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TranscriptomicsTranscriptomic effects of caloric restriction reflected in primate difference
Caloric restriction (CR) can delay morbidity and mortality in a broad range of species, including mice and macaques. Mutations and chemical agents, such as resveratrol or rapamycin that partly mimic the CR effect, can similarly increase survival or extend lifespan. In humans, however, the effects of...
ORGANISM(S): Pan troglodytes 
2013-02-28 | E-GEOD-44147 | biostudies-arrayexpress
GenomicsCTCF binding patterns in mouse trophoblast stem cells
This Series reports data from a CTCF ChIP-Seq experiment performed in F1-hybrid mouse trophoblast stem cells (TSCs). The data are part of a larger study examining inactive X gene expression and chromatin states, reported as GEO Series GSE39406. Included for this dataset are FASTQ files, BED alignmen...
ORGANISM(S): Mus musculus 
2012-09-08 | E-GEOD-40667 | biostudies-arrayexpress
TranscriptomicsModeling human brain evolution using induced pluripotent stem cells: comparative analysis of neuronal development in humans and chimpanzees
Understanding evolutionary mechanisms underlying expansion and reorganization of the human brain represents an important aspect in analyzing the emergence of cognitive abilities typical of our species. Comparative analyses of neuronal phenotypes in closest living relatives (Pan troglodytes; the comm...
ORGANISM(S): Pan troglodytes 
2016-08-07 | E-GEOD-83638 | biostudies-arrayexpress
ProteomicsPatient datasets for: A large peptidome dataset improves HLA class I epitope prediction across most of the human population
Sarkizova S, Klaeger S, Le PM, Li LW, Oliveira G, Keshishian H, Hartigan CH, Zhang W, Braun DA, Ligon KL, Bachireddy P, Zervantonakis IK, Rosenbluth JM, Ouspenskaia T, Law T, Justeson S, Stevens J, Lane WJ, Eisenhaure T, Zhang GL, Clauser KR, Hacohen N, Carr SA, Wu CJ, Keskin DB. Nature Biotechnolog...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2019-10-09 | MSV000084442 | MassIVE
ProteomicsMono-allelic datasets for: A large peptidome dataset improves HLA class I epitope prediction across most of the human population
Sarkizova S, Klaeger S, Le PM, Li LW, Oliveira G, Keshishian H, Hartigan CH, Zhang W, Braun DA, Ligon KL, Bachireddy P, Zervantonakis IK, Rosenbluth JM, Ouspenskaia T, Law T, Justeson S, Stevens J, Lane WJ, Eisenhaure T, Zhang GL, Clauser KR, Hacohen N, Carr SA, Wu CJ, Keskin DB. Nature Biotechnolog...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2019-08-06 | MSV000084172 | MassIVE
UnknownPan-Genome Portrait of Bacillus mycoides Provides Insights into the Species Ecology and Evolution.
Not available
S-EPMC8552610 | biostudies-literature
GenomicsCTCF Binding Sites by ChIP-seq from ENCODE/University of Washington
This data was generated by ENCODE. If you have questions about the data, contact the submitting laboratory directly (Richard Sandstrom mailto:sull@u.washington.edu). If you have questions about the Genome Browser track associated with this data, contact ENCODE (mailto:genome@soe.ucsc.edu). This tra...
ORGANISM(S): Homo sapiens 
2011-06-29 | E-GEOD-30263 | biostudies-arrayexpress
UnknownDecoding the diagnostic and therapeutic potential of microbiota using pan-body pan-disease microbiomics.
Not available
S-EPMC11427559 | biostudies-literature
UnknownAGAPE (Automated Genome Analysis PipelinE) for pan-genome analysis of Saccharomyces cerevisiae.
Not available
S-EPMC4363492 | biostudies-literature
UnknownAfrican soil properties and nutrients mapped at 30 m spatial resolution using two-scale ensemble machine learning.
Not available
S-EPMC7969779 | biostudies-literature
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