P18 - OmicsDI

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Transcriptomics (773)
Unknown (280)
Genomics (204)
Proteomics (65)
Metabolomics (28)
Models (4)
Methylation profiling (1)
Other (1)

Organisms

Sus scrofa (328)
Mus musculus (224)
Homo sapiens (171)
Saccharomyces cerevisiae (13)
Rattus norvegicus (12)
Arabidopsis thaliana (9)
Drosophila melanogaster (7)
Staphylococcus aureus (5)
Caenorhabditis elegans (5)
Bos taurus (5)
Sus scrofa domesticus (5)
Actinobacillus pleuropneumoniae (4)
Escherichia coli (4)
Macaca mulatta (3)
Listeria monocytogenes (3)
Vitis vinifera (3)
Actinobacillus pleuropneumoniae serovar 1 str. 4074 (2)
Bacteria (2)
Macaca nemestrina (2)
Malus domestica (2)
Nicotiana benthamiana (2)
Bacillus subtilis (2)
Mesocricetus auratus (2)
Escherichia coli K-12 (2)
Escherichia coli str. K-12 substr. MG1655 (2)
Danio rerio (2)
Steinernema carpocapsae (1)
Oreochromis mossambicus (1)
Solanum melongena (1)
Streptococcus suis P1/7 (1)

Organisms

Mus musculus (54)
Homo sapiens (33)
groundwater metagenome (6)
marine metagenome (3)
tidal flat metagenome (2)
Rattus norvegicus (2)
Bos taurus (2)
Nitrospirae bacterium SCGC AC-310-P18 (1)
Phaeobacter piscinae (1)
Porphyromonadaceae bacterium SCGC AD-285-P18 (1)
Butyrivibrio proteoclasticus (1)
Deltaproteobacteria bacterium (1)
aquifer metagenome (1)
Herbiconiux liangxiaofengii (1)
Capsicum annuum Conoides Group (1)
Lysobacter soli (1)
Klebsiella pneumoniae subsp. pneumoniae (1)
Pasteurella multocida (1)
Penaeus monodon (1)
hot springs metagenome (1)
Bacillus toyonensis (1)
aquatic metagenome (1)
Sus scrofa (1)
Escherichia coli (1)
Pseudomonas aeruginosa (1)
Gallus gallus (1)
synthetic construct (1)
soil metagenome (1)

Repository

biostudies-arrayexpress (762)
ENA (138)
geo (60)
MassIVE (23)
MetaboLights (20)
EVA (11)
PeptideAtlas (11)
pride (11)
EGA (9)
jPOST (9)
MetabolomicsWorkbench (8)
iProX (6)
PAXDB (5)
BioModels (4)

Tissue

Blood (5)
Brain (3)
Cell culture (2)
Neurons (1)
Kidney (1)
Cerebrospinal fluid (1)
Bone marrow (1)
Dendritic cell (1)
Early embryonic cell (1)
Epithelial cell (1)
Hematopoietic progenitor cell differentiation (1)
Kidney (1)
Leg bone (1)
Myelin sheath (1)
Neural retina (1)
Oligodendrocyte (1)
Optic nerve (1)
Spinal cord (1)
Type II pneumocyte (1)

Disease

Mitochondrial complex I deficiency (2)
Normal (2)
Myalgic encephalomyelitis/chronic fatigue syndrome (2)
Neuroendocrine tumor (1)
HPV positive (1)
Rett syndrome (1)
Pseudorabies virus infected (1)
Down syndrome, acute megakaryoblastic leukaemia (1)
Spinal muscular atrophy (1)
Chondroblastoma (1)
Kaposi's sarcoma (1)
Parkinson's disease (1)
Breast carcinoma (invasive ductal) (1)
Familial adenomatous polyposis (FAP) (1)
Spinal muscular atrophy (NCI Metathesaurus C0026847) has DiseaseStaging postsymptomatic (1)
Exposed_Seronegative (1)
Embryonal carcinoma (1)
Carcinoma (1)
Control (1)
Cervical cancer (1)
Angina (1)
Stress (1)
Alzheimers disease (1)
Cancer (1)
Acute myeloid leukemia (1)
Head and neck squamous cell carcinoma (1)
Lung cancer (1)
Neuroblastoma (1)
Pediatric osteosarcoma (1)

Technology Type

Mass Spectrometry (19)
Mass spectrometry (12)
ESI (8)
Shotgun proteomics (6)
Mass spectrometry assay (5)
Affinity purification coupled with mass spectrometry proteomics (4)
NMR spectroscopy (3)
Data-independent acquisition (3)
Illumina HiSeq 4000, ILLUMINA (1)
Illumina HiSeq 2000 (1)
Bottom-up proteomics (1)
HDMSE (1)
MSE (1)

Instrument Platform

Illumina HiSeq 2500 (18)
Illumina HiSeq 2000 (17)
Illumina NovaSeq 6000 (14)
Illumina HiSeq 4000 (11)
NextSeq 500 (6)
G2565BA DNA microarray scanner [Agilent] (3)
NextSeq 2000 (3)
Illumina HiScanSQ (3)
ScanArray Express HT [PerkinElmer] (2)
GenePix 4000B [Axon Instruments] (2)
Illumina Genome Analyzer II (2)
NextSeq 550 (2)
Macbook Pro 2018 (1)
BRB-seq tool and pipeline (1)
NucleoSpin RNA kit (Macherey-Nagel) (1)
Gilson Minipuls 3 (1)
Nanodrop 2000c spectrophotometer (1)
Thermal cycler, Agilent BioAnalyzer 2100 (1)
Microcentrifuge, vortex spinner, pipettes, -80C freezer (1)
Zeiss Stereomicroscope, standard lab plasticware (1)
CeMM HPC (1)
Lightwave (1)
Truseq RNA v2 (1)
Agilent DNA Microarray Scanner (1)
Ion Torrent S5 (1)
Affymetrix GeneChip Scanner 3000 7G (1)
Axon- GenePix4000B (1)
Scanning hardware (1)
Illumina NovaSeq X (1)
N/a (1)

Publication Date

2013 (93)
2012 (93)
2010 (87)
2015 (81)
2014 (81)
2011 (68)
2016 (57)
2008 (50)
2009 (47)
2026 (42)
2025 (27)
2024 (23)
2019 (20)
2021 (18)
2023 (17)
2007 (16)
2018 (15)
2022 (14)
2020 (13)
2017 (13)
2006 (10)
2005 (9)
2004 (8)
2003 (2)
2002 (1)

UNIPROT ID/AC

P27824 (4)
Q9U6Y8 (4)
P42212 (4)
Q13158 (4)
P25445 (4)
P48023 (4)
P55957 (4)
Q14790 (4)
O15519 (4)
547559.Nmag_1187 (2)
6PGD_HALVD (2)
AGL10_HALVD (2)
AGL11_HALVD (2)
AGL12_HALVD (2)
AGL14_HALVD (2)
AGL5_HALVD (2)
AGL7_HALVD (2)
AGLB_HALVD (2)
AGLF_HALVD (2)
AGLM_HALVD (2)
AGLP_HALVD (2)
ALF_HALVD (2)
ANTRB_HALVD (2)
ARCS_HALVD (2)
ATGT_HALVD (2)
C5MK48_NATMM (2)
CAS3_HALVD (2)
CAS5_HALVD (2)
CAS6_HALVD (2)
CAS7_HALVD (2)

ENSEMBL ID

ENSG00000064012 (4)

CHEBI ID

CHEBI:15741 (6)
CHEBI:25017 (5)
CHEBI:15428 (5)
CHEBI:6650 (5)
CHEBI:15891 (5)
CHEBI:18012 (5)
CHEBI:50406 (4)
CHEBI:17822 (4)
CHEBI:25094 (4)
CHEBI:18237 (4)
CHEBI:27570 (4)
CHEBI:18186 (4)
CHEBI:26986 (4)
CHEBI:16811 (4)
CHEBI:28300 (4)
CHEBI:18257 (4)
CHEBI:16708 (4)
CHEBI:16000 (4)
CHEBI:28044 (4)
CHEBI:16335 (4)
CHEBI:16010 (4)
CHEBI:21547 (4)
CHEBI:16015 (4)
CHEBI:16027 (4)
CHEBI:44897 (4)
CHEBI:30915 (4)
CHEBI:16737 (4)
CHEBI:16919 (4)
CHEBI:27897 (4)
CHEBI:17368 (4)

Metabolite Name

Creatine (5)
Lactic acid (4)
Phenylalanine (4)
Creatinine (4)
Glycerophosphocholine (4)
Anserine (3)
Histidine (3)
Leucine (3)
Hyocholic acid (3)
Leucine (3)
Glycine (3)
Betaine (3)
Propionylcarnitine (3)
Pyridoxine (3)
Methionine (3)
Choline (3)
Citric acid (3)
3-Hydroxybutyric acid (3)
Tyrosine (3)
Adenosine (3)
Succinate (3)
L-Glutamine (3)
Isoleucine (3)
L-Serine (3)
Guanosine (3)
Tryptophan (3)
L-Tyrosine (3)
Inosine (3)
Hypoxanthine (3)
5-hydroxymethyl-6-methyluracil (2)

First Public Date

2014 (21)
2025 (17)
2024 (16)
2021 (13)
2018 (11)
2023 (10)
2017 (9)
2020 (8)
2019 (8)
2026 (7)
2016 (5)
2015 (5)
2022 (4)
2013 (4)

Modelling Approach

Ordinary differential equation model (4)

Lab affiliation

Department of Biochemistry, Post Graduate Institute of Medical Education and Research, Chandigarh, India (1)
Department of Chemistry and Bioscience, Aalborg University, Denmark (1)
Department of Life Sciences, Pohang University of Science and Technology, Pohang, South Korea (1)
Department of Neurobiology, Northwestern University, Evanston, IL, USA (1)
Drug Discovery Moffitt Cancer Center Tampa, FL, USA (1)
Head of Discovery Proteomics Facility (1)
Institute of Molecular Health Sciences, Department of Biology, ETH Zurich (1)
Institute of Pharmacology and Toxicology, University of Veterinary Medicine Vienna, A-1210 Vienna, Austria. (1)
Neuroproteomics Group Department of Molecular Neurobiology Max Planck Institute for Multidisciplinary Sciences Hermann-Rein-Str. 3 37075 Goettingen Germany (1)
Target Discovery Institute, NDMRB, University of Oxford (1)
The Hong Kong Polytechnic University (1)

IsPrivate

False (4)

Classification

bacteria (4)

Study type

Transcription profiling by array (497)
RNA-seq of coding RNA (99)
ChIP-seq (32)
Comparative genomic hybridization by array (20)
RNA-seq of non coding RNA (18)
Unknown experiment type (15)
RNA-seq of coding RNA from single cells (10)
Methylation profiling by high throughput sequencing (8)
Transcription profiling by tiling array (7)
RNA-seq of total RNA (7)
Transcription profiling by SAGE (6)
Methylation profiling by array (6)
Other (5)
ChIP-chip by tiling array (4)
MicroRNA profiling by array (4)
Animal - High-throughput sequencing (3)
Genotyping by array (3)
ChIP-chip by array (2)
Transcription profiling by RT-PCR (2)
MicroRNA profiling by high throughput sequencing (2)
Bisulfite-seq (2)
DNA-seq (2)
Baseline (1)
Human - High-throughput sequencing (1)
Plant - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
CLIP-seq (1)
ATAC-seq (1)
CUT&RUN (1)

Release Date

2012 (102)
2013 (98)
2015 (93)
2010 (92)
2014 (90)
2011 (71)
2016 (69)
2008 (59)
2009 (56)
2025 (37)
2019 (32)
2021 (29)
2018 (28)
2022 (27)
2020 (25)
2017 (24)
2024 (22)
2023 (21)
2007 (19)
2006 (14)
2005 (10)
2026 (6)
2004 (6)
2003 (4)
2002 (2)
2001 (2)
1998 (2)
2000 (1)
1997 (1)

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Lysobacter soli strain:P18

Lysobacter soli strain:P18 Genome sequencing

PRJNA1177803 | ENA

Profiling of the brain endothelial transcriptional changes upon Gpr126 depletion at P18

RNA-seq experiment of WT and Gpr126iECKO mice with Gpr126 depletion at P18. Two replicates per condition.

ORGANISM(S): Mus musculus

2024-08-12 | E-MTAB-13914 | biostudies-arrayexpress

Transcription profiling of mouse visual cortex from wild type animals sacrificed at P18 after mononuclear enucleation

Wild-type (C57Bl6) mice underwent monocular enucleation at P14 and were sacrificed 4 days later at P18. Bilateral (non-deprived and deprived) visual cortex was dissected from 1-mm thick coronal sections, and total RNA was extracted from the tissue lysate using Trizol (Gibco-BRL). Experiment Overall ...

ORGANISM(S): Mus musculus

2008-06-13 | E-GEOD-4263 | biostudies-arrayexpress

Butyrivibrio proteoclasticus strain:p18

Butyrivibrio proteoclasticus P18 genome sequencing

PRJNA303298 | ENA

Herbiconiux liangxiaofengii strain:P18

Herbiconiux liangxiaofengii strain:P18 Genome sequencing

PRJNA1158421 | ENA

Pseudomonas aeruginosa strain:P18

Pseudomonas aeruginosa strain:P18 Genome sequencing

PRJNA1414802 | ENA

Bacillus toyonensis strain:P18