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Genomics[E-TABM-722] Transcription factor binding evolution in five vertebrates
Five-vertebrate ChIP-seq reveals the evolutionary dynamics of trancription factor binding. The SRF files for this experiment can be found in the European Read Archive with study accession number ERP000054. ArrayExpress Submission Date: Apr 07 2010 ArrayExpress Release Date: Apr 08 2010 Publication A...
ORGANISM(S): Homo sapiens Mus musculus Gallus gallus Canis lupus familiaris Monodelphis domestica 
2010-06-02 | GSE22078 | GEO
TranscriptomicsTranscription profiling of human primary B-cell vs monocyte-derived dendritic cells
Genome-wide RNAi screen reveals new pathways for MHC class II antigen presentation
ORGANISM(S): Homo sapiens 
2010-12-18 | E-MTAB-192 | biostudies-arrayexpress
TranscriptomicsMethylation profiling of healthy human CD4+ cells after CD3 and CD28 stimulation
Genome-wide DNA methylation reference profiles of CD4+ cells after CD3 and CD28 stimulation in two healthy human individuals using the MeDIP technique a custom oligonucleotide array targetting the vast majority of annotated TSSs and non-promoter CGIs in the human genome.
ORGANISM(S): Homo sapiens 
2010-03-23 | E-MTAB-207 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of mouse liver with CEBPa wild type and knockout animals.
Expression analysis of CEBPa knockout effects on gene expression in adult mouse liver. We used a conditional knock out strategy to delete CEBPa specifically in adult mouse hepatocytes and analysed the resulting changes in gene expression by means of microarrays.
ORGANISM(S): Mus musculus 
2010-04-08 | E-MTAB-178 | biostudies-arrayexpress
GenomicsTissue-specific ChIP-seq for RNA pol II and H2A.v in Drosophila melanogaster
ChIP-seq study analysing adult Drosophila melanogaster head, glial, neuronal and fat body, as well as embryonic RNA pol II and H2A.v binding by employing the GAL4-UAS system to generate GFP-fusion proteins and ChIP-seq
ORGANISM(S): Drosophila melanogaster 
2013-08-25 | E-MTAB-1117 | biostudies-arrayexpress
GenomicsCTCF binding evolution in mammals
ChIP-seq study in human, macaque, mouse, rat and opossum for CTCF (milipore: 07-729 and custom AB in opossum), STAG1 in opossum (abcam: ab4457)
ORGANISM(S): Monodelphis domesticus 
2011-11-01 | E-MTAB-437 | biostudies-arrayexpress
Genomics[E-TABM-722] Transcription factor binding evolution in five vertebrates
[E-TABM-722] Transcription factor binding evolution in five vertebrates
PRJNA128961 | ENA
TranscriptomicsTranscription profiling of human MCF7 cells in oestrogen treatment time course.
Expression analysis in human MCF7 cells after 3h, 6h or 12h of oestrogen treatment
ORGANISM(S): Homo sapiens 
2010-03-08 | E-MTAB-158 | biostudies-arrayexpress
GenomicsChIP-seq of Canis familiaris, Gallus gallus, Mus musculus, Homo sapiens, Monodelphis domestica to investigate CEBPA and HNF4a binding in five vertebrates
Five-vertebrate ChIP-seq reveals the evolutionary dynamics of trancription factor binding. The SRF files for this experiment can be found in the European Read Archive with study accession number ERP000054. The fastq files can be found in the raw archives and for some assays links to the ENA runs and...
ORGANISM(S): Canis familiaris 
2010-04-08 | E-TABM-722 | biostudies-arrayexpress
GenomicsNational Cancer Institute Genome-Wide Association Study of Renal Cell Carcinoma

The National Cancer Institute (NCI) genome-wide association study (GWAS) of renal cell carcinoma (RCC) was conducted to investigate common genetic variants associated with RCC risk. The GWAS includes 1,453 RCC cases and 3,531 controls of European background from 4 studies (3 cohort, 1 case-con...

phs000351.v1.p1 | EGA
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