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ProteomicsMaxLFQ label-free quantification algorithm benchmark datasets
We developed a set of algorithms for label-free quantification, termed MaxLFQ, embedded into MaxQuant. This contains two datasets to benchmark MaxLFQ: The proteome benchmark dataset consists of of HeLa and E. coli lysates mixed at defined ratios. The dynamic range benchmark dataset consists of UPS1...
ORGANISM(S): Escherichia Coli (ncbitaxon:562) Homo Sapiens (ncbitaxon:9606) 
2017-12-19 | MSV000081831 | MassIVE
ProteomicsS.pombe - Whole organism, SC (Kulaketal,natmethods2014)
abundance based on Spectral counting, Interaction consistency score: 15.4, Coverage: 33
ORGANISM(S): 4896 
2014-00-00 | 2189306272 | PAXDB
ProteomicsH.sapiens - Cell line, SC (Kulaketal,natmethods2014)
abundance based on Spectral counting, Interaction consistency score: 12.4, Coverage: 7
ORGANISM(S): 9606 
2014-00-00 | 1861201586 | PAXDB
ProteomicsS.cerevisiae - Whole organism, SC (Kulaketal,natmethods2014)
abundance based on Spectral counting, Interaction consistency score: 22.1, Coverage: 68
ORGANISM(S): 4932 
2014-00-00 | 1072451528 | PAXDB
ProteomicsThe impact II, a very high resolution quadrupole time-of-flight instrument for deep shotgun proteomics
Hybrid quadrupole time-of-flight (QTOF) is one of the two major mass spectrometric technologies used in proteomics. Although based on simple fundamental principles, it has over the last decades greatly evolved in terms of achievable resolution, mass accuracy and dynamic range. The Bruker impact plat...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) Saccharomyces Cerevisiae (ncbitaxon:4932) Mus Musculus (ncbitaxon:10090) 
2016-07-19 | MSV000079935 | MassIVE
ProteomicsM.musculus - Cerebellum, iBAQ (Becketal.,molcellproteomics2015)
abundance based on iBAQ, Interaction consistency score: 19.7, Coverage: 48
ORGANISM(S): 10090 
2015-00-00 | 1779616615 | PAXDB
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