Park Y Y - OmicsDI

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Unknown (24789)
Proteomics (284)
Transcriptomics (264)
Genomics (73)
Metabolomics (35)
Models (8)
Genomic (3)
Multiomics (1)

Organisms

Homo sapiens (280)
Mus musculus (100)
Drosophila melanogaster (78)
Arabidopsis thaliana (18)
Rattus norvegicus (14)
Bos taurus (6)
Oryza sativa (5)
Geobacter sulfurreducens PCA (3)
Schizosaccharomyces pombe (3)
Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 (2)
Lepidium sativum (2)
Escherichia coli str. K-12 substr. MG1655 (2)
Candida albicans (2)
Mammalia (1)
Rodentia (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Bathyergus suillus (1)
Streptococcus pneumoniae R6 (1)
Puccinia graminis f. sp. tritici (1)
Brassica oleracea (1)
Drosophila mojavensis (1)
Rosa hybrid cultivar (1)
Teleopsis dalmanni (1)
Arachis hypogaea (1)
Capsicum annuum (1)
uncultured bacterium (1)
Brassica rapa subsp. pekinensis (1)
Aspergillus nidulans (1)
Pan troglodytes (1)
Populus euphratica (1)

Organisms

Homo sapiens (2)
Abies pinsapo (1)
Tursiops truncatus (1)
soil metagenome (1)
gut metagenome (1)
Drosophila melanogaster (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (288)
pride (241)
EGA (41)
MetaboLights (35)
MassIVE (24)
ENA (11)
BioModels (8)
jPOST (4)
dbGaP (3)
iProX (3)
PanoramaPublic (3)
PAXDB (3)
PeptideAtlas (2)
geo (1)

Tissue

Cell culture (53)
Epithelial cell (25)
Brain (16)
Permanent cell line cell (15)
Blood plasma (11)
B cell (9)
Leaf (6)
Blood cell (5)
Kidney (5)
Blood serum (4)
Heart (4)
Liver (4)
Macrophage (4)
Stem cell (4)
Cell suspension culture (3)
Colon (3)
Fibroblast (3)
Lung (3)
Testis (3)
Astrocyte (2)
Blood (2)
Cyst (2)
Embryo (2)
Embryonic stem cell (2)
Hepatocyte (2)
Hypocotyl (2)
Oral epithelium (2)
Plant cell (2)
Rumen (2)
T cell (2)

Disease

Disease free (13)
Breast cancer (9)
Alzheimer's disease (8)
Colon cancer (6)
Type 2 diabetes mellitus (5)
Acute leukemia (4)
Cholangiocarcinoma (3)
Influenza (3)
Primary sclerosing cholangitis (3)
COVID-19 (2)
Bladder transitional cell carcinoma (2)
Hepatocellular carcinoma (2)
Lung adenocarcinoma (2)
Lung cancer (2)
Lymphoma (2)
Melanoma (2)
Pancreatic intraductal papillary-mucinous neoplasm (2)
Parkinson's disease (2)
Locally advanced rectal cancer (1)
N/a (1)
Normal (1)
Avian influenza (1)
Bone giant cell tumor (1)
Brain cancer (1)
Breast secretory carcinoma (1)
Cardiovascular system disease (1)
Cervix carcinoma (1)
Excessive tearing (1)
Intestinal disease (1)
Liver cancer (1)

Technology Type

Mass Spectrometry (241)
Shotgun proteomics (124)
Bottom-up proteomics (55)
Mass spectrometry (32)
Data-dependent acquisition (30)
Affinity purification coupled with mass spectrometry proteomics (24)
Gel-based experiment (15)
Top-down proteomics (7)
NMR spectroscopy (5)
SRM/MRM (5)
SWATH MS (5)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
Data-independent acquisition (3)
Mass spectrometry imaging (2)
Affymetrix 6.0 (1)
HiSeq X Ten, Illumina HiSeq 2500, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2500, HiSeq X Ten (1)
Illumina HiSeq 2000, Affymetrics_SNP_6.0-, Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
Illumina HiSeq 2000, HiSeq X Ten, Illumina HiSeq 2500, ILLUMINA (1)
Illumina Infinium 1.2M (1)
Illumina OncoArray (1)
DiaPASEF (1)
Olink affinity proteomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (9)
Liquid Chromatography MS - positive - reverse phase (9)
Q Exactive (7)
Illumina HiSeq 4000 (5)
Illumina NovaSeq 6000 (4)
LTQ Orbitrap Elite (4)
LTQ Orbitrap Velos (4)
Orbitrap Fusion (4)
Q Exactive Plus (3)
Gas Chromatography MS - positive (3)
Illumina Genome Analyzer (2)
Illumina Genome Analyzer II (2)
Orbitrap Eclipse (2)
Q Exactive HF (2)
LTQ Orbitrap (2)
Pacbio Revio (1)
Linux Bash Scripting (1)
NEBNext Ultra II Directional RNA Library Prep (1)
Qiagen RNeasy Mini Kit (1)
With L-glutamine supplemented with 10% fetal bovine serum (FBS) (Gibco) and 1% penicillin-streptomycin (10,000 units/mL penicillin and 10 mg/mL streptomycin) (Gibco). (1)
GenePix 4200A (1)
Other (1)
R (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
LTQ (1)
LTQ FT (1)
LTQ Orbitrap XL (1)
Orbitrap Exploris 240 (1)
Q Exactive HF-X (1)

Publication Date

2011 (67)
2023 (52)
2010 (52)
2013 (51)
2025 (41)
2026 (35)
2022 (33)
2015 (32)
2014 (31)
2020 (29)
2024 (27)
2012 (25)
2021 (24)
2018 (23)
2019 (21)
2016 (21)
2017 (20)
2009 (10)
2007 (6)
2005 (4)
2008 (3)
2006 (2)
2004 (1)

UNIPROT ID/AC

1433A_SOYBN (2)
1433B_SOYBN (2)
1433C_SOYBN (2)
1433D_SOYBN (2)
2SS_SOYBN (2)
3847.GLYMA0042S100.1 (2)
3847.GLYMA0070S50.1 (2)
3847.GLYMA01G05321.1 (2)
3847.GLYMA01G05765.1 (2)
3847.GLYMA01G09540.1 (2)
3847.GLYMA01G09640.1 (2)
3847.GLYMA01G14160.1 (2)
3847.GLYMA01G22140.1 (2)
3847.GLYMA01G23427.1 (2)
3847.GLYMA01G25116.1 (2)
3847.GLYMA01G27160.1 (2)
3847.GLYMA01G29440.1 (2)
3847.GLYMA01G33803.1 (2)
3847.GLYMA01G35730.1 (2)
3847.GLYMA01G35820.1 (2)
3847.GLYMA01G42950.2 (2)
3847.GLYMA02G01060.2 (2)
3847.GLYMA02G01170.1 (2)
3847.GLYMA02G04090.1 (2)
3847.GLYMA02G06710.1 (2)
3847.GLYMA02G07430.1 (2)
3847.GLYMA02G07740.1 (2)
3847.GLYMA02G11920.1 (2)
3847.GLYMA02G14495.1 (2)
3847.GLYMA02G14521.1 (2)

CHEBI ID

CHEBI:30769 (13)
CHEBI:15741 (12)
CHEBI:15756 (12)
CHEBI:15891 (12)
CHEBI:17992 (12)
CHEBI:15354 (11)
CHEBI:16704 (11)
CHEBI:17295 (11)
CHEBI:17596 (11)
CHEBI:28044 (11)
CHEBI:28842 (11)
CHEBI:30915 (11)
CHEBI:15428 (10)
CHEBI:15603 (10)
CHEBI:16196 (10)
CHEBI:16335 (10)
CHEBI:16708 (10)
CHEBI:17306 (10)
CHEBI:50211 (3)
CHEBI:15346 (1)
CHEBI:15351 (1)
CHEBI:15414 (1)
CHEBI:15625 (1)
CHEBI:15729 (1)
CHEBI:15746 (1)
CHEBI:16610 (1)
CHEBI:16643 (1)
CHEBI:17148 (1)
CHEBI:17312 (1)
CHEBI:22204 (1)

Metabolite Name

Sucrose (8)
Citric acid (7)
Glucose (7)
Maltose (7)
Alanine (6)
Glycerol (6)
Glycine (6)
Inosine (6)
Succinic acid (6)
Uridine (6)
Fructose (5)
Fumaric acid (5)
Lactate (5)
Malic acid (5)
Phenylalanine (5)
Uracil (5)
Urea (5)
Valine (5)
Adenosine (4)
Alpha-tocopherol (4)
CDP-ethanolamine (4)
Glutamate (4)
Glutamine (4)
Guanosine (4)
L-Arginine (4)
Lysine (4)
Oleic acid (4)
Ornithine (4)
Oxalic acid (4)
Trigonelline (4)

First Public Date

2025 (4)
2020 (3)
2022 (2)
2023 (1)
2013 (1)

Modelling Approach

Ordinary differential equation model (5)
Differential equation model (1)
Other (1)
Population model (1)

Lab affiliation

Proteomics core facility, Biomedical Research Institute, Seoul National University Hospital (6)
Division of Genetic and Genomic Medicine, Department of Pediatrics, UPMC Children's Hospital of Pittsburgh, Pittsburgh, USA (3)
State Key Laboratory of Reproductive Medicine (3)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (2)
Center for Cell Signaling Department of Biochemistry & Molecular Genetics University of Virginia, Charlottesville, VA, USA (2)
Center for Natural Product Systems Biology, Korea Institute of Science and Technology (2)
Center for Theragnosis, KIST, Seoul, Korea (2)
Department of Biological Sciences, Seoul National University, Seoul, Republic of Korea (2)
Department of Botany and Plant Pathology, Purdue University (2)
Department of Plant Science and Technology, Chung-Ang University, Anseong 17546, Republic of Korea (2)
Departments of Biomedical Sciences, Seoul National University, Seoul, Korea (2)
Personalized Genomic Medicine Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB) (2)
Ping Xu, Ph.D. Secretary General of CNHUPO Professor, Director Department of Genomics and Proteomics, State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing) Beijing Institute of Lifeomics， 38 Life Science Park Road, Beijing 102206, P.R. China. Tel: 0086-10-61777113, Fax: 0086-10-61777060 (2)
Proteomics core facility, Seoul National University Hospital (2)
Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (2)
University of Illinois Urbana-Champaign (2)
1. Centre for Myopia Research, School of Optometry, The Hong Kong Polytechnic University, Hong Kong 2. Centre for Eye and Vision Research (CEVR), 17W Hong Kong Science Park, Hong Kong 3. Research Centre for SHARP Vision (RCSV), The Hong Kong Polytechnic University, Hong Kong (1)
1Department of Pathology, Dana-Farber/Harvard Cancer Center, PhD Program in Immunology, Harvard Medical School; Department of Laboratory Medicine, Boston Children's Hospital, Enders Research Building, Room 811, Boston, MA, 02115, USA (1)
1F, Bldg A, No.18 Science Park Road, Life Science Park, Changping District, Beijing 102206, P. R. China (1)
3Centers for Proteomics & Artificial Intelligence and Clinical Mass Spectrometry, Allegheny Health Network Cancer Institute, Allegheny Health Network, Pittsburgh, PA15202, USA (1)
APAF, Macquarie University (1)
Animal Sciences Department, Ohio Sate University (1)
Apoptosis and Molecular Disease Lab, Department of Biological Sciences, Seoul National University (1)
Assistant Professor, Clinical Cancer Prevention, University of Texas MD Anderson Cancer Center (1)
Assistant Professor, Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599 USA (1)
Basilbiotech, Incheon, Republic of Korea (1)
Baxter Laboratory for Stem Cell Biology Department of Microbiology & Immunology Stanford University School of Medicine 269 Campus Drive CCSR 3205b Stanford, CA 94305-5175 (1)
Bertis R&D Division, Bertis Inc., Republic of Korea (1)
BioDiscovery Institute, Department of Biological Sciences, University of North Texas (1)
Biochemistry and Molecular Biology Department, Eberly College of Science, Pennsylvania State University, University Park, PA, USA. (1)

IsPrivate

False (8)

Model Flag

Non Kinetic (1)

Submitter Keywords

COVID-19 (1)

Modification

4x(15)N labeled L-arginine (2)
15.994915 (1)
1x(15)N labeled L-valine (1)
2x(15)N labeled L-lysine (1)
42.010565 (1)
58.005479 (1)

Study type

Transcription profiling by array (101)
ChIP-chip by tiling array (71)
RNA-seq of coding RNA (44)
ChIP-seq (16)
Transcription profiling by tiling array (9)
RNA-seq of non coding RNA (8)
Genotyping by array (6)
Comparative genomic hybridization by array (5)
RNA-seq of coding RNA from single cells (5)
Other (4)
Proteomic profiling by array (4)
Methylation profiling by high throughput sequencing (4)
Unknown experiment type (3)
Baseline (2)
Transcription profiling by MPSS (1)
High-throughput sequencing (1)
ChIP-chip by array (1)
Transcription profiling by RT-PCR (1)
DNA-seq (1)
Methylation profiling by array (1)

Release Date

2025 (2975)
2022 (2717)
2023 (2580)
2024 (2539)
2021 (2364)
2020 (1973)
2019 (1682)
2018 (1388)
2017 (1233)
2016 (1093)
2015 (880)
2014 (778)
2013 (530)
2026 (453)
2012 (441)
2011 (418)
2010 (347)
2009 (202)
2008 (163)
2007 (96)
2006 (72)
2005 (52)
2004 (29)
2000 (17)
2003 (16)
2001 (16)
2002 (9)
1999 (7)
1998 (5)
1997 (1)

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Short-term changes in the serum metabolome after laparoscopic sleeve gastrectomy and Roux-en-Y gastric bypass

INTRODUCTION: Bariatric surgery is known to be the most effective treatment for weight loss in obese patients and for the rapid remission of obesity-related comorbidities. These short-term improvements result from not only limited digestion or absorption but also dynamic changes ...

2022-03-17 | MTBLS2472 | MetaboLights

A key role for neuropeptide Y in lifespan extension and cancer suppression by dietary restriction

Key molecules that modulate the effect of dietary restriction (DR), a well-known laboratory intervention for longevity in organisms, remain elusive in mammals. We evaluated neuropeptide Y (Npy), which is involved in the physiological adaptation to energy deficits, for its role in the effects of DR. ...

ORGANISM(S): Mus musculus

2013-02-28 | E-GEOD-42761 | biostudies-arrayexpress

A time- and cost-effective strategy to sequence mammalian Y Chromosomes: an application to the de novo assembly of gorilla Y.

Not available

S-EPMC4817776 | biostudies-literature

Transcription profiling of mouse germline during spermatogenesis reveals X and Y occupy a novel compartment in the post-meiotic spermatid and adopt a non-Rabl configuration

In mammals, the X and Y chromosomes are subject to meiotic sex chromosome inactivation (MSCI) during prophase I in the male germline, but their status thereafter is currently unclear. An abundance of X-linked spermatogenesis genes has spawned the view that the X must be active [1-8]. On the other ha...

ORGANISM(S): Mus musculus

2007-12-07 | E-GEOD-4193 | biostudies-arrayexpress

Dynamic evolution of great ape Y chromosomes.

Not available

S-EPMC7585023 | biostudies-literature

Measurement properties of the EQ-5D-Y administered through a smartphone app in children with asthma: a longitudinal questionnaire study.

Not available

S-EPMC8959271 | biostudies-literature

ZNF280BY and ZNF280AY: autosome derived Y-chromosome gene families in Bovidae.

Not available

S-EPMC3032696 | biostudies-literature

Revisiting the y-ome of Escherichia coli.