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Genomics
(2446)
Transcriptomics
(1820)
Unknown
(903)
Metabolomics
(120)
Proteomics
(114)
Other
(10)
Models
(6)
Methylation profiling
(2)
Multiomics
(1)
Organisms
Arabidopsis thaliana
(807)
Oryza sativa
(77)
Zea mays
(71)
Triticum aestivum
(43)
Hordeum vulgare
(42)
Oryza sativa Japonica Group
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Solanum tuberosum
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Glycine max
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Medicago truncatula
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Solanum lycopersicum
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Vitis vinifera
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Oryza sativa Indica Group
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Brassica napus
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Sinorhizobium meliloti
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Folsomia candida
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Mus musculus
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Populus tremula x Populus alba
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soil metagenome
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Gossypium hirsutum
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Hordeum vulgare subsp. vulgare
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Enchytraeus albidus
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Eisenia fetida
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Populus x canadensis
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Bacillus amyloliquefaciens
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Populus trichocarpa
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Nicotiana tabacum
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Caenorhabditis elegans
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uncultured bacterium
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Brachypodium distachyon
(8)
Organisms
peat metagenome
(1317)
moss metagenome
(296)
soil metagenome
(147)
rhizosphere metagenome
(120)
permafrost metagenome
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Arabidopsis thaliana
(19)
uncultured Syntrophaceae bacterium
(5)
uncultured prokaryote
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Sphagnum rubellum
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Sphagnum fallax
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Populus tremula x Populus alba
(4)
sediment metagenome
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Homo sapiens
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Sphagnum angustifolium
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Sphagnum fuscum
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Quercus robur
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Solanum lycopersicum
(3)
Zea mays
(3)
Mus musculus
(3)
uncultured Anaerolineae bacterium
(2)
Paedocypris sp. Pulau Singkep
(2)
bog metagenome
(2)
Sphagnum rubiginosum
(2)
terrestrial metagenome
(2)
uncultured bacterium
(2)
compost metagenome
(2)
Triticum aestivum
(2)
Brassica rapa subsp. chinensis
(2)
Repository
ENA
(2376)
biostudies-arrayexpress
(1857)
MetaboLights
(117)
MassIVE
(85)
geo
(37)
pride
(17)
PAXDB
(9)
FAIRDOMHub
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iProX
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GNPS
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jPOST
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EGA
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GPMDB
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ExpressionAtlas
(1)
NODE
(1)
PanoramaPublic
(1)
Tissue
Leaf
(7)
Plant cell
(4)
Blood plasma
(1)
Bone matrix
(1)
Plant
(1)
Root
(1)
Root nodule
(1)
Skin
(1)
Disease
Normal
(6)
Reference
(2)
Not Available
(2)
Inoculated with P. syringae pv. tomato strain DC3000 + avrRps4
(1)
Diseased
(1)
No lesions
(1)
Challenged with Pieris rapae larvae
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Blumeria graminis hordei (powdery mildew) inoculation
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Mock 24 h
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1dpi
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Infected
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Chronic infection with geohelminth ascaris lumbricoides
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Healthy
(1)
Monosporascus cannonballus infected
(1)
Non-diabetic
(1)
Disease free
(1)
Technology Type
Mass spectrometry
(67)
Mass spectrometry assay
(49)
Mass Spectrometry
(17)
Shotgun proteomics
(10)
NMR spectroscopy
(3)
Bottom-up proteomics
(3)
Gel-based experiment
(3)
Data-dependent acquisition
(1)
HDMSE
(1)
SWATH MS
(1)
Instrument Platform
Illumina NovaSeq 6000
(70)
Illumina HiSeq 2000
(44)
Illumina HiSeq 2500
(34)
Illumina HiSeq 4000
(20)
NextSeq 500
(16)
Illumina MiSeq
(15)
Illumina Genome Analyzer IIx
(7)
ScanArray scanning hardware
(6)
ScanArray 4000 [PerkinElmer]
(5)
Agilent G2505B scanner
(5)
Axon- GenePix4000B
(5)
Illumina Genome Analyzer II
(5)
BGISEQ-500
(5)
Illumina HiSeq 3000
(5)
418 [Affymetrix]
(4)
Illumina HiSeq 1000
(4)
Axon GenePix 4000A scanning hardware
(3)
GenePix 4000A [Axon Instruments]
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Other
(3)
Scanning hardware
(3)
Axon GenePix 4000B scanning hardware
(3)
Illumina NovaSeq X
(3)
N/A
(3)
Controlled-environment growth chamber (short-day; 8 h light / 16 h dark)
(2)
Macrogen
(2)
Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia in Katowice
(2)
PromethION
(2)
Agilent scanner G2505B
(2)
Agilent scanner
(2)
Tecan HS400Pro
(2)
Publication Date
2014
(211)
2013
(199)
2010
(198)
2012
(192)
2011
(190)
2015
(154)
2008
(117)
2016
(109)
2009
(109)
2025
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2026
(73)
2024
(58)
2022
(56)
2007
(53)
2023
(52)
2020
(50)
2017
(40)
2021
(36)
2018
(36)
2006
(34)
2019
(30)
2005
(27)
2004
(19)
2003
(2)
2027
(1)
UNIPROT ID/AC
3880.AES58538
(6)
3880.AES58539
(6)
3880.AES58557
(6)
3880.AES58577
(6)
3880.AES58595
(6)
3880.AES58596
(6)
3880.AES58598
(6)
3880.AES58611
(6)
3880.AES58637
(6)
3880.AES58673
(6)
3880.AES58697
(6)
3880.AES58766
(6)
3880.AES58788
(6)
3880.AES58833
(6)
3880.AES58880
(6)
3880.AES58897
(6)
3880.AES58900
(6)
3880.AES58960
(6)
3880.AES58990
(6)
3880.AES59003
(6)
3880.AES59180
(6)
3880.AES59185
(6)
3880.AES59286
(6)
3880.AES59334
(6)
3880.AES59339
(6)
3880.AES59397
(6)
3880.AES59531
(6)
3880.AES59549
(6)
3880.AES59555
(6)
3880.AES59608
(6)
CHEBI ID
CHEBI:18012
(12)
CHEBI:15741
(11)
CHEBI:28300
(10)
CHEBI:17268
(10)
CHEBI:15428
(10)
CHEBI:27266
(9)
CHEBI:15756
(9)
CHEBI:30769
(9)
CHEBI:17992
(8)
CHEBI:26271
(8)
CHEBI:26986
(8)
CHEBI:16857
(8)
CHEBI:18237
(8)
CHEBI:28842
(8)
CHEBI:22653
(8)
CHEBI:17822
(7)
CHEBI:22660
(7)
CHEBI:18186
(7)
CHEBI:16708
(7)
CHEBI:25017
(7)
CHEBI:28044
(7)
CHEBI:6650
(7)
CHEBI:16977
(7)
CHEBI:26078
(7)
CHEBI:17521
(6)
CHEBI:17234
(6)
CHEBI:16551
(6)
CHEBI:15963
(6)
CHEBI:16119
(6)
CHEBI:16112
(6)
Metabolite Name
Adenine
(27)
Adenosine
(25)
Guanosine
(23)
Hypoxanthine
(23)
Guanine
(21)
Thymidine
(20)
Cytosine
(19)
L-Phenylalanine
(19)
Coumarin
(18)
Choline
(18)
Uridine
(18)
Uracil
(17)
Azelaic acid
(17)
L-Tyrosine
(17)
L-Histidine
(16)
L-Tryptophan
(15)
Inosine
(15)
Thymine
(14)
Lumichrome
(14)
Piperidine
(14)
Indole
(14)
12-Hydroxydodecanoic acid
(14)
L-Proline
(14)
Deoxyguanosine
(14)
Xanthine
(14)
Sucrose
(14)
L-Carnitine
(14)
Betaine
(13)
Diethanolamine
(13)
Tryptamine
(13)
First Public Date
2025
(658)
2020
(338)
2019
(250)
2026
(243)
2018
(179)
2017
(154)
2024
(148)
2021
(143)
2022
(79)
2016
(76)
2023
(34)
2014
(34)
2013
(23)
2015
(15)
2012
(1)
2011
(1)
Classification
bacteria
(1)
Study type
Transcription profiling by array
(1230)
RNA-seq of coding RNA
(311)
RNA-seq of non coding RNA
(63)
Transcription profiling by tiling array
(26)
Other
(26)
ChIP-seq
(26)
Comparative genomic hybridization by array
(25)
Plant - High-throughput sequencing
(20)
Unknown experiment type
(19)
Methylation profiling by high throughput sequencing
(18)
DNA-seq
(16)
ChIP-chip by tiling array
(13)
ChIP-chip by array
(11)
Methylation profiling by array
(10)
RNA-seq of total RNA
(8)
Bisulfite-seq
(7)
High-throughput sequencing
(3)
Plant - Two-color microarray
(2)
Plant - One-color microarray
(2)
Genotyping by array
(2)
MicroRNA profiling by high throughput sequencing
(2)
ATAC-seq
(2)
MicroRNA profiling by array
(2)
RNA-seq of coding RNA from single cells
(2)
Cell line - Two-color microarray
(1)
MicroRNA profiling by high-throughput sequencing
(1)
RNAi profiling by array
(1)
Transcription profiling by RT-PCR
(1)
Spatial transcriptomics by high-throughput sequencing
(1)
RIP-seq
(1)
Release Date
2014
(241)
2013
(222)
2010
(210)
2012
(207)
2011
(206)
2015
(197)
2016
(144)
2021
(120)
2008
(119)
2025
(118)
2023
(118)
2022
(117)
2009
(112)
2020
(109)
2017
(92)
2024
(86)
2018
(83)
2019
(73)
2007
(54)
2006
(37)
2026
(35)
2005
(31)
2004
(20)
2003
(3)
2001
(2)
1998
(2)
2002
(1)
Lab affiliation
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany
(1)
Beijing University of Agriculture
(1)
Cancer
(1)
Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, 1350 Copenhagen, Denmark
(1)
Department of Biochemistry and Microbiology, Institute of Biology; Warsaw University of Life Sciences-SGGW
(1)
Department of Ornamental Horticulture, Sichuan Agricultural University, 211 Huimin Road, Wenjiang District, Chengdu, Sichuan, 611130, P.R. China
(1)
EDyP
(1)
Gansu Agricultural University
(1)
Institute of Horticulture Crops, Xinjiang Academy of Agricultural Sciences
(1)
Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo náměstí 542/2, 160 00, Prague 6, Czech Republic
(1)
Laboratory of Plant Molecular Physiology, Centre of Biotechnology of Borj Cedria, P.O. Box 901, 2050 Hammam‑Lif, Tunisia.
(1)
Laboratory of proteomics of non-model organism in Instituto de Tecnologia Quimica e Biologica
(1)
Laboratório de Biologia Celular e Tecidual Centro de Biociências e Biotecnologia Universidade Estadual do Norte Fluminense Darcy Ribeiro(UENF), Av. Alberto Lamego, Campos dos Goytacazes, RJ, Brazil.
(1)
Microbiology Department, The Ohio State University, United States of America
(1)
Section for Evolutionary Genomics, GLOBE Institute, University of Copenhagen, Copenhagen, Denmark; McDonald Institute for Archaeological Research, University of Cambridge, Cambridge, UK
(1)
Stoller biomarker discovery centre, University of Manchester, UK
(1)
University of Sydney
(1)
Tags
xref:PubMed:39625876
(6)
xref:PubMed:30104406
(5)
xref:PubMed:29476143
(3)
xref:PubMed:37822080
(3)
xref:PubMed:41034697
(3)
xref:PubMed:33093443
(3)
xref:PubMed:29098760
(3)
xref:PubMed:29467397
(2)
xref:PubMed:35863239
(2)
xref:PubMed:27015005
(2)
xref:PubMed:28707409
(2)
xref:PubMed:41047469
(2)
xref:PubMed:42562292
(1)
xref:PubMed:27187266
(1)
xref:PubMed:37089656
(1)
xref:PubMed:22972706
(1)
xref:PubMed:41367092
(1)
xref:PubMed:24748042
(1)
xref:PubMed:25283338
(1)
xref:PubMed:40954928
(1)
xref:PubMed:19645735
(1)
xref:PubMed:27986952
(1)
xref:PubMed:40461733
(1)
xref:PubMed:33135964
(1)
xref:PubMed:34497619
(1)
xref:PubMed:40344486
(1)
xref:PubMed:38077131
(1)
xref:PubMed:34984789
(1)
xref:PubMed:35242906
(1)
xref:PubMed:26449384
(1)
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peat metagenome
Microbial Community Structure of Tropical Peat Swamp Forests across a Peat Dome in Sarawak, Malaysia
PRJNA588113
|
ENA
Cite
peat
peat Raw sequence reads
PRJNA490429
|
ENA
Cite
Linking prokaryotic community composition to carbon biogeochemical cycling across a tropical peat dome in Sarawak, Malaysia.
Not available
S-EPMC7979770
|
biostudies-literature
Cite
Peat
Stordalen Mire Peat Catechin Incubations
PRJNA1137330
|
ENA
Cite
peat metagenome
peat metagenome Metagenome
PRJNA431733
|
ENA
Cite
peat metagenome
peat sample Raw sequence reads
PRJNA360662
|
ENA
Cite
peat metagenome
peat sample Raw sequence reads
PRJNA379042
|
ENA
Cite
peat metagenome
peat metagenome Raw sequence reads
PRJNA489317
|
ENA
Cite
Peat metagenome
Peat metagenome Raw sequence reads
PRJNA488558
|
ENA
Cite
An assessment of oil palm plantation aboveground biomass stocks on tropical peat using destructive and non-destructive methods.
Not available
S-EPMC7010673
|
biostudies-literature
Cite
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