)
Mixed disorder as reaction to stress (1)
Prion disease (1)
Tricuspid valve disease (1)

Technology Type

Mass Spectrometry (104)
Shotgun proteomics (54)
Mass spectrometry (24)
Bottom-up proteomics (18)
Data-dependent acquisition (14)
Mass spectrometry assay (12)
SWATH MS (10)
Gel-based experiment (8)
NMR (7)
ESI (6)
Data-independent acquisition (2)
SRM/MRM (2)
NMR spectroscopy (1)
EI (1)
MSE (1)
Mass spectrometry imaging (1)
Metaproteomics (1)
Top-down proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (27)
- (24)
Illumina HiSeq 2000 (19)
Illumina HiSeq 2500 (15)
NextSeq 500 (9)
GenePix 4000B [Axon Instruments] (7)
Illumina HiSeq 4000 (5)
Illumina MiSeq (3)
Illumina Genome Analyzer II (2)
Scanning hardware (2)
Illumina NovaSeq X (2)
UltraTM RNA Library Prep Kit (NEBNext®) (1)
MiRNeasy Mini Kit from Qiagen® (1)
NEBNext UltraTM RNA Library Prep Kit (1)
Trizol reagent (Invitrogen), Agilent 2100 Bioanalyzer (1)
Desktop (1)
Bacteriological Laboratory (1)
Quantseq FWD kit (Lexogen, Austria) was used to prepare libraries for NGS. Reverse transcription of RNA, amplification of libraries, quality control of libraries and purification were performed exactly as described in manual provided with kit. (1)
RNAeasy kit (1)
Cell culture lab (1)
Illumina Genome Analyzer Iix (1)
10X chromium (1)
Lightwave (1)
SMARTerTM Ultra Low RNA Kit (1)
10x Genomics (1)
AB SOLiD System 3.0 (1)
Spectronic Helios Alpha UV-Vis spectrophotometer (1)
Illumina Genome Analyzer IIx (1)
G2505A DNA microarray scanner [Agilent] (1)
NanoDrop (1)

Publication Date

2025 (82)
2014 (81)
2023 (76)
2022 (69)
2015 (67)
2010 (61)
2026 (60)
2013 (58)
2021 (57)
2024 (54)
2016 (52)
2018 (48)
2017 (47)
2012 (46)
2020 (41)
2019 (41)
2011 (34)
2009 (27)
2008 (19)
2007 (9)
2006 (6)
2004 (4)
2005 (1)

CHEBI ID

CHEBI:18257 (5)
CHEBI:16196 (5)
CHEBI:16040 (5)
CHEBI:16919 (5)
CHEBI:24898 (4)
CHEBI:18211 (4)
CHEBI:28837 (4)
CHEBI:17750 (4)
CHEBI:15891 (4)
CHEBI:18183 (4)
CHEBI:28842 (4)
CHEBI:17568 (4)
CHEBI:17203 (4)
CHEBI:16235 (4)
CHEBI:15428 (4)
CHEBI:16414 (4)
CHEBI:16643 (4)
CHEBI:18344 (4)
CHEBI:17368 (4)
CHEBI:27432 (4)
CHEBI:41254 (4)
CHEBI:38635 (3)
CHEBI:7466 (3)
CHEBI:67045 (3)
CHEBI:27410 (3)
CHEBI:28680 (3)
CHEBI:74750 (3)
CHEBI:143726 (3)
CHEBI:46961 (3)
CHEBI:29019 (3)

Metabolite Name

Creatinine (9)
Creatine (8)
Uracil (7)
Ornithine (7)
Taurine (7)
Stearic acid (7)
L-Proline (7)
Guanine (7)
Uridine (7)
Hypoxanthine (7)
Hydroquinone (6)
Niacinamide (6)
L-Lysine (6)
Cytosine (6)
Guanosine (6)
L-Valine (6)
Pentaethylene glycol (5)
N6,N6,N6-Trimethyl-L-lysine (5)
Phenylacetaldehyde (5)
Palmitamide (5)
PC(16:0/16:0) (5)
Ketoleucine (5)
Betaine (5)
Pyroglutamic acid (5)
Citrulline (5)
Phytosphingosine (5)
Prolylhydroxyproline (5)
Pyridoxine (5)
L-Histidine (5)
Tauroursodeoxycholic acid (5)

First Public Date

2024 (151)
2025 (136)
2021 (112)
2023 (100)
2026 (96)
2022 (94)
2020 (77)
2014 (69)
2019 (67)
2018 (42)
2017 (40)
2013 (32)
2016 (28)
2015 (28)

Classification

bacteria (2)

Study type

Transcription profiling by array (151)
RNA-seq of coding RNA (68)
ChIP-seq (41)
Comparative genomic hybridization by array (17)
Methylation profiling by array (17)
ChIP-chip by tiling array (13)
RNA-seq of non coding RNA (10)
Methylation profiling by high throughput sequencing (9)
Unknown experiment type (7)
Other (7)
RNA-seq of coding RNA from single cells (6)
Animal - High-throughput sequencing (3)
Transcription profiling by tiling array (3)
ATAC-seq (3)
RIP-seq (3)
RNA-seq of total RNA (3)
ChIP-chip by array (2)
Genotyping by array (2)
Transcription profiling by SAGE (1)
Baseline (1)
MeDIP-seq (1)
CLIP-Seq (1)
MicroRNA profiling by high throughput sequencing (1)
MicroRNA profiling by array (1)

Release Date

2014 (68)
2010 (56)
2021 (55)
2022 (54)
2015 (54)
2023 (43)
2013 (43)
2025 (41)
2016 (41)
2020 (39)
2012 (39)
2019 (35)
2024 (34)
2011 (27)
2018 (25)
2009 (25)
2017 (19)
2008 (16)
2026 (11)
2007 (11)
2006 (4)
2004 (3)
2005 (2)
2003 (1)
1998 (1)

Lab affiliation

University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (3)
Christchurch Heart Institute, Department of Medicine, University of Otago, Christchurch (2)
Department of Archaeology, University of York, Heslington, YO10 5DD, United Kingdom (2)
Head of Scientific Archeology Unit, Weizmann Institute of Science (2)
Museum national d'Histoire naturelle (2)
Research Officer|Proteomics and Small Molecule Mass Spectrometry Laboratory | Central Analytical Research Facility (CARF)| Queensland University of Technology | Address: Level 6, P Block, Gardens Point Campus, 2 George St Brisbane QLD 4000 (2)
198 shiqiao road, hangzhou, zhejiang province, P.R.China (1)
1Neonatal Research, Murdoch Children’s Research Institute, Parkville, Australia 2Department of Paediatrics, University of Melbourne, Melbourne, Australia (1)
Assistant Professor, Department of Food Science and Technology, Texas A&M University, College Station, TX 77843, USA (1)
Baker Heart & Diabetes Institute and Murdoch Childrens Research Institute (pmpf@unimelb.edu.au) (1)
Bioengineering (1)
CEA-Marcoule, ProGenoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Ceze, France (1)
CNRS, INSERM, Univ. Lille, CHU Lille, Institut Pasteur de Lille, Centre d’Infection et d’Immunité de Lille, 59000 Lille, France (1)
Calpain Project Department of Advanced Science for Biomolecules Igakuken (Tokyo Metropolitan Institute of Medical Science) 2-1-6 Kamikitazawa, Setagaya-ku Tokyo 156-8506, Japan (1)
Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, 1350 Copenhagen, Denmark (1)
Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, 1350, Copenhagen, Denmark (1)
Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC), Madrid, Spain; Centro de Biología Molecular Severo Ochoa, CSIC-UAM, Madrid, Spain. (1)
College of Animal Science and Technology, Anhui Agricultural University, P. R. China. (1)
College of Animal Science and Technology, Northwest A&F University, Yangling (1)
Colorado Center for Reproductive Medicine (1)
Colorado State University, Department of Animal Science (1)
Departamento de Bioquímica y Biología Molecular, Universidad de Córdoba; Campus de Excelencia Internacional CeiA3, 14071 Córdoba (Spain) (1)
Department of Animal Reproduction, Spanish National Institute for Agricultural and Food Research and Technology (INIA), Avda. Puerta de Hierro km 5.9, 28040 Madrid, Spain. (1)
Department of Archaeology, Max Planck Institute for the Science of Human History. (1)
Department of Biochemical Sciences, Faculty of Pharmacy, Charles University, Hradec Kralove, Czech Republic (1)
Department of Chemical Sciences, University of Catania, Viale A. Doria 6, 95125 Catania, Italy (1)
Department of Food Science & Technology University of California, Davis Davis, CA, USA (1)
Department of Medicine, Division of Canadian Centre for Rural and Agricultural Health, College of Medicine, University of Saskatchewan (1)
Department of Obstetrics & Gynecology Oregon Health & Science University 3181 SW Sam Jackson Park Road Portland, Oregon 97239, USA (1)
Department of Pharmacology, Yale University School of Medicine (1)

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Integrated metabolomics and transcriptome revealed the effect of fermented Lycium barbarum residue promoting Ovis aries immunity

Lycium barbarum residue contains abundant bioactive nutrients which can be used as feed supplement. This study investigated the effects of fermented and non-fermented Lycium barbarum residues (RFW and RW) on the meat quality and immunity of sheep (Ovis aries). Fifty-four Tan sheep were randomly divi...

2022-04-06 | MTBLS4507 | MetaboLights

MeDIP sequencing of Ovis aries

We have completed the high quality reference genome for domestic sheep (Oar v3.1). Early-stage Illumina GA sequence platform sequenced less reads in high GC content regions than in other regions. To read through higher GC content regions, we generated 2 Gb MeDIP-seq data for filling gaps in sheep re...

ORGANISM(S): Ovis aries

2014-06-06 | E-GEOD-56644 | biostudies-arrayexpress

Transcriptome sequencing of Ovis aries

We have completed the high quality reference genome for domestic sheep (Oar v3.1) and performed a detailed survey of gene expression across different tissues. RNA-seq data of 7 tissue types from the reference female Texel and skin tissue from a Gansu alpine fine wool sheep were sequenced. Here is t...

ORGANISM(S): Ovis aries

2014-06-06 | E-GEOD-56643 | biostudies-arrayexpress

Ovis aries

Ovis aries Metagenome

PRJNA1116343 | ENA

Aristaeus chip 1.0: an in situ synthesized oligonucleotide microarray for Ovis aries

Here we present a high-density in situ synthesized microarray for Ovis aries, named Aristaeus, designed by means of a pipeline of software instruments that, starting from non-annotated redundant EST sequences, selects oligonucleotides suitable for in situ generation on chip. The chip was tested by c...

ORGANISM(S): Ovis aries

2013-02-05 | E-GEOD-31044 | biostudies-arrayexpress

Ovis aries

Ovis aries Genome sequencing

PRJNA306082 | ENA

Ovis aries

Ovis aries Genome sequencing

PRJNA1085004 | ENA

Ovis aries

Ovis aries Raw sequence reads

PRJNA1238310 | ENA

Ovis aries