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Unknown (1464)
Transcriptomics (86)
Genomics (58)
Proteomics (32)
Metabolomics (23)
Models (4)

Organisms

Homo sapiens (98)
Mus musculus (42)
Saccharomyces cerevisiae (6)
Rattus norvegicus (5)
mixed sample (3)
Mammalia (2)
Drosophila melanogaster (2)
Eucalyptus camaldulensis x Eucalyptus grandis (1)
Drosophila simulans (1)
Nicotiana benthamiana (1)
Streptomyces coelicolor (1)
Danio rerio (1)
Arabidopsis thaliana (1)
Mycobacterium tuberculosis H37Rv (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. D23580 (1)

Organisms

Oligoryzomys nigripes (3)
Homo sapiens (2)

Repository

biostudies-arrayexpress (93)
EGA (45)
pride (26)
MetaboLights (19)
ENA (6)
BioModels (4)
GNPS (4)
MassIVE (3)
PAXDB (3)

Tissue

Cell culture (13)
Embryonic stem cell (4)
Astrocyte (1)
Bone tissue (1)
Brain (1)
Breast (1)
Embryo (1)
Epithelial cell differentiation involved in embryonic placenta development (1)
Epithelial cell of pancreas (1)
Fat body (1)
Macrophage (1)
Neuronal stem cell (1)
Pancreas (1)
Retinal pigment epithelial cell (1)
Whole body (1)

Disease

Melanoma (3)
Leukemic (1)
Nevus (1)
Brain cancer (1)
Breast cancer (1)
Osteosarcoma (1)
Pancreatic ductal adenocarcinoma (1)
Tuberculosis (1)

Technology Type

Mass Spectrometry (26)
Mass spectrometry (15)
Shotgun proteomics (11)
Illumina 15K (8)
Bottom-up proteomics (7)
Affinity purification coupled with mass spectrometry proteomics (4)
Data-independent acquisition (4)
DiaPASEF (4)
Mass spectrometry assay (2)
NMR spectroscopy (2)
Affymetrix 6.0 (1)
Illumina (various), Illumina (Various) (1)
Illumina 1.2M, Affymetrix 6.0 (1)
Illumina HiSeq 2000 (1)
Illumina_670k - Illuminus, Affymetrix 6.0, Illumina 1.2M (1)
All-ion fragmentation (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (11)
Illumina HiSeq 2500 (7)
Illumina NovaSeq 6000 (5)
Illumina HiSeq 4000 (5)
Liquid Chromatography MS - negative - reverse phase (4)
NextSeq 2000 (3)
NextSeq 550 (3)
NextSeq 500 (3)
GenePix 4000A [Axon Instruments] (2)
Q Exactive UHMR (2)
Q Exactive (2)
SYNAPT G2-Si (2)
TSQ Altis (2)
Xevo G2 XS Tof (2)
Xevo G2-XS QTof (2)
Nuclear Magnetic Resonance (NMR) - (2)
Scanning hardware (1)
Q Exactive Plus (1)
Orbitrap Fusion Lumos (1)
Orbitrap HFX (1)
Atmospheric Pressure Matrix Assisted Laser Desorption/Ionization orbitrap MS - Positive (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - positive - hilic (1)
MS Imaging - Atmospheric Pressure Matrix Assisted Laser Desorption/Ionization orbitrap MS - Positive (1)
Tandem Gas Chromatography MS - positive (1)

Publication Date

2024 (22)
2023 (19)
2022 (12)
2015 (11)
2014 (10)
2026 (9)
2021 (9)
2008 (7)
2012 (6)
2007 (6)
2025 (5)
2013 (5)
2011 (5)
2006 (5)
2019 (5)
2017 (3)
2010 (3)
2020 (2)
2018 (2)
2016 (2)
2009 (2)
2005 (1)
2003 (1)

UNIPROT ID/AC

4565.Traes_1DL_692C9DA67.1 (3)
4565.Traes_1DL_CC664F4B6.1 (3)
4565.Traes_1DS_66B67E9B41.2 (3)
4565.Traes_2BL_7B50D9C87.1 (3)
4565.Traes_2DL_86DFC9B0B.1 (3)
4565.Traes_2DL_EFEF40224.1 (3)
4565.Traes_2DS_D09901183.1 (3)
4565.Traes_3B_04EEDB7DF.1 (3)
4565.Traes_3B_FFA902DFC.1 (3)
4565.Traes_3DL_EA981FE27.1 (3)
4565.Traes_3DL_EB6A17449.1 (3)
4565.Traes_4DL_BBA5E7BFC.1 (3)
4565.Traes_4DL_D2F5D476F.1 (3)
4565.Traes_4DL_FB5D1C901.1 (3)
4565.Traes_4DS_557846977.1 (3)
4565.Traes_4DS_8D47B4C37.1 (3)
4565.Traes_4DS_D4B68AD99.1 (3)
4565.Traes_5BS_2983EE249.1 (3)
4565.Traes_5DL_17E38786F.1 (3)
4565.Traes_5DL_7C5517ADE.1 (3)
4565.Traes_5DL_95DBDBAD1.1 (3)
4565.Traes_5DL_ABE67F1AD.1 (3)
4565.Traes_5DL_D80132A30.1 (3)
P11802 (2)
P24385 (2)
P24864 (2)
P24941 (2)
P42225 (2)
Q01094 (2)
Q08999 (2)

CHEBI ID

CHEBI:16359 (3)
CHEBI:16704 (3)
CHEBI:16811 (3)
CHEBI:17750 (3)
CHEBI:28865 (3)
CHEBI:35038 (3)
CHEBI:64563 (3)
CHEBI:73024 (3)
CHEBI:15422 (2)
CHEBI:16541 (2)
CHEBI:16595 (2)
CHEBI:29108 (2)
CHEBI:47867 (2)
CHEBI:139138 (2)
CHEBI:143745 (2)
CHEBI:143757 (2)
CHEBI:15354 (2)
CHEBI:15355 (2)
CHEBI:15428 (2)
CHEBI:15676 (2)
CHEBI:15727 (2)
CHEBI:15891 (2)
CHEBI:16335 (2)
CHEBI:16709 (2)
CHEBI:16919 (2)
CHEBI:173703 (2)
CHEBI:18186 (2)
CHEBI:18211 (2)
CHEBI:18237 (2)
CHEBI:182784 (2)

Metabolite Name

Cholic acid (3)
Choline (3)
Glycine (3)
Tris(2-butoxyethyl) phosphate (3)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
9(10)-EpOME (2)
Acetic acid (2)
Acetylcarnitine (2)
Acetylcholine (2)
Anserine (2)
Betaine (2)
Carnosine (2)
Citric acid (2)
Citrulline (2)
Creatine (2)
Creatinine (2)
Elaidic acid (2)
Formic acid (2)
Glutamine (2)
Histamine (2)
Histidine (2)
Isoleucine (2)
L-Alanine (2)
L-Carnitine (2)
L-Glutamic acid (2)
L-Glutamine (2)
L-Histidine (2)

First Public Date

2026 (4)
2021 (1)
2015 (1)

Modelling Approach

Ordinary differential equation model (4)

Lab affiliation

Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (7)
University of Dundee, School of Life Sciences (4)
Centre for Gene Regulation and Expression School of Life Sciences, University of Dundee, Dundee (2)
Molecular Cell and Developmental Biology, School of Life Sciences, University of Dundee, United Kingdom (2)
Cancer Research UK Manchester Institute (1)
Centre for Gene Regulation and Expression School of Life Sciences, University of Dundee (1)
Centre for Gene Regulation and Expression School of Life Sciences, University of Dundee, Dundee, United Kingdom (1)
Centre for Gene Regulation and Expression, School of Life Science, University of Dundee (1)
Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany (1)
Institute of Biochemistry Medical Faculty University of Cologne Germany (1)
Massachusetts Institute of Technology (1)
Professor of Chemical Biology, Imperial College London Satellite Group Leader, Francis Crick Institute Founder & SAB, Myricx Pharma Ltd Room 301B, Molecular Sciences Research Hub, White City Campus 82 Wood Lane, London W12 0BZ, UK Tel.: 020759 + Ext. 43752 or 45821 (group) http://www.imperial.ac.uk/tate-group/ (1)
Professor of Microbial Pathogenesis Institute of Integrative Biology Room 308, Biosciences Building, University of Liverpool Crown Street, Liverpool L69 7ZB, United Kingdom (1)
School of Biosciences University of Sheffield United Kingdom (1)
School of Life Sciences Faculty of Science University of Technology Sydney NSW 2007 (1)

IsPrivate

False (4)

Submitter Keywords

Manuscript Accepted (1)

Study type

Transcription profiling by array (48)
RNA-seq of coding RNA (24)
ChIP-seq (7)
RNA-seq of coding RNA from single cells (3)
Genotyping by array (2)
Comparative genomic hybridization by array (2)
RNA-seq of total RNA (2)
ChIP-chip by tiling array (1)
Transcription profiling by tiling array (1)
RNAi profiling by array (1)
ChIP-chip by array (1)
Methylation profiling by array (1)

Release Date

2022 (162)
2023 (161)
2021 (153)
2025 (131)
2024 (120)
2020 (113)
2019 (93)
2018 (91)
2015 (71)
2017 (69)
2016 (58)
2014 (58)
2013 (46)
2012 (46)
2011 (42)
2010 (29)
2009 (25)
2008 (24)
2026 (21)
2007 (14)
2006 (9)
2005 (6)
2003 (5)
2004 (3)
2000 (3)
2002 (1)
1999 (1)
1998 (1)
1997 (1)

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Metabolomics to elucidate the effects of novel sustainable feed additives in the feed of farmed salmon (HoloFood Trial D - fermented seaweed open water-dose response)

Testing the effect of seaweed as a novel cost-efficient feed source for Atlantic salmon feed. Fermentation of novel raw materials for fish feed is a new practice with little prior experience of direct relevance to aquaculture and fish farming. In Trial D, an alternative marine compound is include...

2023-06-13 | MTBLS6733 | MetaboLights

Barrack2014 - Calcium/cell cycle coupling - Cyclin D dependent ATP release

Barrack2014 - Calcium/cell cycle coupling - Cyclin D dependent ATP release This model is designed based on the hypothesis that cytoplasmic calcium accelerates entry into S phase of the cell cycle and/or acts to recruit otherwise quiescents cells onto the cell cycle. The model descr...

2024-09-02 | BIOMD0000000508 | BioModels

Factors associated with D-dimer levels in HIV-infected individuals.

Not available

S-EPMC3953205 | biostudies-literature

Early life vitamin D depletion alters the postnatal response to skeletal loading in growing and mature bone.

Not available

S-EPMC5784894 | biostudies-literature

2,4-D and dicamba resistance mechanisms in wild radish: subtle, complex and population specific?

Not available

S-EPMC6153477 | biostudies-literature

Vitamin D binding protein variants associate with asthma susceptibility in the Chinese Han population.

Not available

S-EPMC3163515 | biostudies-literature

An ultraviolet-driven rescue pathway for oxidative stress to eye lens protein human gamma-D crystallin.

Not available

S-EPMC11006947 | biostudies-literature

Thomas Meurig Owen

Not available

S-EPMC1124955 | biostudies-literature

Barrack2014 - Calcium/cell cycle coupling - Rs dependent ATP release

Barrack2014 - Calcium/cell cycle coupling - Rs dependent ATP release This model is designed based on the hypothesis that cytoplasmic calcium accelerates entry into S phase of the cell cycle and/or acts to recruit otherwise quiescents cells onto the cell cycle. The model describes t...

2024-09-02 | BIOMD0000000509 | BioModels

Implication of N-Methyl-d-Aspartate Receptor in Homocysteine-Induced Age-Related Macular Degeneration.

Not available

S-EPMC8431693 | biostudies-literature

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