Palmer S S - OmicsDI

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Unknown (3496)
Genomics (51)
Transcriptomics (49)
Proteomics (45)
Metabolomics (21)
Genomic (5)
Models (2)

Organisms

Homo sapiens (94)
Mus musculus (12)
Yersinia pestis (4)
Pseudomonas aeruginosa (3)
Arabidopsis thaliana (3)
Danio rerio (2)
Rattus norvegicus (2)
Amaranthus palmeri (2)
Panicum virgatum (2)
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Bacteria (1)
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Organisms

Amaranthus palmeri (3)
marine metagenome (3)
Belgica antarctica (1)
Homo sapiens (1)

Repository

biostudies-arrayexpress (51)
pride (42)
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Disease

Neuroblastoma (4)
Diabetes mellitus (1)
Integrated HPV16 only (1)
Squamous cell carcinoma has accession C0007137 in DiseaseStateDatabase NCI_Thesaurus (1)
T-cell acute lymphoblastic leukemia (1)
Head and neck squamous cell carcinoma (1)
3-methylglutaconic aciduria type 9 (1)
Breast cancer (1)
Disease free (1)
Legionellosis (1)
Legionnaires' disease (1)
Lung cancer (1)
Lymphoma (1)
Multiple myeloma (1)
Myelodysplastic syndrome (1)
Non-small cell lung carcinoma (1)
Plantar fascial fibromatosis (1)
Pontiac fever (1)
Septic shock (1)

Technology Type

Mass Spectrometry (42)
Shotgun proteomics (22)
Mass spectrometry (17)
Bottom-up proteomics (12)
Data-independent acquisition (6)
Data-dependent acquisition (5)
Mass spectrometry assay (3)
Affinity purification coupled with mass spectrometry proteomics (2)
SRM/MRM (2)
Affymetrix 6.0 (1)
Affymetrix 6.0, Illumina_670k - Illuminus, Illumina 1.2M (1)
Illumina 1.2M, Affymetrix 6.0 (1)
Illumina 1.2M, Affymetrix 6.0, Affymetrix 6.0 - CHIAMO (1)
Illumina 1.2M, Illumina 610K Quad, Affymetrix 6.0 (1)
Illumina HumanExome-12v1_A-GenCall, zCall, GenoSNP, - Illuminus (1)
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Gel-based experiment (1)
Olink affinity proteomics (1)
SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (5)
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Q Exactive (3)
MS Imaging - (3)
GenePix 4000B [Axon Instruments] (2)
Illumina HiSeq 2500 (2)
Illumina NovaSeq 6000 (2)
Gas Chromatography MS - positive (2)
MoFlo Legacy cell sorter (Beckman Coulter) (1)
PC (1)
FS450 (1)
GCS3000 (1)
Illumina HiSeq 4000 (1)
Orbitrap Exploris 480 (1)
Atmospheric Pressure Matrix Assisted Laser Desorption/Ionization orbitrap MS - Positive (1)
Autoflex speed smartbeam (1)
Capillary electrophoresis MS - negative (1)
Capillary electrophoresis MS - positive (1)
Exactive (1)
LTQ Orbitrap XL ETD (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography MS - positive - reverse-phase (1)
MS Imaging - Atmospheric Pressure Matrix Assisted Laser Desorption/Ionization orbitrap MS - Positive (1)
MS Imaging - positive - direct infusion (1)
QExactive Plus (1)
Simulator (1)

Publication Date

2025 (13)
2023 (11)
2011 (11)
2021 (10)
2024 (7)
2022 (7)
2026 (7)
2020 (6)
2010 (6)
2018 (5)
2008 (5)
2017 (4)
2012 (4)
2016 (4)
2015 (3)
2014 (3)
2013 (3)
2006 (3)
2019 (3)
2007 (2)
2005 (2)
2009 (1)

UNIPROT ID/AC

O15524 (1)
P01308 (1)
P06213 (1)
P13232 (1)
P16871 (1)
P23458 (1)
P31785 (1)
P35568 (1)
P42229 (1)
P51692 (1)

CHEBI ID

CHEBI:15756 (4)
CHEBI:64433 (4)
CHEBI:134271 (3)
CHEBI:134424 (3)
CHEBI:15428 (3)
CHEBI:15741 (3)
CHEBI:15901 (3)
CHEBI:15940 (3)
CHEBI:16027 (3)
CHEBI:16610 (3)
CHEBI:16856 (3)
CHEBI:17053 (3)
CHEBI:17115 (3)
CHEBI:18344 (3)
CHEBI:28842 (3)
CHEBI:30769 (3)
CHEBI:30915 (3)
CHEBI:48131 (3)
CHEBI:64424 (3)
CHEBI:64563 (3)
CHEBI:72998 (3)
CHEBI:131145 (2)
CHEBI:132685 (2)
CHEBI:134028 (2)
CHEBI:134073 (2)
CHEBI:134074 (2)
CHEBI:134239 (2)
CHEBI:134241 (2)
CHEBI:134243 (2)
CHEBI:36080 (1)

Metabolite Name

3-(2-HYDROXYPHENYL)PROPANOATE (2)
35-aminobacteriohopane-32,33,34-triol (2)
4-Oxoproline (2)
AZELAIC ACID (2)
Adenosine (2)
Arachidonic acid (2)
Behenic acid (2)
Clupanodonyl carnitine (2)
Dodecanoic acid (2)
Glycine (2)
HEPTADECANOATE (2)
Isocitric acid (2)
L-Arginine (2)
L-Phenylalanine (2)
Pantothenate (2)
Spermidine (2)
Succinic acid (2)
Undecanoic acid (2)
(+)-Syringaresinol O-beta-D-glucoside (1)
(+)-secoisolariciresinol diglucoside (1)
(+/-)-threo-Methylnaphthidate (1)
(-)-11-hydroxy-9,10-dihydrojasmonic acid 11-beta-D-glucoside (1)
(-)-Columbianetin (1)
(-)-Epigallocatechin 3-gallate 7-glucoside 4"-glucuronide (1)
(-)-Jasmonic acid (1)
(-)-epicatechin (1)
(13Z)-octadecenoic acid (1)
(15S)-15-Hydroxy-5,8,11-cis-13-trans-eicosatetraenoate (1)
(1H-Indol-3-yl)(2,2,3,3-tetramethylcyclopropyl)methanone (1)
(1R,3R,4S,5R)-3,4-bis({[(2E)-3-(3,4-dihydroxyphenyl)prop-2-enoyl]oxy})-1,5-dihydroxycyclohexane-1-carboxylic acid (1)

IsPrivate

False (2)

First Public Date

2023 (3)
2013 (3)
2026 (1)
2025 (1)
2024 (1)
2022 (1)
2019 (1)
2014 (1)

Modelling Approach

Ordinary differential equation model (2)

Study type

Transcription profiling by array (40)
Unknown experiment type (2)
ChIP-seq (2)
RNA-seq of coding RNA (2)
Other (1)
Methylation profiling by array (1)
RNA-seq of total RNA (1)

Release Date

2021 (386)
2023 (349)
2022 (347)
2025 (344)
2024 (314)
2020 (229)
2019 (229)
2018 (214)
2016 (173)
2017 (151)
2015 (136)
2014 (120)
2013 (107)
2011 (103)
2012 (87)
2010 (67)
2026 (56)
2008 (35)
2009 (33)
2007 (16)
2006 (12)
2005 (10)
2004 (10)
2003 (6)
2002 (3)
2001 (3)
1998 (3)
2000 (2)
1999 (1)
1997 (1)

Lab affiliation

University of Nebraska - Lincoln (3)
Center for Proteomics & Metabolomics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (2)
Institute of Cancer Research (2)
Assistant Professor Department of Food Science & Technology Food Allergy Research & Resource Program University of Nebraska-Lincoln (1)
Associate Professor, Department of Biochemistry & Molecular Biology, UTMB Mass Spectrometry Director, University of Texas Medical Branch – Galveston, Texas, USA (1)
Bascom Palmer Eye Institute, Department of Ophthalmology, Miller School of Medicine at University of Miami, Miami, FL 33136, USA +1 (305) 4824103 (1)
Cancer Research UK Beatson Institute (1)
Department of Biochemistry & Pharmacology, University of Melbourne, Australia (1)
Department of Biochemistry and Pharmacology, The University of Melbourne, Parkville, 3052, Victoria, Australia (1)
Department of Biochemistry and Pharmacology, The University of Melbourne, Parkville, Victoria, 3052, Australia (1)
Department of Biochemistry, Mass Spectrometry Research Center, Vanderbilt University (1)
Department of Biological Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139, USA Singapore-MIT Alliance for Research and Technology, Antimicrobial Resistance Interdisciplinary Research Group, Campus for Research Excellence and Technological Enterprise, Singapore 138602, Singapore (1)
Department of Immunology and Microbiology, University of Colorado Anschutz Medical Campus (1)
Department of Medical Biochemistry and Cell Biology, Instititute of Biomedicine at the Sahlgrenska Academy, University of Gothenburg, SE-40530 Gothenburg, Sweden (1)
Department of Medical Biochemistry and Cell Biology, Instititute of Biomedicine at the Sahlgrenska Academy, University of Gothenburg, Sweden. (1)
Department of Medical Biochemistry and Cell Biology, Institute of Biomedicine, Sahlgrenska Academy, Gothenburg University, Sweden. (1)
Department of Medical Oncology, Dana-Farber Cancer Institute (1)
Department of Musculoskeletal and Ageing Science Institute of Life Course and Medical Sciences University of Liverpool, UK (1)
Dept. of Medical Biochemistry and Cell Biology Institute of Biomedicine The Sahlgrenska Academy at the University of Gothenburg SWEDEN (1)
EDyP (1)
Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland, and Department of Cardiothoracic Surgery, Jena University Hospital, Jena, Germany (1)
Institute of Biochemistry ETH Zuerich (1)
Institute of Biochemistry ETHZ (1)
Junior Group leader Vascular Research Centre, Medicine Faculty Goethe-Universität, Theodor-Stern-Kai 7 60590 Frankfurt am Main, Germany (1)
Laboratório de Pesquisa em Apicomplexa - Instituto Carlos Chagas – FIOCRUZ/PR. (1)
Mass Spectrometry Facility, Department of Biochemistry and Molecular Biology, University of Texas Medical Branch at Galveston, USA (1)
Mass Spectrometry Research Center, Department of Biochemistry, Vanderbilt University (1)
MiNA Therapeutics, United Kingdom (1)
Prof Matthias Trost Chair of Proteomics Newcastle University Faculty of Medical Sciences Institute for Cell and Molecular Biosciences Framlington Place Newcastle-upon-Tyne NE2 4HH, UK Tel. ++44 (0) 191 2087009 Email: matthias.trost@ncl.ac.uk http://www.trostlab.org (1)
Prof. Nir Eynon, Australian Regenerative Medicine Institute, Monash University, Clayton VIC 3800, Australia.Proteomics contact: Dr Joel R. Steele, Monash Proteomics & Metabolomics Platform, Monash Biomedicine Discovery Institute, Monash University, Clayton VIC, Australia (1)

Tags

xref:PubMed:21900967 (2)
xref:PubMed:37349523 (1)
xref:PubMed:23197828 (1)
xref:PubMed:31395738 (1)
xref:EuropePMC:PMC7666147 (1)

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Deciphering Metabolic Resistance to Multiple Herbicides in Palmer amaranth (Amaranthus palmeri S. Watson) via Transcriptome Analysis

Multiple herbicide resistance in Palmer amaranth (Amaranthus palmeri S. Watson) poses a serious threat to US crop production. A Palmer amaranth population (KCTR) from Kansas was found resistant to herbicides across six sites of action, including ALS-, PS II-, EPSPS-, PPO-, HPPD-inhibitors and synthe...

ORGANISM(S): Amaranthus palmeri

2026-04-07 | GSE326567 | GEO

Deciphering Metabolic Resistance to Multiple Herbicides in Palmer amaranth (Amaranthus palmeri S. Watson) via Transcriptome Analysis

PRJNA1445906 | ENA

Mechanism of Resistance to S-metolachlor in Palmer amaranth.

Not available

S-EPMC7994610 | biostudies-literature

Selection of rhizobacteria isolates with bioherbicide potential against Palmer amaranth (Amarathus palmeri S. Wats.).

Not available

S-EPMC8324687 | biostudies-literature

Streptococcus pneumoniae, S. pyogenes and S. agalactiae membrane phospholipid remodelling in response to human serum.

Not available

S-EPMC8290102 | biostudies-literature

Streptococcus pneumoniae, S. mitis, and S. oralis Produce a Phosphatidylglycerol-Dependent, ltaS-Independent Glycerophosphate-Linked Glycolipid.

Not available

S-EPMC8544892 | biostudies-literature

A comprehensive portrait of tissue-, age- and sex-specific DNA modifications in rodents and humans

DNA damage causes genomic instability underlying many diseases, with traditional analytical approaches providing minimal insight into the spectrum of DNA lesions in vivo. Here we used untargeted chromatography-coupled tandem mass spectrometry-based adductomics (LC-MS/MS) to define the landscape of D...

ORGANISM(S): Homo sapiens (Human) Rattus norvegicus (Rat)

2023-09-12 | PXD045311 | Pride

Adductomics Strp mrm

Formation of S-Cl phosphorothioate adduct radicals in dsDNA S-oligomers: hole transfer to guanine vs disulfide anion radical formation.

Not available

S-EPMC3789529 | biostudies-literature

Predominance of Metabolic Resistance in a Six-Way-Resistant Palmer Amaranth (Amaranthus palmeri) Population.

Not available

S-EPMC7841332 | biostudies-literature

Physiological and Molecular Mechanisms of Differential Sensitivity of Palmer Amaranth (Amaranthus palmeri) to Mesotrione at Varying Growth Temperatures.

Not available

S-EPMC4437998 | biostudies-literature

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