Pamps - OmicsDI

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Unknown (644)
Genomics (101)
Transcriptomics (100)
Proteomics (30)
Other (4)
Models (1)
Metabolomics (1)

Organisms

Mus musculus (38)
Arabidopsis thaliana (28)
Homo sapiens (27)
Bartonella quintana JK 31 (18)
Bombyx mori (18)
Onchocerca volvulus (18)
Klebsiella pneumoniae (18)
Musca domestica (18)
Brugia malayi (18)
Schizosaccharomyces pombe (18)
Cnidaria (18)
Streptomyces coelicolor A3(2) (18)
Sus scrofa (18)
Human immunodeficiency virus 1 (18)
Oryza sativa Indica Group (18)
Eukaryota (18)
Sinorhizobium meliloti BL225C (18)
Oryza sativa (3)
Vitis vinifera (3)
Paralichthys olivaceus (2)
Oncorhynchus mykiss (2)
Bos taurus (2)
Danio rerio (2)
Biomphalaria glabrata (1)
Solanum lycopersicum (1)
Candida albicans (1)
Brassica rapa (1)
Arabidopsis (1)
Sus scrofa (1)
Magnaporthe (1)

Organisms

Mus musculus (28)
Homo sapiens (21)
Arabidopsis thaliana (16)
Solanum lycopersicum (3)
Oncorhynchus mykiss (2)
Vitis vinifera (2)
Taxus x media (1)
Biomphalaria glabrata (1)
Paralichthys olivaceus (1)
Eriocheir sinensis (1)
Arabidopsis (1)
Candida albicans (1)
Oryza sativa (1)
Brassica rapa (1)
Sus scrofa (1)
Danio rerio (1)
Bos taurus (1)

Repository

ENA (94)
geo (74)
biostudies-arrayexpress (35)
pride (18)
MassIVE (7)
iProX (2)
PanoramaPublic (2)
EGA (1)
FAIRDOMHub (1)
GPMDB (1)
MetaboLights (1)
PAXDB (1)

Tissue

Cell culture (5)
Leaf (4)
Plant cell (2)
Macrophage (2)
Monocyte (2)
Fungal asexual spore (1)
Placenta (1)
Prokaryotic cell (1)
Blood (1)

Disease

Not Available (1)
Disease free (1)

Technology Type

Mass Spectrometry (18)
Shotgun proteomics (14)
Data-dependent acquisition (2)
Mass spectrometry (1)
Gel-based experiment (1)
Bottom-up proteomics (1)
Affinity purification coupled with mass spectrometry proteomics (1)

Instrument Platform

Q Exactive HF-X (2)
Illumina HiSeq 4000 (1)
NextSeq 500 (1)
Instrument (1)
TSQ Quantiva (1)
NanoACQUITY UPLC (1)
LTQ (1)
LTQ Orbitrap (1)
Orbitrap Fusion Lumos (1)
5975C Series GC/MSD (Agilent) (1)

Publication Date

2022 (13)
2025 (13)
2024 (11)
2021 (10)
2015 (9)
2014 (9)
2010 (8)
2009 (8)
2016 (7)
2020 (7)
2026 (6)
2017 (6)
2023 (6)
2018 (5)
2012 (4)
2011 (4)
2019 (4)
2013 (3)
2008 (3)
2006 (1)
2007 (1)
2005 (1)

UNIPROT ID/AC

AGO1D_ORYSJ (1)
Q337T3_ORYSJ (1)
B7EA34_ORYSJ (1)
A0A0P0WU30_ORYSJ (1)
Q6K9T9_ORYSJ (1)
A0A0P0XK57_ORYSJ (1)
B9FMH1_ORYSJ (1)
Q657F3_ORYSJ (1)
Q0DTB8_ORYSJ (1)
A0A0P0WZQ8_ORYSJ (1)
AB51G_ORYSJ (1)
Q338P6_ORYSJ (1)
CK5P1_ORYSJ (1)
A0A0P0W5I6_ORYSJ (1)
LOX3_ORYSJ (1)
ACA5_ORYSJ (1)
A0A0P0X9Y2_ORYSJ (1)
Q7XVG5_ORYSJ (1)
GLU2A_ORYSJ (1)
A0A0P0Y6M0_ORYSJ (1)
Q0E423_ORYSJ (1)
Q2RAP8_ORYSJ (1)
Q69S88_ORYSJ (1)
Q5JK37_ORYSJ (1)
Q6YT57_ORYSJ (1)
Q6Z6H8_ORYSJ (1)
Q5JML8_ORYSJ (1)
Q6YYB9_ORYSJ (1)
BGL29_ORYSJ (1)
Q0DY58_ORYSJ (1)

CHEBI ID

CHEBI:17765 (1)
CHEBI:27469 (1)
CHEBI:82838 (1)
CHEBI:48300 (1)
CHEBI:36632 (1)
CHEBI:8337 (1)
CHEBI:17123 (1)
CHEBI:77131 (1)
CHEBI:17992 (1)
CHEBI:18287 (1)
CHEBI:26984 (1)
CHEBI:33508 (1)
CHEBI:33404 (1)
CHEBI:28757 (1)
CHEBI:37084 (1)
CHEBI:28621 (1)
CHEBI:15728 (1)
CHEBI:16977 (1)
CHEBI:4139 (1)
CHEBI:86348 (1)
CHEBI:28842 (1)
CHEBI:15428 (1)
CHEBI:14336 (1)
CHEBI:16958 (1)
CHEBI:33198 (1)
CHEBI:4167 (1)
CHEBI:16119 (1)
CHEBI:15741 (1)
CHEBI:17268 (1)
CHEBI:30746 (1)

Metabolite Name

Unknown 21, RT(min) = 22.9 (1)
Unknown 20, RT(min) = 19.2 (1)
Unknown 19, RT(min) = 18.7 (1)
Unknown 18, RT(min) = 18.2 (1)
Unknown 17, RT(min) = 17.9 (1)
Unknown 16, RT(min) = 17.8 (1)
Unknown 15, RT(min) = 17.7 (1)
Unknown 14, RT(min) = 17.4 (1)
Unknown 13, RT(min) = 16.8 (1)
Unknown 12, RT(min) = 16.3 (1)
Unknown 11, RT(min) = 16.0 (1)
Unknown 10, RT(min) = 15.8 (1)
Unknown 9, RT(min) = 15.4 (1)
Unknown 8, RT(min) = 15.2 (1)
Unknown 7, RT(min) = 14.3 (1)
Unknown 6, RT(min) = 13.9 (1)
Unknown 5, RT(min) = 13.8 (1)
Unknown 4, RT(min) = 13.0 (1)
Unknown 3, RT(min) = 12.9 (1)
Unknown 2, RT(min) = 11.5 (1)
Unknown 1, RT (min) = 9.4 (1)
Lilioside B (1)
EINECS 208-487-3 (1)
2-ketogluconic acid (1)
3-Glycerophosphate (1)
L-fucose (1)
Xylitol (1)
D-Lyxopyranose (1)
Triethanolamine (1)
D-malic acid (1)

First Public Date

2014 (15)
2025 (14)
2024 (14)
2021 (7)
2015 (7)
2023 (6)
2022 (5)
2017 (5)
2016 (5)
2026 (4)
2020 (4)
2019 (3)
2013 (3)
2018 (2)

Classification

fungi (1)

Study type

Transcription profiling by array (29)
RNA-seq of coding RNA (3)
Transcription profiling by RT-PCR (1)
ChIP-seq (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (72)
2021 (68)
2020 (60)
2023 (45)
2019 (43)
2024 (42)
2018 (39)
2016 (39)
2025 (38)
2017 (37)
2014 (36)
2015 (35)
2013 (27)
2012 (24)
2011 (21)
2010 (20)
2026 (9)
2009 (9)
2008 (9)
2007 (4)
2006 (2)

Lab affiliation

MRC Centre for Medical Mycology University of Exeter, Geoffrey Pope Building, Stocker Road, Exeter EX4 4QD, UK (2)
Swedish University of Agricultural Sciences, Department of Plant Protection Biology (1)
Agriculture and Agrifood Canada Morden Research and Development Centre (1)
Department of Plant Pathology, University of California, Davis (1)
NIH (1)
Department of Plant Bioscience, Pusan National University, Miryang 50463, South Korea (1)
Department of Plant Pathology, University of Georgia, Athens, Georgia, USA (1)
Investigator Chief, Cellular Networks Proteomics Unit Laboratory of Immune System Biology National Institute of Allergy and Infectious Diseases National Institutes of Health Bldg. 4 Rm. 101 4 Memorial Dr Bethesda MD 20892-1892 (1)
Umeå University, Department of Chemistry, 90187 Umeå, Sweden (1)
Dept of Metabolism Digestion and Reproduction, Imperial College London, London, UK (1)
The Sainsbury Laboratory (1)
Head of Laboratory of Epitranscriptomics Faculty of Biology, Biological and Chemical Research Centre, University of Warsaw, Poland (1)
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, 50463, Republic of Korea (1)
University of Florida (1)
Host Septomics - ZIK Septomics Jena University Hospital 07745 Jena Germany (1)
Universitat de Barcelona. Parc Cientific de Barcelona. Proteomics Lab. (1)
university of edinburgh (1)

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PAMPS and Innate Immune Memory

PRJNA1004311 | ENA

Perpetual expression of PAMPs necessary for optimal immune control and clearance of a persistent pathogen.

Not available

S-EPMC4161029 | biostudies-literature

Using PAMPs and DAMPs as adjuvants in cancer vaccines.

Not available

S-EPMC8903972 | biostudies-literature

Gene expression profiling of zebrafish embryos at 1 hour post injection of PAMPs

We use the zebrafish embryo model to study the transcriptome responses to flagellin and Pam3CSK4. Therefore, we injected these PAMPs into the caudal vein at the 27 hours post fertilization and took samples at 1 hour post injection.

ORGANISM(S): Danio rerio

2015-11-18 | GSE64570 | GEO

NLRP12-PANoptosome activates PANoptosis and pathology in response to heme and PAMPs.

Not available

S-EPMC10330523 | biostudies-literature

Re-masking of fungal cell wall PAMPs in response to environmental pH is regulated by multiple processes

PRJNA542108 | ENA

Transcription profiling of human and bovine gamma delta T cells after PBS vs. LPS stimulation

gd T cells recognize unprocessed or non-peptide antigens, respond rapidly to infection, and localize to mucosal surfaces. We have hypothesized that the innate functions of gd T cells may be more similar to those of cells of the myeloid lineage than to other T cells. To begin to test this assumptio...

ORGANISM(S): Homo sapiens

2008-06-12 | E-GEOD-2396 | biostudies-arrayexpress

HIV-1 Structural Proteins Serve as PAMPs for TLR2 Heterodimers Significantly Increasing Infection and Innate Immune Activation.

Not available

S-EPMC4541371 | biostudies-literature

Enhancing Anode-Free Battery Performance with Self-Healing Single-Ion Conducting PAMPS-<i>co</i>-PBA Copolymer Interfaces.

Not available

S-EPMC12022949 | biostudies-literature

ROCK1 orchestrates B cell differentiation in response to PAMPs and heme by controlling the heme-regulated proteins Bach2 and HRI

PRJNA994159 | ENA