Park S J SJ - OmicsDI

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Unknown (2443)
Proteomics (26)
Genomics (10)
Metabolomics (8)
Transcriptomics (7)
Models (1)

Organisms

Homo sapiens (29)
Mus musculus (5)
Arabidopsis thaliana (2)
Staphylococcus aureus (2)
Arachis hypogaea (1)
Bacteria (1)
Escherichia coli (1)
Lepeophtheirus salmonis (1)
Mycobacterium phage Bxb1 (1)
Pseudomonas aeruginosa (1)

Repository

pride (25)
EGA (9)
biostudies-arrayexpress (8)
MetaboLights (8)
BioModels (1)
PanoramaPublic (1)

Tissue

Cell culture (6)
Blood plasma (4)
Epithelial cell (4)
Kidney (2)
Blood (1)
Blood cell (1)
Blood platelet (1)
Brain (1)
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Excretion (1)
Granule cell (1)
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Neutrophil (1)
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Primary cell (1)
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Secretion (1)
Skin (1)

Disease

Breast cancer (2)
Disease free (2)
Gray platelet syndrome (2)
Avian influenza (1)
Brain glioblastoma multiforme (1)
Charcot-Marie-Tooth disease (1)
Chronic kidney disease (1)
Influenza (1)
Spinal muscular atrophy (1)
Urinary bladder cancer (1)

Technology Type

Mass Spectrometry (25)
Shotgun proteomics (10)
Mass spectrometry (7)
Bottom-up proteomics (5)
Affinity purification coupled with mass spectrometry proteomics (3)
Gel-based experiment (3)
SWATH MS (3)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
Illumina OncoArray (1)
Mass spectrometry assay (1)
NMR spectroscopy (1)
HDMSE (1)
Mass spectrometry imaging (1)
SRM/MRM (1)

Instrument Platform

Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography MS - positive - reverse phase (1)
MS Imaging - (1)
Nuclear Magnetic Resonance (NMR) - (1)
LTQ XL (ICN) (1)
Thermo Finnigan LTQ XL (1)

Publication Date

2013 (6)
2025 (6)
2026 (4)
2023 (4)
2019 (4)
2018 (4)
2020 (4)
2011 (3)
2021 (2)
2022 (2)
2017 (1)
2016 (1)
2014 (1)

CHEBI ID

CHEBI:116314 (2)
CHEBI:15354 (2)
CHEBI:15356 (2)
CHEBI:15428 (2)
CHEBI:15676 (2)
CHEBI:15724 (2)
CHEBI:15843 (2)
CHEBI:15891 (2)
CHEBI:16335 (2)
CHEBI:16359 (2)
CHEBI:16449 (2)
CHEBI:16704 (2)
CHEBI:16811 (2)
CHEBI:16865 (2)
CHEBI:16919 (2)
CHEBI:17234 (2)
CHEBI:17750 (2)
CHEBI:17754 (2)
CHEBI:17822 (2)
CHEBI:18095 (2)
CHEBI:18186 (2)
CHEBI:18237 (2)
CHEBI:22653 (2)
CHEBI:22660 (2)
CHEBI:24898 (2)
CHEBI:25017 (2)
CHEBI:25094 (2)
CHEBI:26271 (2)
CHEBI:26986 (2)
CHEBI:27266 (2)

Metabolite Name

Cholic acid (2)
1-hexanol (1)
1-methylhistamine (1)
1-monolinolein (1)
1-undecene (1)
11-trans-octadecenoic acid (1)
2'-deoxyadenosine (1)
2'-deoxycytidine (1)
2,5-dihydroxypyrazine (1)
2-Arachidonyl glycerol (1)
2-cyclopenten-1-one (1)
2-furanmethanol (1)
2-hydroxypyridine (1)
2-linoleoylglycerol (1)
2-palmitoylglycerol (1)
23-Nor deoxycholic acid (1)
3,4-dihydroxybenzoic acid (1)
3-(3-hydroxyphenyl)propionic acid (1)
3-(4-hydroxyphenyl)propionic acid (1)
3-Deazaadenosine (1)
3-aminoisobutyric acid (1)
3-deoxyhexonic acid (1)
3-hydroxyisobutyric acid (1)
3-hydroxykynurenine (1)
3-hydroxypyridine (1)
3-indolepropionic acid (1)
3-methyl-1-butanol (1)
3-methylbutanal (1)
3-methylpiperazine-2,5-dione (1)
4-bromofluorobenzene (1)

IsPrivate

False (1)

Modelling Approach

Ordinary differential equation model (1)

Modification

15.994915 (1)
57.021464 (1)

Study type

Transcription profiling by array (4)
Comparative genomic hybridization by array (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of coding RNA (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (281)
2022 (249)
2023 (248)
2024 (232)
2021 (232)
2020 (184)
2019 (166)
2018 (149)
2016 (130)
2017 (128)
2015 (107)
2014 (90)
2013 (63)
2026 (41)
2012 (40)
2011 (37)
2010 (24)
2008 (19)
2009 (18)
2007 (5)
2006 (2)
2005 (2)
2004 (2)
2003 (1)
2000 (1)

Lab affiliation

Department of Life Sciences, Pohang University of Science and Technology (POSTECH), Pohang, Republic of Korea (2)
Prometabio Research Institute, prometabio co., ltd. (2)
Center for Genomic Integrity, Institute for Basic Science, Ulsan, Korea (1)
Center for Theragnosis, Korea Institute of Science and Technology, Seoul, Korea (1)
College of Pharmacy, Kyungpook National University, 80 Daehak-ro, Buk-gu, Daegu 41566 Korea (1)
Department of Applied Chemistry, Institute of Natural Science, Global Center for Pharmaceutical Ingredient Materials, Kyung Hee University, Yongin, Republic of Korea; Department of Biomedical Science and Technology, Kyung Hee Medical Science Research Institute, Kyung Hee University, Seoul, Republic of Korea. (1)
Department of Biotechnology, College of Life Science and Biotechnology, Korea University, Seoul, Republic of Korea (1)
Department of Chemistry and Biochemistry, The University of Texas at Dallas (1)
Department of Chemistry, Korea university (1)
Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (1)
Department of Life Science (1)
Department of Life Sciences and Division of Integrative Biosciences and Biotechnology Pohang University of Science and Technology Pohang 790-784, Republic of Korea (1)
Dept. Cellular and Molecular Pharmacology, University of California - San Francisco (UCSF), USA (1)
Head of The Steen-Laboratory, Director of Proteomics, Boston Children's Hospital, Harvard Medical School (1)
Laboratory Head The Walter and Eliza Hall Institute of Medical Research 1G Royal Parade Parkville Victoria 3052 Australia (1)
Leibniz-Institut für Analytische Wissenschaften – ISAS – e.V. Otto-Hahn-Straße 6b 44227 Dortmund, Germany P: +49 (0)2 31.13 92-100 F: +49 (0)2 31.13 92-200 www.isas.de (1)
Mayo Clinic (1)
Neil F. Inglis Moredun Proteomics Facility Moredun Research Institute Pentlands Science Park Bush Loan Penicuik Midlothian EH26 0PZ Tel +44 131 445 5111 (1)
Proteomics and Metabolomics Core Facility, Biomedical Research Institute, Seoul National University Hospital (1)
Seoul National University, College of Medicine (1)
Stanford University Canary Center at Stanford for Cancer Early Detection (1)
Stoller Biomarker Discovery Centre, University of Manchester, United kingdom (1)
University of Pittsburgh, Department of Biological Sciences (1)

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Targeting RAF Isoforms and Tumor Microenvironments in RAS or BRAF Mutant Colorectal Cancers with SJ-C1044 for Anti-Tumor Activity.

Not available

S-EPMC10378394 | biostudies-literature

Staphylococcus aureus RN4220 wild-type extracellular vesicle proteome

Bacteria actively secrete extracellular vesicles (EVs), spherical nano-sized proteolipids into the extracellular milieu. Bacterial EVs have gained wide interests as non-living complex vaccines or delivery vehicles. However, no studies have used bacterial EVs in treating cancer so far. Our results sh...

ORGANISM(S): Staphylococcus aureus

2018-11-22 | PXD006913 | Pride

FGF21 induced by carbon monoxide mediates metabolic homeostasis via the PERK/ATF4 pathway.

Not available

S-EPMC5901375 | biostudies-literature

Tetraspanin-2 promotes glucotoxic apoptosis by regulating the JNK/β-catenin signaling pathway in human pancreatic β cells.

Not available

S-EPMC5001516 | biostudies-literature

A Comparison of Conventional Rotating Method and Non-Rotating Method for Double-Lumen Tube Insertion Using a Customized Rigid J-Shaped Stylet for One-Lung Ventilation: A Randomized Controlled Trial.

Not available

S-EPMC11396204 | biostudies-literature

Molecular signatures of human iPSCs highlight sex differences and cancer genes

We compared human female hiPSC lines (all derived from IMR-90 fibroblasts) that were XIST RNA-positive and XIST RNA-negative. We also examined the gene expression patterns for 2 female hIPSCs (derived from different disease model fibroblasts) that were also negative for XIST RNA. hiPS 12D-1 is deri...

ORGANISM(S): Homo sapiens

2013-12-03 | E-GEOD-36233 | biostudies-arrayexpress

The comparisons of expression pattern reveal molecular regulation of fruit metabolites in S. nigrum and S. lycopersicum.

Not available

S-EPMC8943121 | biostudies-literature

Headspace volatile organic compounds from bacteria implicated in ventilator-associated pneumonia analysed by TD-GC/MS

Ventilator-associated pneumonia (VAP) is a healthcare-acquired infection arising from the invasion of the lower respiratory tract by opportunistic pathogens in ventilated patients. The current method of diagnosis requires the culture of an airway sample such as bronchoalveolar lavage, which is invas...

2018-08-08 | MTBLS497 | MetaboLights

Escherichia coli msbB-deficient mutant extracellular vesicle proteome

ORGANISM(S): Escherichia coli

2018-11-22 | PXD006912 | Pride

Exosomes Escherichia coli Extracellular vesicles Outer membrane vesicles Bacteria

Epigenome-Wide Meta-Analysis of Methylation in Children Related to Prenatal NO2 Air Pollution Exposure.

Not available

S-EPMC5226705 | biostudies-literature

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