Sort   by:  
 Page size 
TranscriptomicsTranscription profiling of wild type and BOLITA over-expressing Arabidopisis leaves
Comparison of BOLITA mutant leaves (gain-of-function mutant) vs. wild type leaves, grown in the same conditions. The BOLITA (BOL) gene (At1g24590), an AP2/ERF transcription factor, was characterized with the help of an activation tag mutant and overexpression lines in Arabidopsis and tobacco. The l...
ORGANISM(S): Arabidopsis thaliana 
2006-08-04 | E-MEXP-809 | biostudies-arrayexpress
TranscriptomicsEffects of drought on gene expression in Maize reproductive and leaf meristem tissue revealed by RNA-seq
Purpose: To study the effects of drought at the transcriptomic level on two different actively dividing maize tissue: the ovaries, and the leaf meristem Methods: The Illumina reads were mapped to the maize B73 reference genome using Tophat followed by transcriptome reconstruction using Cufflinks. T...
ORGANISM(S): Zea mays 
2012-08-14 | E-GEOD-40070 | biostudies-arrayexpress
TranscriptomicsA resource for systems analysis of transcriptional modules involved in drought response in rice
The severity of impact of drought on crops is contingent on the developmental stage of the plant, with the most sensitive stage being the reproductive stage. Hence, gene expression profiling has been used to understanding drought response and resistance mechanism in rice. Here we present drought tra...
ORGANISM(S): Oryza sativa Japonica Group 
2016-07-20 | E-GEOD-81253 | biostudies-arrayexpress
TranscriptomicsGene expression changes in response to drought stress in Arabidopsis reveal early responses leading to acclimation in plant growth
Plant drought stress response and resistance are complex biological processes that merit systems-level analyses to dissect drought stress encountered by crops in the field. We have used gene expression profiling of Arabidopsis plants subjected to a controlled, sublethal, moderate drought (mDr) treat...
ORGANISM(S): Arabidopsis thaliana 
2010-10-01 | E-GEOD-24177 | biostudies-arrayexpress
TranscriptomicsCoordinated regulation of photosynthesis in rice increases yield and tolerance to environmental stress.
Plants capture solar energy and atmospheric carbon dioxide (CO2) through photosynthesis, which is the primary component of crop yield, and needs to be increased considerably to meet the growing global demand for food. Environmental stresses, which are increasing with climate change, adversely affect...
ORGANISM(S): Oryza sativa Japonica Group 
2014-08-30 | E-GEOD-60936 | biostudies-arrayexpress
TranscriptomicsCoordinated activation of cellulose and repression of lignin biosynthesis pathways in rice
Cellulose from plant biomass is the largest renewable energy resource of carbon fixed from the atmosphere, which can be converted into fermentable sugars for production into ethanol. However, the cellulose present as lignocellulosic biomass is embedded in a hemicellulose and lignin matrix from which...
ORGANISM(S): Oryza sativa Japonica Group 
2010-12-25 | E-GEOD-26092 | biostudies-arrayexpress
TranscriptomicsGenome-wide transcriptome analysis of rice in response to controlled drought stress at vegetative
In this study, genome-wide transcriptome profiling was used to understand molecular genetic mechanism of drought tolerance in rice. Illumina High-Seq 2000 platform was used for sequencing RNA from leaf tissue of rice plants exposed to controlled drought stress and well-watered conditions. The differ...
ORGANISM(S): Oryza sativa Japonica Group 
2015-01-16 | E-GEOD-65022 | biostudies-arrayexpress
TranscriptomicsTranscriptome analysis of Oshsfa2e mutant plants under controlled drought stress and well-watered conditions at vegetative stage
Heat shock factors (Hsfs) are known to regulate heat and drought stress response by controlling the expression of heat shock proteins and oxidative stress responsive genes. Loss-of-function of OsHSFA2e gene resulted in increased sensitivity of rice plants to drought and heat stress. To identify the ...
ORGANISM(S): Oryza sativa Japonica Group 
2015-01-16 | E-GEOD-65025 | biostudies-arrayexpress
TranscriptomicsTranscriptome analysis of Osbhlh148 mutant plants under controlled drought stress and well-watered conditions at vegetative stage
The members of bHLH transcription factor superfamily are known to play key role in plant development and abiotic stress response. Loss-of-function of OsbHLH148 gene resulted in increased sensitivity of rice plants to drought stress. To identify the targets of OsbHLH148 and dissect the drought stress...
ORGANISM(S): Oryza sativa Japonica Group 
2015-01-16 | E-GEOD-65024 | biostudies-arrayexpress
ProteomicsRe-analysis of: ‘CSF proteome mapping: Human cerebrospinal fluid LC-MS/MS, Part 2’ (PXD000652) to demonstrate the ProteoAnnotator software for mapping identifications to Ensembl genomes
We have performed a re-analysis of PXD000652 - a human proteome CSF fluid sample, originally queried versus UniProt. We have used our ProteoAnnotator package to re-search the data against Ensembl Human build 76 to demonstrate the capability of the pipeline to perform genome mapping on a large scale.
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
MSV000080193 | MassIVE
Sort   by:  
 Page size