Pacheco A A - OmicsDI

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Unknown (2722)
Proteomics (35)
Transcriptomics (30)
Metabolomics (5)
Genomics (2)

Organisms

Homo sapiens (32)
Mus musculus (4)
Nicotiana benthamiana (2)
Rattus norvegicus (2)
Toxoplasma gondii GT1 (2)
Escherichia coli O55:H7 (1)
Escherichia coli O157:H7 (1)
Shigella flexneri (1)
Oryctolagus cuniculus (1)
Pseudomonas (1)
Candida albicans (1)
Carica papaya (1)
Eukaryota (1)
Komagataeibacter europaeus (1)
Leishmania mexicana (1)
Nakaseomyces glabratus (1)
Ovis aries (1)
Plasmodium berghei ANKA (1)
Plasmodium falciparum 3D7 (1)
Saccharomyces cerevisiae (1)
Sus scrofa domesticus (1)
Toxoplasma gondii (1)
Toxoplasma gondii RH-88 (1)
environmental samples (1)

Repository

biostudies-arrayexpress (31)
pride (28)
MassIVE (7)
MetaboLights (3)
GNPS (2)
ENA (1)

Tissue

Cell culture (6)
Brain (3)
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Blood cell (2)
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Monocyte (2)
Sperm (2)
Callus culture (1)
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Lung (1)
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Primary cell (1)

Disease

Avian influenza (3)
Influenza (3)
Malaria (1)
Toxoplasmosis (1)
Vulvovaginal candidiasis (1)

Technology Type

Mass Spectrometry (28)
Shotgun proteomics (8)
Bottom-up proteomics (5)
SWATH MS (5)
Data-dependent acquisition (4)
Mass spectrometry (3)
Affinity purification coupled with mass spectrometry proteomics (3)
Data-independent acquisition (3)
SRM/MRM (2)
Top-down proteomics (2)
Gel-based experiment (1)
HDMSE (1)
PAcIFIC (1)

Instrument Platform

Q Exactive (5)
Illumina NovaSeq 6000 (3)
Illumina HiSeq 2500 (2)
GenePix 4200AL (1)
Illumina HiSeq 2000 (1)
LCMS-IT-TOF (1)
LTQ Orbitrap (1)
NanoACQUITY UPLC (1)
Q-Exactive (Thermo Fisher) (1)
Q-Exactive Thermo Fisher (1)
6540 Q-TOF LC/MS (Agilent) (1)
Liquid Chromatography MS - Alternating (LC-MS (Alt)) (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2023 (14)
2026 (9)
2012 (9)
2024 (7)
2022 (5)
2019 (4)
2011 (4)
2020 (3)
2025 (3)
2015 (2)
2010 (2)
2008 (2)
2017 (2)
2016 (1)
2014 (1)
2013 (1)
2021 (1)

CHEBI ID

CHEBI:131743 (2)
CHEBI:133145 (2)
CHEBI:15570 (2)
CHEBI:15756 (2)
CHEBI:15793 (2)
CHEBI:17368 (2)
CHEBI:17509 (2)
CHEBI:17568 (2)
CHEBI:18344 (2)
CHEBI:28875 (2)
CHEBI:28997 (2)
CHEBI:30746 (2)
CHEBI:30769 (2)
CHEBI:30832 (2)
CHEBI:36313 (2)
CHEBI:46961 (2)
CHEBI:48430 (2)
CHEBI:64294 (2)
CHEBI:64563 (2)
CHEBI:67021 (2)
CHEBI:7916 (2)
CHEBI:87248 (2)
CHEBI:10070 (1)
CHEBI:10120 (1)
CHEBI:10136 (1)
CHEBI:10782 (1)
CHEBI:111517 (1)
CHEBI:1157 (1)
CHEBI:116314 (1)
CHEBI:12427 (1)

Metabolite Name

3-Hydroxyanthranilic acid (2)
7-Ketocholesterol (2)
Adipic acid (2)
Benzoic acid (2)
Citric acid (2)
Deoxyinosine (2)
Ethyl glucuronide (2)
Hypoxanthine (2)
Ketoleucine (2)
Kynurenic acid (2)
LysoPE(0:0/16:0) (2)
LysoPE(0:0/18:0) (2)
Myristic acid (2)
Palmitic acid (2)
Uracil (2)
(R)-3-Hydroxy-Octadecanoic acid (1)
(R)-3-Hydroxy-tetradecanoic acid (1)
(R)-3-Hydroxybutyric acid (1)
(S)-3-Hydroxytetradecanoyl-CoA (1)
(S)-Succinyldihydrolipoamide (1)
(ÃÂ±)-2-(1-Methylpropyl)-4,6-dinitrophenol (1)
1,3,5-Trihydroxybenzene (1)
1-(sn-Glycero-3-phospho)-1D-myo-inositol (1)
10E,12Z-Octadecadienoic acid (1)
11-Dehydrocorticosterone (1)
11-trans-Leukotriene C4 (1)
11b-Hydroxyprogesterone (1)
11beta,13-dihydrolactucopicrin (1)
12-Hydroxydodecanoic acid (1)
12-Hydroxynevirapine (1)

First Public Date

2025 (1)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (21)
RNA-seq of coding RNA (5)
Genotyping by array (2)
Transcription profiling by RT-PCR (1)
DNA-seq (1)
Methylation profiling by array (1)

Release Date

2022 (347)
2025 (342)
2021 (313)
2023 (307)
2024 (287)
2020 (218)
2019 (199)
2018 (131)
2017 (111)
2016 (90)
2015 (79)
2013 (62)
2026 (59)
2014 (54)
2012 (39)
2011 (33)
2010 (28)
2009 (15)
2008 (14)
2006 (9)
2007 (6)
2005 (4)
2003 (3)
2001 (2)
2000 (1)

Lab affiliation

Laboratory of Structural Biology and Cell Signaling Institute of Microbiology of the Czech Acad Sci Prumyslova 595 252 50 Vestec Czech Republic (2)
Associate Professor Virginia Tech (1)
Center for Neuroscience and Cell Biology – University of Coimbra (1)
Centre of Biological Engineering (CEB), University of Minho, Braga, Portugal (1)
Department of Biochemistry, University of Cambridge, United Kingdom (1)
Department of Inorganic Chemistry and Chemical Engineering, Chemical Engineering Area, Marie Curie Building (C3), Campus of Rabanales, Chemical Institute for Energy and Environment (IQUEMA), Agrifood Campus of International Excellence ceiA3, Universidad de Córdoba, Ctra. N-IV-A, Km 396, 14014, Córdoba, Spain (1)
Department of Microbiology & Molecular Medicine, Medical University Center, University of Geneva, Geneva, Switzerland (1)
Department of Microbiology and Molecular Medicine, Faculty of Medicine, University of Geneva, CH-1211 Geneva, Switzerland. (1)
Department of Microbiology and Molecular Medicine, University of Geneva, Geneva, Switzerland (1)
Dept. Cellular Molecular Pharmacology, University of California - San Francisco (UCSF), USA (1)
Dept. Cellular Molecular Pharmacology, University of San Francisco (UCSF), USA (1)
Dept. Cellular and Molecular Pharmacology, University of California - San Francisco (UCSF), USA (1)
Federal University of Ceará (UFC), Department of Animal Science (Graduate Program) and Center for Research and Drug Development (School of Medicine), Brazil (1)
Human Genome and Stem Cell Research Center, Department of Genetics and Evolutionary Biology, Biosciences Institute, Brazil (1)
Human Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY, United States (1)
Institute of Microbiology - BioCeV, Academy of Sciences of the Czech Republic (1)
Laboratório de Biotecnologia, Centro de Biociências e Biotecnologia (CBB), Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Av. Alberto Lamego, Campos dos Goytacazes, RJ, Brazil. Unidade de Biologia Integrativa, Setor de Genômica e Proteômica, UENF, Campos dos Goytacazes, RJ, Brazil. (1)
Molecular Pharmacology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY, USA. (1)
Pacific Northwest National Laboratory (1)
Pesquisadora e coordenadora da facility de espectrometria de massas - LNBio. CNPEM. (1)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (1)
Roskilde University, Department of Science and Environment, Denmark (1)
Universitat Autònoma de Barcelona (1)
University of Geneva, Department of Microbiology and Molecular Medicine (1)
University of Geneva, Department of Molecular Microbiology, Geneva, Switzerland (1)
Virginia Tech School of Neuroscience Life Sciences Building (LS 1) Room 213, Lab 212 Blacksburg VA, 24061 (1)
CNC - Center for Neuroscience and Cell Biology (1)

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Plastome Mutations and Recombination Events in Barley Chloroplast Mutator Seedlings.

Not available

S-EPMC4885237 | biostudies-literature

Pre-clinical evaluation of a divalent liposomal vaccine to control invasive candidiasis.

Not available

S-EPMC12166040 | biostudies-literature

Unravelling moisture-induced CO₂ chemisorption mechanisms in amine-modified sorbents at the molecular scale.

Not available

S-EPMC8459418 | biostudies-literature

A Highly Conserved gp120 Inner Domain Residue Modulates Env Conformation and Trimer Stability.

Not available

S-EPMC5021418 | biostudies-literature

Epidemiological profile of people with spinal cord injury in Ecuador: A population-based design and cohort profile.

Not available

S-EPMC12885019 | biostudies-literature

Structural and temporal patterns of the first global trading market.

Not available

S-EPMC6124087 | biostudies-literature

A new electoral bottom-up model of institutional governance.

Not available

S-EPMC11785748 | biostudies-literature

Sperm mRNA transcripts are indicators of sub-chronic low dose testicular injury in the Fischer 344 rat

Current human reproductive risk assessment methods rely on semen and serum hormone analyses, which are not easily comparable to the histopathological endpoints and mating studies used in animal testing. Because of these limitations, there is a need to develop universal evaluations that reliably refl...

ORGANISM(S): Rattus norvegicus

2012-09-01 | E-GEOD-34641 | biostudies-arrayexpress

Oral Delivery of Avocado Peel Extract Using Albumin Nanocarriers to Modulate Cholesterol Absorption

Not available

S-EPMC12389412 | biostudies-literature

Transcript profiling of Lymphangioleiomyomatosis (LAM) nodules in Human Patients

Lymphangioleiomyomatosis (LAM) is characterized by cystic lung destruction caused by smooth, muscle-like LAM cells which have mutations in the tumor suppressor genes Tuberous Sclerosis Complex (TSC) 1 or 2, and the capacity to metastasize. Since chemokines and their receptors function in chemotaxis ...

ORGANISM(S): Homo sapiens

2008-12-30 | E-GEOD-12027 | biostudies-arrayexpress

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2794 Results

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