Owen J J - OmicsDI

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Unknown (1704)
Genomics (56)
Transcriptomics (34)
Proteomics (30)
Metabolomics (22)
Models (8)
Multiomics (2)
Other (1)

Organisms

Homo sapiens (78)
Mus musculus (16)
Saccharomyces cerevisiae (4)
Arabidopsis (3)
Caenorhabditis elegans (3)
Arabidopsis thaliana (3)
Mammalia (2)
synthetic construct (2)
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mixed sample (1)
Danio rerio (1)
Neurospora crassa (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. D23580 (1)

Organisms

Homo sapiens (1)

Repository

EGA (50)
biostudies-arrayexpress (39)
pride (25)
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Cell culture (13)
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Disease

Melanoma (3)
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Not Available (1)
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Technology Type

Mass Spectrometry (25)
Mass spectrometry (14)
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Illumina 15K (8)
Bottom-up proteomics (6)
Affinity purification coupled with mass spectrometry proteomics (4)
Data-independent acquisition (4)
DiaPASEF (4)
Mass spectrometry assay (2)
NMR spectroscopy (2)
Affymetrix 6.0 (1)
Illumina (various), Illumina (Various) (1)
Illumina 1.2M, Affymetrix 6.0 (1)
Illumina HiSeq 2000 (1)
Illumina_670k - Illuminus, Affymetrix 6.0, Illumina 1.2M (1)
All-ion fragmentation (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (11)
Illumina HiSeq 2500 (4)
Liquid Chromatography MS - negative - reverse phase (4)
Q Exactive (3)
Illumina HiSeq 4000 (2)
NextSeq 500 (2)
Q Exactive UHMR (2)
SYNAPT G2-Si (2)
TSQ Altis (2)
Xevo G2 XS Tof (2)
Xevo G2-XS QTof (2)
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NextSeq 550 (1)
Illumina NovaSeq 6000 (1)
Q Exactive Plus (1)
Instrument (1)
Orbitrap Fusion Lumos (1)
Atmospheric Pressure Matrix Assisted Laser Desorption/Ionization orbitrap MS - Positive (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - positive - hilic (1)
MS Imaging - Atmospheric Pressure Matrix Assisted Laser Desorption/Ionization orbitrap MS - Positive (1)
Tandem Gas Chromatography MS - positive (1)

Publication Date

2024 (16)
2023 (15)
2021 (9)
2026 (8)
2014 (6)
2019 (5)
2022 (4)
2013 (4)
2010 (4)
2008 (4)
2017 (3)
2015 (3)
2012 (3)
2007 (3)
2025 (3)
2009 (2)
2006 (2)
2020 (2)
2018 (1)
2011 (1)
2003 (1)

UNIPROT ID/AC

P11802 (2)
P24385 (2)
P24864 (2)
P24941 (2)
Q01094 (2)
Q08999 (2)
Q940U6 (2)
Q9XFM0 (2)
A0ELI5 (2)
A0EQY3 (2)
A0JNY3 (2)
A0JNY7 (2)
A0MNP4 (2)
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A1A596 (2)
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A1L0V6 (2)
A1L347 (2)
A1L366 (2)
P49677 (1)
Q570C0 (1)
Q9LPW7 (1)
Q9LQT8 (1)
Q9LW29 (1)
Q9MAA7 (1)
Q9ZR12 (1)

ENSEMBL ID

ENSMUSG00000021039 (2)
ENSMUSG00000027651 (2)
ENSMUSG00000093896 (2)
ENSMUSG00000094075 (2)
ENSMUSG00000094797 (2)
ENSMUSG00000094930 (2)
ENSMUSG00000095442 (2)
ENSMUSG00000096410 (2)
ENSMUSG00000098557 (2)
ENSMUSP00000141097 (2)
ENSMUSP00000141637 (2)
ENSMUSG00000072849 (1)
ENSMUSG00000076508 (1)
ENSMUSG00000076532 (1)
ENSMUSG00000076586 (1)
ENSMUSG00000076695 (1)
ENSMUSG00000076731 (1)
ENSMUSG00000093894 (1)
ENSMUSG00000094356 (1)
ENSMUSG00000094502 (1)
ENSMUSG00000094509 (1)
ENSMUSG00000094546 (1)
ENSMUSG00000094652 (1)
ENSMUSG00000094689 (1)
ENSMUSG00000095210 (1)
ENSMUSG00000095416 (1)
ENSMUSG00000095753 (1)
ENSMUSG00000096326 (1)
ENSMUSG00000098814 (1)
ENSMUSG00000103290 (1)

CHEBI ID

CHEBI:16359 (3)
CHEBI:16704 (3)
CHEBI:16811 (3)
CHEBI:17750 (3)
CHEBI:28865 (3)
CHEBI:35038 (3)
CHEBI:73024 (3)
CHEBI:15422 (2)
CHEBI:16541 (2)
CHEBI:16595 (2)
CHEBI:29108 (2)
CHEBI:47867 (2)
CHEBI:139138 (2)
CHEBI:143745 (2)
CHEBI:143757 (2)
CHEBI:15354 (2)
CHEBI:15355 (2)
CHEBI:15428 (2)
CHEBI:15676 (2)
CHEBI:15727 (2)
CHEBI:15891 (2)
CHEBI:16335 (2)
CHEBI:16709 (2)
CHEBI:16919 (2)
CHEBI:173703 (2)
CHEBI:29590 (1)
CHEBI:29605 (1)
CHEBI:30088 (1)
CHEBI:32902 (1)
CHEBI:32906 (1)

Metabolite Name

Cholic acid (3)
Choline (3)
Glycine (3)
Tris(2-butoxyethyl) phosphate (3)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
9(10)-EpOME (2)
Acetic acid (2)
Acetylcarnitine (2)
Acetylcholine (2)
Anserine (2)
Betaine (2)
Carnosine (2)
Citric acid (2)
Citrulline (2)
Creatine (2)
Creatinine (2)
Elaidic acid (2)
Formic acid (2)
Glutamine (2)
Histamine (2)
Histidine (2)
Isoleucine (2)
L-Alanine (2)
L-Carnitine (2)
L-Glutamic acid (2)
L-Glutamine (2)
L-Histidine (2)

First Public Date

2021 (1)

Modelling Approach

Ordinary differential equation model (8)

Lab affiliation

Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (7)
University of Dundee, School of Life Sciences (4)
Centre for Gene Regulation and Expression School of Life Sciences, University of Dundee, Dundee (2)
ARC Centre of Excellence in Plant Energy Biology, School of Molecular Sciences, The University of Western Australia, Australia and Harry Perkins Institute of Medical Research, Perth, Western Australia, Australia (1)
Cancer Research UK Manchester Institute (1)
Centre for Gene Regulation and Expression School of Life Sciences, University of Dundee (1)
Centre for Gene Regulation and Expression School of Life Sciences, University of Dundee, Dundee, United Kingdom (1)
Department of Biomedical Engineering, 3303 SW Bond Avenue, Center for Health and Healing CH13B, Oregon Health & Science University, Portland, OR 97239, USA (1)
Division of Molecular and Cellular Function School of Biological Sciences The University of Manchester M139PT Manchester UK (1)
Institute of Biochemistry Medical Faculty University of Cologne Germany (1)
Lund University Sölvegatan 35 223 62 – Lund Sweden (1)
Professor of Chemical Biology, Imperial College London Satellite Group Leader, Francis Crick Institute Founder & SAB, Myricx Pharma Ltd Room 301B, Molecular Sciences Research Hub, White City Campus 82 Wood Lane, London W12 0BZ, UK Tel.: 020759 + Ext. 43752 or 45821 (group) http://www.imperial.ac.uk/tate-group/ (1)
Professor of Microbial Pathogenesis Institute of Integrative Biology Room 308, Biosciences Building, University of Liverpool Crown Street, Liverpool L69 7ZB, United Kingdom (1)
Section of Investigative Medicine Imperial College London (1)
Single Cell Omics Advanced Core Facility - Hungarian Centre of Excellence for Molecular Medicine Budapesti út 9. | 6728 | Szeged | Hungary (1)

IsPrivate

False (8)

Study type

Transcription profiling by array (19)
RNA-seq of coding RNA (9)
ChIP-seq (3)
Comparative genomic hybridization by array (2)
Transcription profiling by tiling array (1)
RNAi profiling by array (1)
ChIP-chip by array (1)
DNA-seq (1)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2023 (201)
2022 (199)
2021 (178)
2024 (153)
2025 (149)
2020 (117)
2019 (112)
2018 (101)
2015 (80)
2017 (78)
2016 (65)
2014 (55)
2013 (47)
2012 (45)
2011 (34)
2009 (29)
2026 (26)
2010 (22)
2008 (20)
2007 (9)
2006 (9)
2003 (4)
2000 (3)
2005 (2)
2004 (1)
1999 (1)
1998 (1)
1991 (1)

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Runx+ HSPC, kdrl+ endothelial, and negative cells sorted from DMSO- or Lycorine-treated 3 dpf zebrafish embryos

The zebrafish is a powerful model for the study of hematopoietic stem and progenitor cells (HSPC). We have developed a novel HSPC-specific transgenic line (Runx1+23:GFP). We have used this line in time-lapse live imaging studies to track the migration of HSPC during development. We have also perform...

ORGANISM(S): Danio rerio

2015-01-15 | E-GEOD-56015 | biostudies-arrayexpress

Owen1998 - Tumour treatment model

Owen1998 - tumour treatment model This model is described in the article: Modelling the macrophage invasion of tumours: effects on growth and composition. Owen MR, Sherratt JA. IMA J Math Appl Med Biol 1998 Jun; 15(2): 165-185 Abstract: Even in the early stages of the...

2024-09-02 | BIOMD0000000650 | BioModels

Owen1998 - tumour growth model

Owen1998 - tumour growth model Deterministic model for the early, avascular growth of a tumour, concentrating on the inhibitory effect of macrophages. This model is described in the article: Modelling the macrophage invasion of tumours: effects on growth and composition. Owen MR, ...

2024-09-02 | BIOMD0000000670 | BioModels

Host Tree and Geography Induce Metabolic Shifts in the Epiphytic Liverwort Radula complanata

Bryophytes are prolific producers of unique, specialized metabolites that are not found in other plants. As many of these unique natural products are potentially interesting, for example, pharmacological use, variations in the production regarding ecological or environmental conditions have not ofte...

2026-01-29 | MTBLS6740 | MetaboLights

Self-Reported Early and Later Life Weight and the Risk of All-Cause Mortality in Older Adults.

Not available

S-EPMC10353754 | biostudies-literature

Plasma 1-carbon metabolites and academic achievement in 15-yr-old adolescents.

Not available

S-EPMC4799502 | biostudies-literature

Participation in Physical Play and Leisure in Children With Motor Impairments: Mixed-Methods Study to Generate Evidence for Developing an Intervention.

Not available

S-EPMC4595811 | biostudies-literature

Ex-Vivo Equine Cartilage Explant Osteoarthritis Model - A Metabolomics and Proteomics Study

Osteoarthritis (OA) is an age-related degenerative musculoskeletal disease characterised by loss of articular cartilage, synovitis, abnormal bone proliferation and subchondral bone sclerosis. Underlying OA pathogenesis is yet to be fully elucidated with no OA specific biomarkers in clinical use. Ex-...

2020-09-30 | MTBLS1495 | MetaboLights

Macrophage FABP4 is required for neutrophil recruitment and bacterial clearance in Pseudomonas aeruginosa pneumonia.

Not available

S-EPMC6988858 | biostudies-literature

Structures of the procapsid and mature virion of enterovirus 71 strain 1095.

Not available

S-EPMC3700288 | biostudies-literature

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