P16 - OmicsDI

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Unknown (2437)
Transcriptomics (1361)
Genomics (541)
Proteomics (48)
Methylation profiling (14)
Other (12)
Metabolomics (11)
Models (2)
Clinical (1)

Organisms

Homo sapiens (707)
Mus musculus (570)
Rattus norvegicus (36)
Arabidopsis thaliana (27)
Saccharomyces cerevisiae (19)
Streptococcus pneumoniae D39 (16)
Drosophila melanogaster (11)
Oryza sativa (6)
Canis lupus familiaris (6)
Danio rerio (6)
Bos taurus (5)
Gallus gallus (5)
Sus scrofa (5)
Zea mays (4)
Schizosaccharomyces pombe (4)
Macaca mulatta (3)
Gossypium hirsutum (2)
Fragaria x ananassa (2)
Corynebacterium glutamicum (2)
Nicotiana benthamiana (2)
Porphyromonas gingivalis (2)
Anopheles gambiae (2)
mixed sample (2)
Glycine max (2)
Ovis aries (2)
Caenorhabditis elegans (2)
Triticum aestivum (2)
Pseudomonas aeruginosa (2)
Escherichia coli (2)
Arthrostemma ciliatum (1)

Organisms

Homo sapiens (159)
Mus musculus (141)
marine metagenome (15)
Rattus norvegicus (6)
groundwater metagenome (5)
Arabidopsis thaliana (3)
Dokdonia sp. Dokd-P16 (2)
tidal flat metagenome (2)
Drosophila melanogaster (2)
unidentified (2)
Epicoccum nigrum P16 (1)
Alkalicoccobacillus porphyridii (1)
Pseudomonas syringae pv. aptata (1)
Streptococcus ilei (1)
Firmicutes bacterium SCGC AC-310-P16 (1)
Chloroflexi bacterium SCGC AC-335-P16 (1)
Amycolatopsis sp. JGI 0001011-P16 (1)
Pythium sp. B7052-1 (1)
Paenibacillus sp. P16 (1)
Borna disease virus (1)
Norovirus sp. (1)
Herbiconiux wuyangfengii (1)
compost metagenome (1)
Mus (1)
Aureobasidium melanogenum (1)
Oryza sativa (1)
Microbiota (1)
freshwater metagenome (1)
Pseudomonas aeruginosa (1)
Klebsiella pneumoniae (1)

Repository

biostudies-arrayexpress (1220)
ENA (409)
geo (251)
EGA (45)
pride (25)
MassIVE (18)
MetabolomicsWorkbench (8)
jPOST (5)
MetaboLights (3)
BioModels (2)
iProX (2)
EVA (1)
GPMDB (1)

Tissue

Blood (5)
Cell culture (5)
Blood serum (3)
Epithelial cell (3)
Melanocyte (2)
Neurons (1)
Kidney (1)
Cerebrospinal fluid (1)
Blood (1)
Brain (1)
Breast (1)
Cell suspension culture (1)
Early embryonic cell (1)
Fibroblast (1)
Head and neck squamous cell carcinoma cell (1)
Hematopoietic progenitor cell differentiation (1)
Mouth (1)
Oropharynx (1)
T cell (1)
Tongue (1)
Tonsil (1)
Type II pneumocyte (1)

Disease

Breast cancer (3)
Cervical cancer (2)
Normal (2)
Myalgic encephalomyelitis/chronic fatigue syndrome (2)
Oropharynx cancer (2)
HPV positive (1)
Lymphoblastic leukemia (1)
High grade glioblastoma (1)
Primary effusion lymphoma (PEL) (1)
Normal renal cortex (1)
Acute lymphocytic leukemia (1)
Locally advanced breast carcinoma (LABC; non-inflammatory) (1)
Post-stasis (1)
Gliosarcoma (1)
Schizophrenia (1)
"hepatocellular adenoma" (1)
Cancer cell line pool (1)
Leukemia (1)
Adenoid cystic carcinoma (1)
Glioblastoma multiforme (1)
Embryonal carcinoma (1)
Carcinoma (1)
Central nervous system cancer (1)
Colorectal Neoplasms (1)
Not Available (1)
Angina (1)
Stress (1)
Alzheimers disease (1)
Cancer (1)
Acute myeloid leukemia (1)

Technology Type

Mass Spectrometry (33)
Shotgun proteomics (10)
ESI (8)
Affinity purification coupled with mass spectrometry proteomics (4)
MSE (4)
Illumina HiSeq 2000 (3)
Bottom-up proteomics (3)
Data-dependent acquisition (3)
Top-down proteomics (3)
Illumina HiSeq 2500, ILLUMINA (2)
NMR spectroscopy (2)
SWATH MS (2)
Illumina HiSeq 2500, Illumina HiSeq 2000 (ILLUMINA), Illumina HiSeq 2000, Illumina (1)
ILLUMINA, NextSeq 500 (1)
ILLUMINA, Illumina HiSeq 2500, HiSeq X Ten (1)
Illumina_450K (1)
ILLUMINA, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, ILLUMINA (1)
Mass spectrometry assay (1)
Data-independent acquisition (1)
DiaPASEF (1)
Gel-based experiment (1)
HDMSE (1)

Instrument Platform

Illumina HiSeq 2500 (13)
Illumina NovaSeq 6000 (12)
NextSeq 500 (7)
Illumina HiSeq 2000 (6)
Illumina HiSeq 4000 (6)
NextSeq 2000 (5)
Illumina NovaSeq X (4)
Q Exactive (4)
N/A (3)
BeadBug Benchtop homogenizer (2)
GenePix 4000B [Axon Instruments] (2)
Illumina Genome Analyzer II (2)
Illumina HiSeq 1500 (2)
Orbitrap Exploris 480 (2)
Molecular Biology laboratory (1)
Mammalian cell culture laboratory (1)
FastPrep-24 5G bead beater, Qubit Fluorometer (1)
12 well TC-treated plate, LETs buffer, dry ice (1)
Nanostring GeoMx spatial profiler (1)
GenePix 4000B Microarray Scanner (Molecular Devices). (1)
DNA Microarray Scanner (Model G2505C, Agilent Technologies) (1)
454 GS FLX Titanium (1)
Agilent DNA Microarray Scanner (1)
ScanArray [PerkinElmer] (1)
Scanning hardware (1)
NA (1)
FACS Aria (1)
HiSeq X Ten (1)
Illumina MiSeq (1)
Instrument (1)

Publication Date

2013 (204)
2015 (180)
2014 (161)
2010 (149)
2012 (147)
2011 (125)
2008 (79)
2026 (59)
2016 (55)
2009 (52)
2024 (43)
2025 (39)
2023 (39)
2022 (39)
2007 (33)
2020 (26)
2021 (25)
2019 (20)
2018 (20)
2017 (16)
2005 (9)
2004 (3)
2006 (2)
2002 (1)

CHEBI ID

CHEBI:15347 (2)
CHEBI:16977 (2)
CHEBI:9349 (2)
CHEBI:15366 (2)
CHEBI:16737 (2)
CHEBI:30769 (2)
CHEBI:16628 (1)
CHEBI:32636 (1)
CHEBI:42111 (1)
CHEBI:17925 (1)
CHEBI:16113 (1)
CHEBI:73688 (1)
CHEBI:15903 (1)
CHEBI:30751 (1)
CHEBI:17170 (1)
CHEBI:16236 (1)
CHEBI:15428 (1)
CHEBI:16000 (1)
CHEBI:15344 (1)
CHEBI:27266 (1)
CHEBI:17750 (1)
CHEBI:46195 (1)
CHEBI:422 (1)
CHEBI:16857 (1)
CHEBI:30772 (1)
CHEBI:32816 (1)
CHEBI:16199 (1)
CHEBI:16414 (1)
CHEBI:15724 (1)
CHEBI:16643 (1)

Metabolite Name

HMDB0003070 (1)
HMDB0000719 (1)
HMDB0000092 (1)
HMDB0000023 (1)
HMDB0000232 (1)
HMDB0000821 (1)
HMDB0000622 (1)
HMDB0013302 (1)
HMDB0002271 (1)
HMDB0006248 (1)
HMDB0000725 (1)
HMDB0006469 (1)
HMDB0000222 (1)
HMDB0000791 (1)
HMDB0000756 (1)
HMDB0013128 (1)
HMDB0000736 (1)
HMDB0000824 (1)
HMDB0000201 (1)
HMDB0000062 (1)
HMDB0013622 (1)
HMDB0000207 (1)
HMDB0002226 (1)
HMDB0001976 (1)
HMDB0006528 (1)
HMDB0002183 (1)
HMDB0002925 (1)
HMDB0001043 (1)
HMDB0001999 (1)
HMDB0006270 (1)

First Public Date

2026 (62)
2025 (54)
2024 (44)
2023 (39)
2014 (37)
2021 (32)
2022 (31)
2020 (22)
2016 (20)
2019 (15)
2017 (15)
2018 (14)
2015 (13)
2013 (11)

Study status

Not provided (1)

Lab affiliation

Washington University in St. Louis (4)
1 Department of Otorhinolaryngology - Head and Neck Surgery, University of Helsinki and HUS Helsinki University Hospital, P.O.Box 263, FI-00029 HUS, Helsinki, Finland 2 Department of Biosciences and Nutrition, Karolinska Institutet, SE-171 76, Stockholm, Sweden. 3 Research Program in Systems Oncology, Faculty of Medicine, University of Helsinki, Helsinki, Finland. (2)
Biomolecular Mass Spectrometry and Proteomics Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences Utrecht University Padualaan 8 3584 CH Utrecht The Netherlands (1)
Biotech Research and Innovation Centre, University of Copenhagen, Ole Maaløes Vej 5, Copenhagen 2200, Denmark (1)
DIVAS, University of Milan (1)
DZNE Munich, Neuroproteomics, Feodor-Lynen Str. 17, 81377 Munich, Germany (1)
Department of Otorhinolaryngology – Head and Neck Surgery, University of Helsinki and Helsinki University Hospital, Helsinki 00130, Finland and Department of Biosciences and Nutrition, Karolinska Institutet, Stockholm 11382, Sweden (1)
Department of Pharmacology & Chemical Biology, University of Pittsburgh School of Medicine,UPMC Hillman Cancer Center, Pittsburgh, PA (1)
Director, Advanced Clinical Biosystems Research Institute (1)
Director, Proteome Center Rostock, University of Rostock, Germany (1)
Drug Discovery Moffitt Cancer Center Tampa, FL, USA (1)
Emory University School of Medicine, Department of Pathology and Laboratory Medicine, Pathology Advanced Translational Research Unit (1)
Graduate School of Pharmaceutical Sciences, The University of Tokyo, Tokyo, Japan (1)
ICO Cancer Center INSERM U1232 (1)
Institute of Pathology, School of Medicine, Technical University of Munich, Munich, Germany Institute of Pathology, University Hospital Heidelberg, Heidelberg, Germany (1)
Institute of Pharmacology and Toxicology, University of Veterinary Medicine Vienna, A-1210 Vienna, Austria. (1)
King's College London School of Cardiovascular and Metabolic Medicine & Sciences James Black Centre 125 Coldharbour Lane, London, SE5 9NU (1)
Lab head of mass spectrometry (1)
Max Planck Institute for Terrestrial Microbiology Karl-von-Frisch Str. 10 35043 Marburg Germany (1)
Normandie Univ, UNIROUEN, Inserm, Laboratory of Neuronal and Neuroendocrine Communication and Differentiation, Neuropeptides, Neuronal death and Cell plasticity team, 76000 Rouen, France (1)
University of Edinburgh, Institute of Genetics and Molecular Medicine, Edinburgh, Scotland, United Kingdom, EH4 2XR (1)

IsPrivate

False (2)

Classification

bacteria (3)
viruses (2)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (816)
RNA-seq of coding RNA (119)
Comparative genomic hybridization by array (69)
ChIP-seq (41)
Unknown experiment type (31)
RNA-seq of non coding RNA (27)
Methylation profiling by array (25)
Genotyping by array (17)
Methylation profiling by high throughput sequencing (13)
ChIP-chip by tiling array (10)
Other (10)
Transcription profiling by RT-PCR (6)
DNA-seq (6)
Transcription profiling by SAGE (4)
Transcription profiling by tiling array (4)
Animal - High-throughput sequencing (3)
MicroRNA profiling by array (3)
Human - One-color microarray (2)
ChIP-chip by array (2)
RNA-seq of coding RNA from single cells (2)
RNA-seq of total RNA (2)
Transcription profiling by MPSS (1)
Differential (1)
Plant - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
RNAi profiling by array (1)
CLIP-seq (1)
Spatial transcriptomics by high-throughput sequencing (1)
Interventional (1)

Release Date

2015 (287)
2013 (271)
2014 (261)
2023 (250)
2022 (243)
2021 (228)
2025 (224)
2012 (209)
2024 (196)
2010 (193)
2020 (177)
2011 (172)
2016 (171)
2019 (140)
2018 (133)
2017 (122)
2008 (107)
2009 (86)
2007 (53)
2026 (47)
2005 (23)
2006 (18)
2004 (10)
2003 (9)
2001 (8)
2002 (7)
2000 (5)
1999 (4)
1998 (2)
1997 (1)

Location

France (1)

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Paenibacillus sp. P16

Paenibacillus sp. P16 Genome sequencing

PRJNA1281537 | ENA

Gene expression profile of p16-induced senescence in normal human diploid fibroblasts.

Transcriptional profiling of p16-induced senescent human diploid fibroblasts compared with proliferating cells. TIG-3 ER-p16 cells (primary normal human diploid fibroblasts expressing a 4-hydroxytamoxifen(4-OHT) regulatable form of human p16) were cultured for 7 days with or without 4-OHT. Total RN...

ORGANISM(S): Homo sapiens

2014-04-10 | E-GEOD-49863 | biostudies-arrayexpress

Expression data from RCAS PDGFB/Nestin tv-A glioma cells within Ptprd+/+p16-/- (n=2), Ptprd+/-p16-/- (n=2), and Ptrpd-/-p16-/- (n=3) mice.

PTPRD is a tumor suppressor of glioma that is frequently co-deleted with CDKN2A/p16. We show that Ptprd and p16 cooperate to promote gliomagenesis in the RCAS PDGFB / Nestin tv-A glioma mouse model. We found unique gene expression changes within tumor cells of Ptprd+/-p16-/- vs. Ptprd+/+p16-/- and P...

ORGANISM(S): Mus musculus

2014-06-02 | E-GEOD-55061 | biostudies-arrayexpress

Dokdonia sp. Dokd-P16

Dokdonia sp. Dokd-P16 Genome sequencing and assembly

PRJNA450898 | ENA

Transcription profiling of liver from mice expressing or not expressing the p16INK4a gene

Effect of transgenic expression of p16 on liver

ORGANISM(S): Mus musculus

2007-12-31 | E-MEXP-1264 | biostudies-arrayexpress

Epicoccum nigrum P16

Epicoccum nigrum P16 Genome sequencing and assembly

PRJNA77841 | ENA

Induction of apoptotic processes in Capan-1 pancreatic carcinoma cells by restoration of p16INK4a expression

Early invasive growth and metastasis are features of pancreatic cancer that rely on resistance to anoikis, an apoptosis program activated upon loss of adequate matrix anchorage. Re-expression of the tumor suppressor p16 reversed anoikis resistance of pancreatic cancer cells. This conversion to an an...

ORGANISM(S): Homo sapiens

2010-08-01 | E-GEOD-22334 | biostudies-arrayexpress

Alkalicoccobacillus porphyridii strain:P16(2019)

Alkalicoccobacillus porphyridii strain:P16(2019) Genome sequencing and assembly

PRJNA554508 | ENA

Streptococcus ilei strain:I-P16

Genome sequence of Streptococcus sp. I-P16, isolated from human small intestinal fluid

PRJNA214028 | ENA

Amycolatopsis sp. JGI 0001011-P16

PRJNA187218 | ENA