Pan Yu Y - OmicsDI

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Unknown (2922)
Proteomics (105)
Metabolomics (15)
Genomics (14)
Transcriptomics (13)

Organisms

Homo sapiens (51)
Bombyx mori (46)
Klebsiella pneumoniae (46)
Schizosaccharomyces pombe (46)
Human immunodeficiency virus 1 (46)
Oryza sativa Indica Group (46)
Sinorhizobium meliloti BL225C (46)
Sus scrofa domesticus (46)
Ostreococcus tauri (46)
Saccharomyces cerevisiae (46)
Synechocystis sp. PCC 6803 (46)
Olavius algarvensis Gamma 1 endosymbiont (46)
Vitis vinifera (46)
Staphylococcus aureus (46)
Rattus norvegicus (46)
Rattus rattus (46)
Pseudomonas aeruginosa (46)
Mus musculus (15)
Anser cygnoides (2)
Rattus rattus (2)
Brassica oleracea (1)
Macaca mulatta (1)
Hordeum vulgare (1)
Saccharomyces cerevisiae (1)
Sus scrofa (1)
Vibrio cholerae (1)
Vibrio cholerae H1 (1)
Spinacia oleracea (1)
Drosophila melanogaster (1)
Oryctolagus cuniculus (1)

Repository

iProX (52)
pride (46)
biostudies-arrayexpress (14)
MetaboLights (14)
EGA (13)
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Tissue

Cell culture (9)
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Disease

Kidney cancer (3)
Breast cancer (3)
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Lymphoma (1)
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Malaria (1)
COVID-19 (1)
Acute leukemia (1)

Technology Type

Mass Spectrometry (46)
Shotgun proteomics (17)
Bottom-up proteomics (15)
Mass spectrometry (9)
Gel-based experiment (5)
Data-dependent acquisition (5)
Affinity purification coupled with mass spectrometry proteomics (5)
Mass spectrometry assay (4)
SWATH MS (4)
Illumina HiSeq 2000, ILLUMINA (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
NMR spectroscopy (1)
DiaPASEF (1)
Data-independent acquisition (1)
SRM/MRM (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (8)
Liquid Chromatography MS - positive - reverse phase (8)
Orbitrap Fusion Lumos (3)
Q Exactive (3)
Illumina HiSeq 2500 (2)
LTQ Orbitrap Elite (2)
Liquid Chromatography MS - positive - hilic (2)
Illumina HiSeq 2000 (1)
TripleTOF 5600 (1)
Orbitrap Exploris 480 (1)
Liquid Chromatography MS - alternating – hilic (1)
Direct infusion MS - negative (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
Liquid Chromatography MS - alternating - hilic (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - negative - hilic (1)

Publication Date

2025 (23)
2022 (17)
2023 (14)
2024 (12)
2026 (11)
2020 (9)
2021 (9)
2014 (4)
2018 (4)
2019 (3)
2016 (2)
2012 (2)
2015 (1)
2011 (1)
2008 (1)

CHEBI ID

CHEBI:16704 (10)
CHEBI:17568 (9)
CHEBI:17596 (9)
CHEBI:17368 (9)
CHEBI:15891 (8)
CHEBI:17802 (8)
CHEBI:16335 (8)
CHEBI:16919 (8)
CHEBI:21557 (7)
CHEBI:73722 (7)
CHEBI:17015 (7)
CHEBI:7916 (7)
CHEBI:17509 (7)
CHEBI:17750 (7)
CHEBI:16040 (7)
CHEBI:16750 (7)
CHEBI:16235 (7)
CHEBI:17154 (7)
CHEBI:16259 (6)
CHEBI:76308 (6)
CHEBI:24813 (6)
CHEBI:73054 (6)
CHEBI:42504 (6)
CHEBI:48131 (6)
CHEBI:4676 (6)
CHEBI:15355 (6)
CHEBI:41865 (6)
CHEBI:16467 (6)
CHEBI:17351 (6)
CHEBI:18089 (6)

Metabolite Name

Cytosine (7)
Hypoxanthine (7)
Creatine (7)
Taurine (7)
Adenosine (6)
Niacinamide (6)
Betaine (5)
Propionylcarnitine (5)
Pantothenic acid (5)
Acetylcholine (5)
Cotinine (5)
Sebacic acid (5)
Oleamide (5)
Heptadecanoyl carnitine (5)
Glycerophosphocholine (5)
Uracil (5)
Guanine (5)
Creatinine (5)
Choline (5)
Biotin (5)
7-Aminomethyl-7-carbaguanine (4)
1-(beta-D-Glucopyranosyloxy)-3-octanone (4)
(E)-5-(3,4,5,6-Tetrahydro-3-pyridylidenemethyl)-2-furanmethanol (4)
SM(d18:1/20:0) (4)
Isonicotinic acid (4)
Glycerol tripropanoate (4)
Latanoprost (4)
Sphingosine (4)
Benzaldehyde (4)
Pantothenol (4)

Study type

RNA-seq of coding RNA (6)
Transcription profiling by array (3)
Other (2)
Animal - High-throughput sequencing (1)
Methylation profiling by array (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2025 (501)
2022 (410)
2023 (392)
2024 (389)
2021 (305)
2020 (228)
2019 (140)
2018 (134)
2017 (95)
2015 (70)
2016 (69)
2026 (67)
2014 (50)
2013 (26)
2012 (23)
2011 (11)
2009 (8)
2010 (6)
2007 (6)
2008 (3)
2006 (2)
2005 (1)

Lab affiliation

State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Sun Yat-sen University Cancer Center, Guangzhou, 510060, China (3)
Zhejiang University (3)
Department of Clinical Laboratory Medicine, Shanghai Tenth People’s Hospital of Tongji University, Shanghai, 200072, China (2)
1Cancer Institute, the Second Affiliated Hospital, and Institute of Translational Medicine, Zhejiang University School of Medicine, Hangzhou 310029, China 2Cancer Center, Zhejiang University, Hangzhou 310058, China 3Research Center for Life Science and Human Health, Binjiang Institute of Zhejiang University, Hangzhou 310053, China (1)
Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Switzerland Faculty of Science, University of Zurich, Switzerland (1)
Department of Integration of Chinese and Western Medicine, School of Basic Medical Sciences, Peking University, 38 Xueyuan Road, Beijing 100191, People’s Republic of China (1)
Institutes of Biomedicine Science, Fudan University (1)
Dalian Institute of Chemical Physics, Chinese Academy of Sciences (CAS) (1)
Joint International Research Laboratory of Metabolic & Developmental Sciences, Key Laboratory of Urban Agriculture (South) Ministry of Agriculture, Plant Biotechnology Research Center, Fudan-SJTU-Nottingham Plant Biotechnology R&D Center, School of Agriculture and Biology, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, P. R. China (1)
Children's Hospital of Soochow University, Suzhou (1)
Department of Orthopedics, the Eighth Affiliated Hospital of Sun Yat-sen University, Shenzhen 518003, P.R. China (1)
Florey Institute, University of Melbourne, Parkville, Victoria 3052, Australia (1)
State Key Laboratory of Medical Proteomics, National Chromatographic R. & A. Center, CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian 116023, China. (1)
Tsinghua university, Department of chemistry (1)
Department of Molecular Biology; Kang Lab; Princeton University, Princeton, NJ, USA (1)
Prometabio Research Institute, prometabio co., ltd. Hanam-si, Gyeonggi-do, Republic of Korea (1)
Department of Biochemistry and Molecular Cell Biology, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Shanghai Key Laboratory for Tumor Microenvironment and Inflammation, Shanghai Jiao Tong University School of Medicine, Shanghai, China (1)
College of Biology, Hunan University (1)
Shaoxing Maternity and Child Health Care Hospital, Shaoxing 312000, China. (1)
College of Pharmceutial Science, Zhejiang University of Technology (1)
Institute of Biomedical Engineering and Technology, Shanghai Engineering Research Center of Molecular Therapeutics and New Drug Development, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200062, P.R. China (1)
Hangzhou Women's Hospital, Hangzhou, China (1)
Shanghai Center for Systems Biomedicine, Shanghai Jiao Tong University, Shanghai, China. (1)
Pharmaceutical science, Zhejiang University of Technology (1)
Shanghai Jiao Tong University School of Medicine (1)
Institute of Pediatric Research, Children's Hospital of Soochow University, Suzhou, China. (1)
School of Health Preservation and Rehabilitation, Chengdu University of Traditional Chinese Medicine, Chengdu, China. (1)
Institute of Reproductive Medicine, Medical School, Nantong University, Nantong 226001, China (1)
Shanghai tenth people of Tongji University (1)
Breast Tumor Center Sun Yat-Sen Memorial Hospital Sun Yat-Sen University 107 Yanjiang West Road Guangzhou 510120, P.R.China (1)

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Subsets of visceral adipose tissue nuclei with discrete levels of 5-hydroxymethylcytosine

We explored the hypothesis that adipose tissue contains epigenetically distinct subpopulations of adipocytes that are differentially potentiated to record cellular memories of their environment. Adipocytes are large, fragile, and technically difficult to efficiently isolate and fractionate. We devel...

ORGANISM(S): Sus scrofa

2016-07-20 | E-GEOD-73684 | biostudies-arrayexpress

Construction of efficient virus removal and micropropagation system for 'Yu Tai Yi Hao' chrysanthemum.

Not available

S-EPMC12603245 | biostudies-literature

Rattus norvegicus lung LC-MS/MS

Male Sprague-Dawley rats were used to establish exhausted-exercise model by motorized rodent treadmill. Yu-Ping-Feng-San at doses of 2.18 g/kg was administrated by gavage before exercise training for 10 consecutive days. Quantitative proteomics was performed for assessing the related mechanism of Yu...

ORGANISM(S): Rattus norvegicus (Rat)

2022-08-12 | PXD032737 | Pride

Genomic and clinical features of endoplasmic reticulum stress factor in digestive system pan-cancer studies.

Not available

S-EPMC9868864 | biostudies-literature

Mechanism of interventional effect and targets of Zhuyu Pill in regulating and suppressing colitis and cholestasis

Zhuyu pill (ZYP) is a traditional Chinese medicine prescription composed of two drugs, Coptis chinensis Franch. and Tetradium ruticarpum (A. Jussieu) T. G. Hartley, and is commonly used in the clinical treatment of diseases of the digestive system. However, the mechanism underly...

2022-11-02 | MTBLS4980 | MetaboLights

Effects of Yu-Ping-Feng polysaccharides (YPS) on the immune response, intestinal microbiota, disease resistance and growth performance of Litopenaeus vannamei.

Not available

S-EPMC7333637 | biostudies-literature

PGAP: pan-genomes analysis pipeline.

Not available

S-EPMC3268234 | biostudies-literature

AANL (Agrocybe aegerita lectin 2) is a new facile tool to probe for O-GlcNAcylation.

Not available

S-EPMC6454498 | biostudies-literature

Yu-Ping-Feng Formula Ameliorates Alveolar-Capillary Barrier Injury Induced by Exhausted-Exercise via Regulation of Cytoskeleton.

Not available