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TranscriptomicsComparing two transcriptome technologies - sequencing match microarrays
This SuperSeries is composed of the following subset Series: GSE34461: Comparing two transcriptome technologies - sequencing match microarrays [Array] GSE34477: Comparing two transcriptome technologies - sequencing match microarrays [RNA-Seq] Refer to individual Series
ORGANISM(S): Streptococcus thermophilus 
2012-06-09 | E-GEOD-34478 | biostudies-arrayexpress
ProteomicsDownregulation of antigen presentation-associated pathway proteins in poor outcome triple-negative breast cancer patient tumors
Triple-negative breast cancer (TNBC) is a heterogeneous subtype with varying disease outcomes. Tumor infiltrating lymphocytes (TILs) are frequent in TNBC and have been shown to correlate with outcome, suggesting an immunogenic component in this subtype. However, other factors, intrinsic to the cance...
ORGANISM(S): Homo sapiens (Human) 
2018-10-26 | PXD005544 | Pride
Mhc class i antigen presentation pathway Proteomics Major histocompatibility complex Mass spectrometry Basal-like breast cancer Biomarker Triple-negative breast cancer Formalin-fixed paraffin embedded 
TranscriptomicsComparing two transcriptome technologies - sequencing match microarrays [RNA-Seq]
Next-generation sequencing has emerged as a promising platform for whole genome transcriptome profiling. The microarray technology has in contrast a long track record, but may suffer from issues related to background fluorescence and non-specific hybridization. The two technologies have been compare...
ORGANISM(S): Streptococcus thermophilus 
2012-06-10 | E-GEOD-34477 | biostudies-arrayexpress
MetabolomicsPreterm birth is associated with xenobiotics and predicted by the vaginal metabolome
Spontaneous preterm birth (sPTB) is a leading cause of maternal and neonatal morbidity and mortality, yet its prevention and early risk stratification are limited. Previous investigations have suggested that vaginal microbes and metabolites may be implicated in sPTB. Here we performed untargeted met...
2022-11-21 | MTBLS702 | MetaboLights
MetabolomicsMulti-omics analysis reveals microbiota-metabolite crosstalk in MASLD pathogenesis in a non-obese murine model

The rising global prevalence of metabolic dysfunction-associated steatotic liver disease (MASLD), including its severe form metabolic dysfunction-associated steatohepatitis (MASH), underscores the urgency to elucidate its pathophysiology. To investigate key metabolic interactions central to MASLD...

2026-03-13 | MTBLS14048 | MetaboLights
UnknownOperando Fe dissolution in Fe-N-C electrocatalysts during acidic oxygen reduction: impact of local pH change.
Not available
S-EPMC11348952 | biostudies-literature
TranscriptomicsB-cell tumor development in Tet2-deficient mice
The TET2 gene encodes an α-ketoglutarate-dependent dioxygenase able to oxidize 5-methylcytosine into 5-hydroxymethylcytosine, which is a step toward active DNA demethylation. TET2 is frequently mutated in myeloid malignancies but also in B- and T-cell malignancies. TET2 somatic mutations are also id...
ORGANISM(S): Mus musculus 
2019-12-12 | E-MTAB-8501 | biostudies-arrayexpress
UnknownSex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.
Not available
S-EPMC8458480 | biostudies-literature
UnknownReconstructing evolutionary trajectories of mutation signature activities in cancer using TrackSig.
Not available
S-EPMC7002414 | biostudies-literature
UnknownCTCF variants in 39 individuals with a variable neurodevelopmental disorder broaden the mutational and clinical spectrum.
Not available
S-EPMC6892744 | biostudies-literature
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