P. sylvestris - OmicsDI

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Transcriptomics (294)
Unknown (224)
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Organisms

Drosophila melanogaster (185)
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Escherichia coli O127:H6 str. E2348/69 (1)
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Organisms

fungus metagenome (6)
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soil metagenome (1)

Repository

biostudies-arrayexpress (453)
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Tissue

Pollen (3)
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Disease

Normal (1)

Technology Type

Mass spectrometry (21)
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Instrument Platform

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CryoStor® CS10 Freezing Medium (Cat. No. 100-1061; StemCell Technologies) (1)
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2009 (6)
2020 (5)
2012 (5)
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2004 (4)
2007 (2)
2006 (2)
2005 (1)
2018 (1)

UNIPROT ID/AC

5811.TGME49_002070 (1)
5811.TGME49_002130 (1)
5811.TGME49_002690 (1)
5811.TGME49_003210 (1)
5811.TGME49_003530 (1)
5811.TGME49_004050 (1)
5811.TGME49_004530 (1)
5811.TGME49_005130 (1)
5811.TGME49_005250 (1)
5811.TGME49_008350 (1)
5811.TGME49_008590 (1)
5811.TGME49_008730 (1)
5811.TGME49_009060 (1)
5811.TGME49_009100 (1)
5811.TGME49_009760 (1)
5811.TGME49_009870 (1)
5811.TGME49_012150 (1)
5811.TGME49_012890 (1)
5811.TGME49_013790 (1)
5811.TGME49_014080 (1)
5811.TGME49_014620 (1)
5811.TGME49_014950 (1)
5811.TGME49_015420 (1)
5811.TGME49_015710 (1)
5811.TGME49_015780 (1)
5811.TGME49_018260 (1)
5811.TGME49_018530 (1)
5811.TGME49_018830 (1)
5811.TGME49_019440 (1)
5811.TGME49_019860 (1)

CHEBI ID

CHEBI:16335 (5)
CHEBI:7916 (5)
CHEBI:16704 (5)
CHEBI:27897 (5)
CHEBI:18089 (5)
CHEBI:75632 (4)
CHEBI:16566 (4)
CHEBI:72665 (4)
CHEBI:17521 (4)
CHEBI:17385 (4)
CHEBI:16424 (4)
CHEBI:17306 (4)
CHEBI:46961 (4)
CHEBI:17015 (4)
CHEBI:16027 (4)
CHEBI:17509 (4)
CHEBI:17533 (4)
CHEBI:16750 (4)
CHEBI:28197 (4)
CHEBI:17895 (4)
CHEBI:17295 (4)
CHEBI:70976 (4)
CHEBI:30769 (4)
CHEBI:137495 (3)
CHEBI:75643 (3)
CHEBI:15421 (3)
CHEBI:18101 (3)
CHEBI:74793 (3)
CHEBI:30200 (3)
CHEBI:17716 (3)

Metabolite Name

Phloretin (5)
Guanosine (5)
(S)-9-Hydroxy-10-undecenoic acid (4)
Octadecanedioic acid (4)
12,13-DiHOME (4)
Guanine (4)
9,10-DiHOME (4)
Undecanedioic acid (4)
Tetradecanedioic acid (4)
N-Acetyl-L-phenylalanine (4)
Azelaic acid (4)
L-Tryptophan (4)
L-Serine (4)
Sucrose (4)
Creatine (4)
Isoquercitrin (3)
Procyanidin B3 (3)
Procyanidin B1 (3)
Procyanidin B2 (3)
21-Deoxycortisol (3)
Ethyl (S)-3-hydroxybutyrate glucoside (3)
Lipoxin A4 (3)
Xi-7-Octen-2-ol (3)
Sphingosine (3)
5-(2-Hydroxyethyl)-4-methylthiazole (3)
L-Citrulline (3)
9,10,13-TriHOME (3)
N-Acetylneuraminic Acid (3)
Myricitrin (3)
Benzoic acid (3)

First Public Date

2017 (7)
2019 (6)
2023 (5)
2026 (4)
2020 (4)
2025 (3)
2024 (3)
2013 (2)
2015 (1)
2014 (1)

Study type

ChIP-seq (152)
RNA-seq of coding RNA (112)
Transcription profiling by array (68)
RNA-seq of coding RNA from single cells (21)
RNA-seq of total RNA (20)
ChIP-chip by tiling array (9)
CUT&RUN (8)
RIP-seq (7)
DNA-seq (7)
RNA-seq of non coding RNA (7)
Single nucleus RNA sequencing (6)
ATAC-seq (5)
Comparative genomic hybridization by array (4)
Unknown experiment type (3)
Spatial transcriptomics by high-throughput sequencing (3)
Hi-C (3)
ChIP-chip by array (2)
MicroRNA profiling by high throughput sequencing (2)
4C (2)
Exome sequencing (2)
Methylation profiling by array (2)
RNA-seq of non coding RNA from single cells (1)
Animal - High-throughput sequencing (1)
Capture-C (1)
Transcription profiling by RT-PCR (1)
Bisulfite-seq (1)
Ribo-seq (1)
ScATAC-seq (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2025 (121)
2011 (80)
2026 (76)
2010 (60)
2013 (53)
2022 (35)
2024 (31)
2021 (30)
2023 (28)
2016 (26)
2020 (24)
2015 (21)
2014 (19)
2017 (17)
2012 (15)
2018 (11)
2019 (10)
2009 (6)
2004 (4)
2007 (3)
2006 (3)
2008 (2)
2005 (1)
2000 (1)

Lab affiliation

UFIEC, Chronic Disease Programme, Functional Proteomics Unit, Instituto de Salud Carlos III (3)
Department of Biophysics, Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science, Palacký University, Šlechtitelů 27, 783 71 Olomouc, Czech Republic (1)
IBCH RAS (1)
Institute of Molecular Plant Biology, Department of Biology, ETH Zurich, Switzerland (1)
Iowa State University - Department of Biochemistry Biophysics and Molecular Biology (1)
Max-Planck-Institut für Molekulare Pflanzenphysiologie Wisenschaftspark Golm Am Mühlenberg 1 14476 Potsdam, Germany (1)

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Pinus sylvestris

Pinus sylvestris is an important coniferous tree

PRJNA38553 | ENA

Scots pine (Pinus sylvestris) differentially interacts with Cenococcum geophilum and other simultaneously inoculated mycorrhizal (ECM) fungi

To identify specific gene networks induced in host roots by C. geophilum, we inoculated seedlings of Scots pine simultaneously with C. geophilum and either Suillus granulatus or Rhizopogon roseolus, two common ECM fungi associated to pines. We then measured the differential expression of Scots pine ...

ORGANISM(S): Pinus sylvestris

2016-08-01 | E-GEOD-80549 | biostudies-arrayexpress

Pinus sylvestris provenance climate differentiates roots, bacterial communities, and their relationships

Pinus sylvestris provenance and bacterial communities

PRJEB96950 | ENA

Testing the masking hypothesis using P. sylvestris as a model

PRJNA937910 | ENA

fungus metagenome

Metatranscriptome of P Pinus sylvestris inoculated with Cenococcum geophilum - Myc Cg1.58_Pinus_latecontact_2R metatranscriptome

PRJNA404388 | ENA

fungus metagenome

Metatranscriptome of P Pinus sylvestris inoculated with Cenococcum geophilum - Myc Cg1.58_Pinus_latecontact_3R metatranscriptome