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Transcriptomics
(21976)
Genomics
(2216)
Proteomics
(974)
Unknown
(613)
Metabolomics
(559)
Other
(66)
Multiomics
(5)
Methylation profiling
(4)
Models
(3)
Organisms
Mus musculus
(14885)
Homo sapiens
(3895)
Drosophila melanogaster
(611)
Arabidopsis thaliana
(606)
Rattus norvegicus
(378)
Saccharomyces cerevisiae
(364)
Caenorhabditis elegans
(304)
Danio rerio
(124)
Escherichia coli
(101)
Schizosaccharomyces pombe
(100)
Bos taurus
(89)
Thermus thermophilus HB8
(71)
Mycobacterium tuberculosis
(71)
Gallus gallus
(70)
Candida albicans
(61)
Sus scrofa
(60)
Staphylococcus aureus
(60)
Escherichia coli str. K-12 substr. MG1655
(42)
Streptomyces coelicolor
(37)
Apis mellifera
(34)
Streptococcus pneumoniae
(34)
Salmonella enterica subsp. enterica serovar Typhimurium
(33)
Rhizobium leguminosarum
(30)
Salmo salar
(30)
Zea mays
(29)
Triticum aestivum
(29)
Campylobacter jejuni
(28)
Escherichia coli K-12
(27)
Oryza sativa
(23)
Mammalia
(1)
Organisms
Mus musculus
(179)
Homo sapiens
(43)
Rattus norvegicus
(29)
hot springs metagenome
(10)
soil metagenome
(6)
tidal flat metagenome
(4)
groundwater metagenome
(4)
Sus scrofa
(3)
Drosophila melanogaster
(2)
Saccharomyces cerevisiae
(2)
Mamestra configurata nucleopolyhedrovirus A
(1)
Cloacimonetes bacterium SCGC AAA252-P10
(1)
Firmicutes bacterium JGI 0000119-P10
(1)
Curvularia pseudointermedia
(1)
Neptunomonas qingdaonensis
(1)
Gammaproteobacteria bacterium SCGC AB-663-P10
(1)
Firmicutes bacterium SCGC AB-670-P10
(1)
Cystoviridae
(1)
Phaeobacter inhibens
(1)
Cutibacterium acnes P10
(1)
Betaproteobacteria bacterium
(1)
Autographa californica multiple nucleopolyhedrovirus
(1)
Streptomyces sp. P10-4
(1)
Bradyrhizobium yuanmingense
(1)
Pasteuria ramosa
(1)
Borna disease virus
(1)
Trichoplusia ni
(1)
Stenotrophomonas rhizophila
(1)
Mustela putorius furo
(1)
Campylobacter jejuni subsp. jejuni
(1)
Repository
biostudies-arrayexpress
(23672)
MetaboLights
(559)
MassIVE
(531)
ENA
(361)
jPOST
(211)
geo
(150)
EGA
(124)
iProX
(119)
pride
(64)
GPMDB
(49)
EVA
(11)
PAXDB
(6)
BioModels
(1)
Cell Collective
(1)
FAIRDOMHub
(1)
NODE
(1)
Tissue
Cell culture
(8)
B cell
(4)
Brain
(4)
Epithelial cell
(4)
Kidney
(3)
Melanocyte
(3)
Colon
(2)
Early embryonic cell
(2)
Fibroblast
(2)
Periodontal ligament
(2)
Whole body
(2)
Liver
(1)
Blood platelet
(1)
Blood serum
(1)
Bone marrow
(1)
Breast epithelium
(1)
Cell suspension culture
(1)
Cerebral cortex
(1)
Connective tissue cell
(1)
Corpus callosum
(1)
Egg
(1)
Embryo
(1)
Embryonic stem cell
(1)
Epididymis
(1)
Epiphyseal growth plate
(1)
Feces
(1)
Hepatocyte
(1)
Hypertrophic chondrocyte
(1)
Keratinocyte
(1)
Leukocyte
(1)
Disease
Normal
(103)
Breast cancer
(11)
Lymphoma
(10)
Melanoma
(10)
Colon cancer
(10)
Prostate cancer
(8)
Reference
(7)
Colorectal cancer
(5)
Cancer
(4)
Osteosarcoma
(4)
Carcinoma
(4)
Adenocarcinoma
(4)
Neuroblastoma
(4)
Breast adenocarcinoma
(4)
Primary tumor
(3)
Rheumatoid arthritis
(3)
Leukemia
(3)
Pre-diabetic
(3)
Tumor
(3)
Pre diabetic
(3)
Glioblastoma
(3)
Hepatocellular carcinoma
(3)
Breast carcinoma
(3)
Healthy
(3)
Alopecia
(2)
Asthma
(2)
Colorectal Carcinoma
(2)
Mitochondrial complex I deficiency
(2)
Apparently healthy
(2)
Infiltrating ductal carcinoma
(2)
Technology Type
Mass spectrometry
(320)
Mass spectrometry assay
(214)
Mass Spectrometry
(64)
Shotgun proteomics
(31)
NMR spectroscopy
(26)
Bottom-up proteomics
(21)
Data-dependent acquisition
(14)
Gel-based experiment
(5)
Data-independent acquisition
(4)
ILLUMINA, Illumina HiSeq 2000
(3)
Illumina HiSeq 2000
(3)
NMR spectroscopy assay
(2)
Affinity purification coupled with mass spectrometry proteomics
(2)
DiaPASEF
(2)
Glycoproteomics
(2)
Metaproteomics
(2)
Combined on identical nucleotide universal identifier, Illumina HumanWG-6 version 3 or Illumina HumanHT-12 expression bead chip
(1)
ILLUMINA, NextSeq 500
(1)
Illumina HiSeq 4000, ILLUMINA
(1)
Illumina HiSeq 2500, ILLUMINA
(1)
ILLUMINA, Illumina HiSeq 2500
(1)
Illumina HiSeq 2500 (ILLUMINA)
(1)
Illumina HiSeq 2000, Affymetrix SNP 6.0
(1)
Illumina HiSeq 2000, Illumina MiSeq
(1)
AB SOLiD 4 System
(1)
All-ion fragmentation
(1)
SWATH MS
(1)
Instrument Platform
Illumina NovaSeq 6000
(816)
NextSeq 500
(520)
Illumina HiSeq 2500
(439)
Illumina HiSeq 4000
(376)
Illumina HiSeq 2000
(348)
NextSeq 550
(150)
Illumina MiSeq
(104)
NextSeq 2000
(99)
Illumina NovaSeq X
(78)
Illumina HiSeq 1500
(45)
Illumina HiSeq 3000
(39)
Illumina Genome Analyzer II
(33)
GenePix 4000B [Axon Instruments]
(32)
Illumina Genome Analyzer IIx
(31)
Scanning hardware
(30)
Axon GenePix 4000B scanning hardware
(30)
HiSeq X Ten
(26)
Axon- GenePix4000B
(24)
DNBSEQ-G400
(24)
GenePix 4000A [Axon Instruments]
(23)
Axon GenePix 4000A scanning hardware
(21)
NA
(17)
N/A
(17)
G2565BA DNA microarray scanner [Agilent]
(16)
Ion Torrent Proton
(15)
Illumina HiSeq 1000
(14)
BGISEQ-500
(14)
DNBSEQ-T7
(13)
Agilent 2100 Bioanalyzer
(12)
418 [Affymetrix]
(12)
Publication Date
2013
(2769)
2014
(2697)
2010
(2437)
2015
(2402)
2012
(2358)
2011
(2073)
2016
(1544)
2008
(1428)
2009
(1063)
2007
(708)
2025
(658)
2026
(643)
2023
(579)
2022
(576)
2024
(571)
2021
(537)
2020
(453)
2019
(397)
2018
(375)
2017
(346)
2006
(269)
2005
(257)
2004
(122)
2003
(24)
2002
(1)
2027
(1)
UNIPROT ID/AC
1433B_MOUSE
(5)
1433E_MOUSE
(5)
1433Z_MOUSE
(5)
2AAA_MOUSE
(5)
3HIDH_MOUSE
(5)
4F2_MOUSE
(5)
6PGD_MOUSE
(5)
6PGL_MOUSE
(5)
AACS_MOUSE
(5)
AATC_MOUSE
(5)
ABHEB_MOUSE
(5)
ACAD9_MOUSE
(5)
ACADM_MOUSE
(5)
ACBP_MOUSE
(5)
ACON_MOUSE
(5)
ACSL1_MOUSE
(5)
ACTN1_MOUSE
(5)
ACTS_MOUSE
(5)
ACTZ_MOUSE
(5)
ADT2_MOUSE
(5)
AHSA1_MOUSE
(5)
AIFM1_MOUSE
(5)
AIMP1_MOUSE
(5)
AIMP2_MOUSE
(5)
AK1A1_MOUSE
(5)
AL1L1_MOUSE
(5)
AL7A1_MOUSE
(5)
ALDH2_MOUSE
(5)
ALDOA_MOUSE
(5)
ALDR_MOUSE
(5)
CHEBI ID
CHEBI:15891
(80)
CHEBI:16919
(77)
CHEBI:16704
(76)
CHEBI:30769
(75)
CHEBI:15354
(73)
CHEBI:17596
(73)
CHEBI:17368
(73)
CHEBI:17568
(69)
CHEBI:16737
(69)
CHEBI:16708
(67)
CHEBI:15428
(67)
CHEBI:15741
(67)
CHEBI:18012
(65)
CHEBI:32816
(65)
CHEBI:16750
(63)
CHEBI:17562
(61)
CHEBI:16811
(60)
CHEBI:16335
(60)
CHEBI:28044
(58)
CHEBI:17154
(58)
CHEBI:30915
(58)
CHEBI:18186
(57)
CHEBI:6650
(57)
CHEBI:18257
(56)
CHEBI:7916
(56)
CHEBI:27897
(55)
CHEBI:16027
(54)
CHEBI:28300
(53)
CHEBI:27266
(52)
CHEBI:63836
(1)
Metabolite Name
Creatine
(110)
Taurine
(108)
Inosine
(107)
Creatinine
(104)
Hypoxanthine
(103)
Uracil
(100)
Adenine
(100)
Uridine
(96)
Cytidine
(85)
Xanthine
(85)
Choline
(84)
Guanosine
(84)
Adenosine
(82)
L-Tyrosine
(74)
Cytosine
(73)
Betaine
(71)
Guanine
(71)
Citrulline
(70)
Thymine
(69)
Thymidine
(69)
L-Phenylalanine
(69)
Xanthosine
(66)
Pantothenic acid
(65)
Riboflavin
(65)
Citric acid
(64)
Uric acid
(64)
Ornithine
(63)
Deoxycholic acid
(62)
L-Histidine
(61)
Taurocholic acid
(60)
First Public Date
2014
(50)
2025
(46)
2024
(38)
2023
(32)
2022
(28)
2020
(28)
2026
(25)
2017
(24)
2021
(22)
2019
(21)
2018
(19)
2015
(14)
2016
(8)
2013
(6)
Modelling Approach
Ordinary differential equation model
(1)
Lab affiliation
1School of Natural Sciences, Macquarie University, Sydney, NSW, Australia 2Institute for Glyco-core Research (iGCORE), Nagoya University, Aichi, Japan
(3)
Department of Chemistry and Biochemistry University of Colorado, Boulder Boulder, CO 80309
(2)
Institute for Microbiology, University of Greifswald, Felix-Hausdorff-Straße 8, 17489 Greifswald, Germany
(2)
Institute of Microbiology, Department of Microbial Proteomics, University of Greifswald, Germany
(2)
School of Natural Sciences, Macquarie University, Sydney, Australia
(2)
Adult Cancer Program, Faculty of Medicine, Lowy Cancer Research Centre, University of New South Wales Sydney, NSW, Australia
(1)
Arts and Sciences Distinguished Professor of Biology Duke University
(1)
BIOCEV group, Department of Zoology, Faculty of Science, Charles University in Prague, Průmyslová 595, 252 42 Vestec
(1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technical University Munich Gregor-Mendel-Straße 4 85354 Freising
(1)
Biosciences Department, KEMRI-Wellcome Trust Research Programme, Centre for Geographic Medicine Research - Coast, Kilifi, Kenya
(1)
CSIR-Institute of Genomics and Integrative Biology, Mathura Road, New Delhi 110025, India Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, Uttar Pradesh 201002, India
(1)
Calpain Project Department of Advanced Science for Biomolecules Igakuken (Tokyo Metropolitan Institute of Medical Science) 2-1-6 Kamikitazawa, Setagaya-ku Tokyo 156-8506, Japan
(1)
Center for Neuroscience Research Children's National Medical Center 111 Michigan Avenue N.W., M7631 Washington, DC 20010-2970 Phone: +1-202-476-4279 Fax: +1-202-476-4988 e-mail: MTorii@childrensnational.org
(1)
Centre for Cancer Cell & Molecular Biology Barts Cancer Institute, Queen Mary University of London Charterhouse Square London EC1M 6BQ U.K.
(1)
Chair of Proteomics and Bioanalytics, School of Life Sciences, Technical University of Munich, Germany
(1)
Chemistry & Chemical Biology, Harvard University, 12 Oxford Street, Cambridge, MA 02138 and Department of Microbiology, Harvard Medical School, 4 Blackfan Circle, Boston, MA 02115
(1)
College of Veterinary Medicine and Animal Science, University of São Paulo, Pirassununga, SP, Brazil.
(1)
Department of Biological Chemistry and Molecular Pharmacology, Blavatnik Institute, Harvard Medical School, Boston, MA, USA.
(1)
Department of Biomedical Sciences, University of Sassari, Sassari, Italy
(1)
Department of Biomolecular Medicine, Ghent University, Ghent, Belgium VIB Center for Medical Biotechnology, VIB, Ghent, Belgium
(1)
Department of Chemistry, University of North Carolina at Chapel Hill
(1)
Department of Diagnosis and Surgery, School of Dentistry at Araraquara, Sao Paulo State University - UNESP, Araraquara, São Paulo, Brazil
(1)
Department of Diagnosis and Surgery, School of Dentistry at Araraquara, Sao Paulo State University - UNESP, Araraquara, São Paulo, Brazil.
(1)
Department of Opthalmology, Boston Children's Hospital, Harvard Medical School
(1)
Dept of Chemistry, Umeå University, Umeå, Sweden.
(1)
Director & Chair Institute of Human Genetics University Hospital Cologne Kerpener Str. 34 50931 Cologne Germany
(1)
Director, Proteome Center Rostock, University of Rostock, Germany
(1)
Drug Discovery Moffitt Cancer Center Tampa, FL, USA
(1)
EDyP
(1)
Epithelial Systems Biology Laboratory, National Heart, Lung, and Blood Institute, NIH, Bethesda, MD, USA
(1)
Tags
pathogen
(10)
pathogen:virus
(5)
pathogen:bacterium
(5)
xref:PubMed:41124261
(3)
xref:PubMed:27326930
(3)
xref:PubMed:18978773
(3)
xref:PubMed:34534448
(3)
xref:PubMed:39329733
(2)
xref:PubMed:35776116
(2)
xref:PubMed:34552240
(2)
xref:PubMed:39190625
(2)
xref:PubMed:38180318
(2)
xref:PubMed:37350382
(2)
xref:PubMed:37867192
(2)
xref:PubMed:18493317
(2)
xref:PubMed:41389204
(2)
xref:PubMed:41193846
(2)
xref:PubMed:39695111
(2)
xref:ArrayExpress:E-MTAB-3417
(1)
xref:ArrayExpress:E-ERAD-482
(1)
xref:PubMed:30133484
(1)
xref:PubMed:35995560
(1)
xref:PubMed:35451126
(1)
xref:PubMed:35405946
(1)
xref:PubMed:37084144
(1)
xref:PubMed:33806574
(1)
xref:PubMed:34209226
(1)
xref:PubMed:36170840
(1)
xref:PubMed:41272245
(1)
xref:PubMed:41857098
(1)
IsPrivate
False
(1)
Classification
viruses
(5)
bacteria
(5)
Study type
Transcription profiling by array
(14838)
RNA-seq of coding RNA
(2910)
ChIP-seq
(1397)
ChIP-chip by tiling array
(630)
RNA-seq of coding RNA from single cells
(578)
Comparative genomic hybridization by array
(377)
Other
(256)
Unknown experiment type
(248)
RNA-seq of non coding RNA
(247)
Methylation profiling by array
(223)
Methylation profiling by high throughput sequencing
(212)
ChIP-chip by array
(197)
Animal - High-throughput sequencing
(141)
RNA-seq of total RNA
(133)
Transcription profiling by RT-PCR
(118)
Transcription profiling by tiling array
(110)
DNA-seq
(103)
MicroRNA profiling by array
(86)
ATAC-seq
(79)
Cell line - High-throughput sequencing
(61)
High-throughput sequencing
(53)
Proteomic profiling by array
(53)
Animal - One-color microarray
(43)
Transcription profiling by SAGE
(42)
Single nucleus RNA sequencing
(41)
Genotyping by array
(35)
RIP-seq
(29)
Animal - Single-cell sequencing
(27)
CUT&RUN
(25)
Ribo-seq
(24)
Release Date
2013
(2771)
2014
(2701)
2010
(2440)
2015
(2417)
2012
(2362)
2011
(2081)
2016
(1543)
2008
(1432)
2009
(1062)
2007
(710)
2021
(487)
2022
(481)
2023
(446)
2025
(441)
2020
(410)
2026
(393)
2019
(368)
2024
(363)
2018
(358)
2017
(320)
2006
(273)
2005
(262)
2004
(122)
2003
(28)
2002
(5)
2000
(3)
1999
(2)
1998
(2)
2001
(1)
1997
(1)
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Cutibacterium acnes P10
Cutibacterium acnes P10 Genome sequencing and assembly
PRJNA192442
|
ENA
Cite
Pasteuria ramosa strain:P10
Pasteuria ramosa Genome sequencing and assembly ( isolate P10)
PRJNA1251303
|
ENA
Cite
Bacillus subtilis strain:P10-2
Bacillus subtilis strain:P10-2 Genome sequencing
PRJNA1370638
|
ENA
Cite
Streptomyces sp. P10-4
Streptomyces sp. P10-4 Genome sequencing
PRJNA1260757
|
ENA
Cite
Bradyrhizobium yuanmingense strain:P10 130
Bradyrhizobium yuanmingense strain:P10 130 Genome sequencing and assembly
PRJNA513056
|
ENA
Cite
Neptunomonas qingdaonensis strain:P10-2-4
Neptunomonas qingdaonensis strain:P10-2-4 Genome sequencing and assembly
PRJNA295945
|
ENA
Cite
Firmicutes bacterium JGI 0000119-P10
Firmicutes bacterium JGI 0000119-P10
PRJNA182429
|
ENA
Cite
Cloacimonetes bacterium SCGC AAA252-P10
candidate division KSB1 bacterium SCGC AAA252-P10
PRJNA192472
|
ENA
Cite
Brevibacterium antiquum P10
Draft genome sequence of Brevibacterium antiquum P10
PRJEB19831
|
ENA
Cite
Curvularia pseudointermedia strain:P10
Curvularia pseudointermedia strain:P10 Genome sequencing
PRJNA1440934
|
ENA
Cite
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