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TranscriptomicsTranscription profiling of time series of C.elegans mutants and wild type
This series of samples comprises multiple early embryonic time courses for C. elegans. Time courses consisting of 10 time points each for 4 different genotypes are included: wild-type (strain N2 grown on E. coli strain OP50), pie-1(zu154) (progeny of homozygous mutant mothers [Unc] of strain JJ532 g...
ORGANISM(S): Caenorhabditis elegans 
2007-07-31 | E-GEOD-2180 | biostudies-arrayexpress
GenomicsMoorena producens PAL-8-15-08-1
Moorea producens PAL 15AUG08-1 Genome sequencing and assembly
PRJNA345358 | ENA
ProteomicsSoDA-PAL Protein Profiling Proteomics of Sorgoleone Catabolizing Microbial Isolate Acinetobacter pittii SO1
Photoaffinity probe-based protein labeling of microbial isolate Acinetobacter pittii SO1 (NCBITAXON:48296), isolated from the sorghum rhizosphere that can utilize sorgoleone as a sole carbon source in order to identify proteins that bind sorgoleone. Photoaffinity labeling of A. pittii lysates using ...
ORGANISM(S): Acinetobacter Pittii (ncbitaxon:48296) 
2023-05-18 | MSV000091986 | MassIVE
TranscriptomicsPoly(A)-tail profiling reveals an embryonic switch in translational control
Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths have impeded greater understanding of poly(A)-tail function. Here we describe poly(A)-tail length profiling by sequencing (PAL-seq) and apply it to measu...
ORGANISM(S): Arabidopsis thaliana 
2014-01-29 | E-GEOD-52809 | biostudies-arrayexpress
ProteomicsMass spectrometry data for PAL-catalyzed peptide cyclization and affibody–peptide ligation
This dataset contains mass spectrometry measurements acquired to verify peptide products generated by a peptide asparaginyl ligase (PAL)-catalyzed reaction, including (i) peptide substrate cyclization and hydrolysis side product formation, and (ii) protein–peptide ligation. For cyclization, the line...
ORGANISM(S): Escherichia coli 
2026-08-24 | PXD075203 | Pride
Transpeptidation Affibody Peptide cyclization Bioconjugation Intact mass spectrometry Peptide asparaginyl ligase 
TranscriptomicsmRNA Poly(A)-tail Changes Specified by Deadenylation Broadly Reshape Translation in Drosophila Oocytes and Early Embryos
Because maturing oocytes and early embryos lack transcription, posttranscriptional regulatory processes must control their development. To better understand this control, we profiled translational efficiencies and poly(A)-tail lengths throughout Drosophila oocyte maturation and early embryonic deve...
ORGANISM(S): Drosophila melanogaster 
2016-08-08 | E-GEOD-83616 | biostudies-arrayexpress
GenomicsProvidencia alcalifaciens PAL-2
Human Microbiome Project (HMP) Reference Genome
PRJNA181048 | ENA
GenomicsProvidencia alcalifaciens PAL-3
Human Microbiome Project (HMP) Reference Genome
PRJNA181049 | ENA
GenomicsProvidencia alcalifaciens PAL-1
Human Microbiome Project (HMP) Reference Genome
PRJNA181047 | ENA
GenomicsGluconacetobacter diazotrophicus PA1 5 strain:PAl 5
Nitrogen-fixing plant symbiont
PRJNA21071 | ENA
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