Sort   by:  
 Page size 
TranscriptomicsTranscription profiling by array of Arabidopsis cell suspensions after treatment with methyl jasmonate
The transcriptional response of Arabidopsis thaliana cell suspensions following treatment with the stress hormone methyl jasmonate (MeJA) was monitored over time 16 hours after subcultivation. Three time points were included: 30 minutes, 2 hours and 6 hours after elicitation with 50µm MeJA or DMSO a...
ORGANISM(S): Arabidopsis thaliana 
2007-12-30 | E-ATMX-13 | biostudies-arrayexpress
TranscriptomicsRNA-seq analysis of Arabidopsis thaliana cells treated with RN1 and 2,4-D
A PSB-D wild type Arabidopsis thaliana cell culture (Arabidopsis Biological Resource Center stock: CCL84840) was grown after subculturing for one week and divided into separate 10 mL samples for 24 h. Samples were then treated with 50 µM RubNeddin1 (RN1, Chembridge ID 6389186), 2,4-D, or an equal vo...
ORGANISM(S): Arabidopsis thaliana 
2021-08-03 | E-MTAB-7761 | biostudies-arrayexpress
TranscriptomicsRoot transcriptome of ninja-1
A major role of NINJA is to repress root jasmonate signalling and allow normal cell elongation. To further characterize the transcriptional changes occurring in the root in the absence of a NINJA-dependent repression mechanism, we conducted a microarray analysis of ninja-1 versus WT roots. Root tran...
ORGANISM(S): Arabidopsis thaliana 
2015-05-28 | E-GEOD-65840 | biostudies-arrayexpress
TranscriptomicsRNA-seq analysis of grxs17 seedlings
RNA was isolated from 14 day old Arabidopsis grxs17 seedlings in three biological repeats using the RNeasy Plant Mini Kit (Qiagen) and DNase I treated (Promega). A TruSeq RNA-Seq library (Illumina) was compiled and sequenced as 50-bp single read using Illumina HiSeq 2000. Control samples can be foun...
ORGANISM(S): Arabidopsis thaliana 
2018-01-02 | E-MTAB-5001 | biostudies-arrayexpress
GenomicsGenome-wide identification of PPD2 target genes
To identify the direct target genes of PPD2, tandem chromatin affinity purification (TChAP, Verkest et al. (2014)), a variant of chromatin immunoprecipitation (ChIP) in which tandem affinity tags are used instead of epitope tags, followed by sequencing (TChAP-Seq) was performed. An Arabidopsis cell ...
ORGANISM(S): Arabidopsis thaliana 
2015-07-07 | E-MTAB-3046 | biostudies-arrayexpress
TranscriptomicsNINJA connects JAZ proteins to the co-repressor TOPLESS
NINJA (At4g28910) and TOPLESS proteins function as negative regulators of jasmonate responses. Our results point to TPL proteins as general co-repressors that affect multiple signalling pathways through the interaction with specific adaptor proteins. This new insight reveals how stress- and growth-...
ORGANISM(S): Arabidopsis thaliana 
2010-04-05 | E-GEOD-19455 | biostudies-arrayexpress
TranscriptomicsIdentification of KIL1 targets via RNA-Seq in Zea mays
To understand how the NAC transcription factor KIL1 regulates age-induced senescence and cell death in maize silks, we need to get a genome-wide view on its downstream targets. We propose to compare the transcriptome profiles of GOF and LOF transgenic silk tissue with the profile of wild-type B104 s...
ORGANISM(S): Zea mays 
2022-08-16 | E-MTAB-10850 | biostudies-arrayexpress
Sort   by:  
 Page size