Pereira M M - OmicsDI

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Unknown (5280)
Proteomics (148)
Transcriptomics (123)
Metabolomics (60)
Genomics (36)
Models (4)

Organisms

Aerococcus urinae NBRC 15544 = CCUG 36881 (122)
Andropogon gerardi (122)
Bacteria (122)
Canis lupus familiaris (122)
Cnidaria (122)
Homo sapiens (75)
Mus musculus (19)
Saccharomyces cerevisiae (12)
Arabidopsis thaliana (8)
Medicago truncatula (4)
Moniliophthora perniciosa (3)
Oryza sativa Japonica Group (3)
Rattus norvegicus (3)
Danio rerio (3)
Squalius pyrenaicus (2)
Micrococcus luteus NCTC 2665 (2)
Neisseria gonorrhoeae (1)
Squalius alburnoides (1)
Pyrus communis (1)
Enchytraeus albidus (1)
Salmonella enterica (1)
Theobroma cacao (1)
Schistosoma mansoni (1)
Zea mays (1)
Paracoccidioides brasiliensis (1)
Oncorhynchus mykiss (1)
Candida albicans (1)
Drosophila melanogaster (1)
Ardisia guianensis (1)
Pseudomonas putida KT2440 (1)

Organisms

Tigriopus californicus (1)
Micrococcus luteus NCTC 2665 (1)
Homo sapiens (1)

Repository

biostudies-arrayexpress (127)
pride (122)
GNPS (46)
EGA (27)
MassIVE (24)
MetaboLights (14)
BioModels (4)
ENA (4)
geo (1)
PanoramaPublic (1)
PAXDB (1)

Tissue

Cell culture (27)
Epithelial cell (8)
Brain (7)
Stem cell (6)
Bone marrow (5)
Skeletal muscle (5)
Blood serum (4)
Heart (4)
Lung (4)
Monocyte (4)
Plant cell (4)
Blood (3)
Blood cell (3)
Fungal cell (3)
Leaf (3)
Pancreas (3)
Fibroblast (2)
Liver (2)
Macrophage (2)
Photosynthetic cell (2)
Root (2)
Urine (2)
Venom (2)
Whole body (2)
Adipose tissue (1)
Astrocyte (1)
B cell (1)
Blood plasma (1)
Bone (1)
HeLa cell (1)

Disease

Acute leukemia (5)
Pancreatic ductal adenocarcinoma (5)
COVID-19 (4)
Glioblastoma (3)
Paracoccidioidomycosis (3)
Breast cancer (2)
Disease free (2)
Prostate adenocarcinoma (2)
Severe acute respiratory syndrome (2)
Tubular aggregate myopathy 1 (2)
Tubular aggregate myopathy 2 (2)
Polycythemia vera (1)
Pilocytic astrocytoma (1)
Alzheimer's disease (1)
Becker muscular dystrophy (1)
Bone osteosarcoma (1)
Brain glioblastoma multiforme (1)
Bronchopulmonary dysplasia (1)
Cardiovascular system disease (1)
Central precocious puberty (1)
Cervix carcinoma (1)
Chagas disease (1)
Congenital heart disease (1)
Duchenne muscular dystrophy (1)
Heart disease (1)
Hypertrophic cardiomyopathy (1)
Lewy body dementia (1)
Long COVID (1)
Mixed disorder as reaction to stress (1)
Mucopolysaccharidosis IVA (1)

Technology Type

Mass Spectrometry (122)
Shotgun proteomics (71)
Data-dependent acquisition (13)
Bottom-up proteomics (12)
Mass spectrometry (11)
Affinity purification coupled with mass spectrometry proteomics (9)
Illumina 15K (8)
Data-independent acquisition (7)
MSE (7)
Gel-based experiment (6)
SWATH MS (6)
Top-down proteomics (5)
Mass spectrometry assay (2)
HDMSE (2)
Infinium Omni2.5M (1)
NMR spectroscopy (1)
Mass spectrometry imaging (1)

Instrument Platform

LTQ Orbitrap Velos (35)
GC-MS (12)
GC MS (10)
Illumina NovaSeq 6000 (4)
Liquid Chromatography MS - positive - reverse phase (4)
Illumina HiSeq 2500 (3)
LTQ Orbitrap (3)
Gas Chromatography MS - (3)
Gas Chromatography MS - positive (3)
Liquid Chromatography MS - negative - reverse phase (3)
Agilent 7890A GC with 5975C inert XL MSD (2)
Gas Chromatography MS - Positive (GC-MS (Positive)) (2)
Liquid Chromatography MS - (2)
Illumina Hybridisation Oven (1)
Illumina iScan (1)
Illumina NovaSeq X (1)
DNBSEQ-G400 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 4000 (1)
6110 Quadrupole LC/MS (1)
Agilent GC-MS (1)
Agilent GC/MSD 5975C (1)
Autoflex (1)
LTQ Velos (1)
MicrOTOF-Q (1)
Microflex (1)
Orbitrap Exploris 480 (1)
Q Exactive HF-X (1)
Agilent 6550 iFunnel Accurate-Mass UHPLC-QTOFMSMS (negative mode) (1)
Agilent 6550 iFunnel Accurate-Mass UHPLC-QTOFMSMS (positive mode) (1)

Publication Date

2016 (34)
2023 (26)
2018 (25)
2013 (24)
2024 (21)
2015 (19)
2019 (19)
2022 (18)
2025 (17)
2017 (17)
2014 (17)
2010 (17)
2012 (16)
2026 (14)
2021 (14)
2020 (13)
2008 (10)
2011 (7)
2009 (4)
2007 (1)
2006 (1)
2004 (1)

UNIPROT ID/AC

P47113 (3)
P38987 (3)
89462.XP_006040351.1 (1)
89462.XP_006040625.1 (1)
89462.XP_006041235.1 (1)
89462.XP_006041616.1 (1)
89462.XP_006041942.1 (1)
89462.XP_006041949.1 (1)
89462.XP_006042170.1 (1)
89462.XP_006042233.1 (1)
89462.XP_006042264.1 (1)
89462.XP_006042334.1 (1)
89462.XP_006042420.1 (1)
89462.XP_006042628.1 (1)
89462.XP_006042816.1 (1)
89462.XP_006042870.1 (1)
89462.XP_006042923.1 (1)
89462.XP_006043252.1 (1)
89462.XP_006043597.1 (1)
89462.XP_006044210.1 (1)
89462.XP_006044367.1 (1)
89462.XP_006045039.1 (1)
89462.XP_006045164.1 (1)
89462.XP_006045255.1 (1)
89462.XP_006045325.1 (1)
89462.XP_006045573.1 (1)
89462.XP_006045767.1 (1)
89462.XP_006046028.1 (1)
89462.XP_006046104.1 (1)
89462.XP_006046159.1 (1)

CHEBI ID

CHEBI:18012 (10)
CHEBI:30769 (9)
CHEBI:6650 (8)
CHEBI:15428 (7)
CHEBI:15741 (7)
CHEBI:30915 (7)
CHEBI:15756 (7)
CHEBI:15996 (6)
CHEBI:17234 (6)
CHEBI:16958 (6)
CHEBI:17568 (6)
CHEBI:29016 (6)
CHEBI:32816 (6)
CHEBI:17992 (5)
CHEBI:17822 (5)
CHEBI:26271 (5)
CHEBI:25094 (5)
CHEBI:22660 (5)
CHEBI:28300 (5)
CHEBI:28875 (5)
CHEBI:17754 (5)
CHEBI:17154 (5)
CHEBI:16335 (5)
CHEBI:7916 (5)
CHEBI:18183 (5)
CHEBI:16027 (5)
CHEBI:28716 (5)
CHEBI:42111 (4)
CHEBI:17552 (3)
CHEBI:33282 (1)

Metabolite Name

Citric acid (4)
Succinic acid (4)
Fumaric acid (4)
Malic acid (4)
Pyruvic acid (3)
Taurodeoxycholic acid (3)
Glycine (3)
Ursodeoxycholic acid (3)
Taurocholic acid (3)
Cholic acid (3)
Methyl oleate (2)
Ribitol (2)
Phenol (2)
Glycodeoxycholic acid (2)
Chenodeoxycholic acid (2)
2-Methylglutaric acid (2)
Arginine (2)
Adenosine (2)
Glycerol (2)
Phosphoric acid (2)
Sucrose (2)
Glycolic acid (2)
Myo-inositol (2)
Uracil (2)
Indoxyl sulfate (2)
Sphingosine 1-phosphate (2)
Ornithine (2)
2-Hydroxyhexadecanoic acid (2)
Elaidic acid (2)
Deoxycholic acid (2)

First Public Date

2024 (1)
2019 (1)
2015 (1)
2014 (1)

Modelling Approach

Ordinary differential equation model (3)
Computational model (1)

Lab affiliation

Federal University of Goias (3)
Goethe-Universität Frankfurt, Georg-Speyer-Haus, Paul-Ehrlich-Str. 42-44, Frankfurt am Main, GERMANY (3)
Biochemistry and molecular biology department, Universidade Federal de Goias, Brazil (2)
CRUK -CRUK Scotland nstitute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (2)
ITQB-NOVA, Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Av. Da República, 2780-157 Oeiras, Portugal;iBET, Instituto de Biologia Experimental e Tecnológica, Apartado 12, 2780-901, Oeiras , Portugal (2)
PI in de Department of Molecular Biology in Centro de Biología Molecular ‘“Severo Ochoa’” (CBMSO)- Universidad Autónoma de Madrid (UAM), leading the project "Role of mitochondrial bioenergetics in skeletal muscle secretrome during exercise and pathology". (2)
Professor, Department of Biology and Biological Engineering, Chalmers University of Technology, SE-41296 Gothenburg, Sweden; Wallenberg Center for Protein Research, Chalmers University of Technology, SE-41296 Gothenburg, Sweden; Novo Nordisk Foundation Center for Biosustainability, Chalmers University of Technology, SE-41296 Gothenburg, Sweden; Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, DK-2800 Lyngby, Denmark (2)
The University of Melbourne (2)
1 Department of Genetics, Harvard Medical School, Boston, MA 02115 (1)
1- i3S - Instituto de Investigação e Inovação em Saúde,Universidade do Porto, Portugal 2- IBMC - Instituto de Biologia Celular e Molecular, Universidade do Porto, Portugal 3- ICBAS - Instituto de Ciências Biomédicas Abel Salazar, Universidade do Porto, Portugal (1)
1. Departamento de Biología Molecular, Centro de Biología Molecular ‘“Severo Ochoa’” (CBMSO), c/ Nicolás Cabrera 1, Universidad Autónoma de Madrid, Madrid, Spain. 2. Centro de Investigación Biomédica en red de Enfermedades Raras (CIBERER), ISCIII, Madrid, Spain. 3. Instituto de Investigación Hospital 12 de Octubre, i+12, Universidad Autónoma de Madrid, Madrid, Spain. (1)
1. Departamento de Biología Molecular, Centro de Biología Molecular ‘“Severo Ochoa’” (CBMSO), c/ Nicolás Cabrera 1, Universidad Autónoma de Madrid, Madrid, Spain. 2. Centro de Investigación Biomédica en red de Enfermedades Raras (CIBERER), ISCIII, Madrid, Spain. 3. Instituto de Investigación Hospital 12 de Octubre, i+12, Universidad Autónoma de Madrid, Madrid, Spain. (lab head) (1)
1. Garvan Institute of Medical Research, Cancer Ecosystems Program, and The Kinghorn Cancer Centre, Darlinghurst, Sydney, New South Wales, Australia. 2. School of Clinical Medicine, Faculty of Medicine and Health, University of New South Wales (UNSW), Kensington, Sydney, New South Wales, Australia. (1)
1Center for Advanced Vision Science, University of Virginia School of Medicine, Charlottesville, Virginia, USA (1)
1Neonatal Research, Murdoch Children’s Research Institute, Parkville, Australia 2Department of Paediatrics, University of Melbourne, Melbourne, Australia (1)
AQUACEN - National Reference Laboratory for Aquatic Animal Diseases (1)
Analytical Biochemistry and Proteomics Unit, Institut Pasteur de Montevideo & Instituto de Investigaciones Biológicas Clemente Estable. (1)
Analytical Chemistry Lab Fondazione Istituto Italiano di Tecnologia Via Morego 30, 16163 Genova Italy (1)
Astrazeneca (1)
Australian Research Council Centre of Excellence in Plant Energy Biology, School of Molecular Sciences, The University of Western Australia, Crawley, WA 6009, Australia (1)
Baker Heart & Diabetes Institute and Murdoch Childrens Research Institute (pmpf@unimelb.edu.au) (1)
Biology Departament. Federal University of Ceara. Brasil, Ceara. (1)
CNC-Center for Neuroscience and Cell Biology, University of Coimbra, 3004-517 Coimbra, Portugal; Biocant, Biotechnology Innovation Center, 3060-197 Cantanhede, Portugal; (1)
CNIO (1)
CRUK -CRUK Scotland Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (1)
Cell Biology of Bacterial Infections, IBMC, i3S - Instituto de Investigação e Inovação em Saúde, Universidade do Porto, Portugal (1)
Center for Microbial Ecology and Technology (CMET), Faculty of Bioscience Engineering Ghent University, Coupure Links 653, 9000 Ghent, Belgium, Center for Advanced Process Technology for Urban Resource recovery (CAPTURE), Frieda Saeysstraat 1, 9052 Ghent, Belgium (1)
Center for Network Systems Biology, Department of Biochemistry, Boston University School of Medicine, Boston, MA, USA (1)
Center for Neuroscience and Cell Biology – University of Coimbra (1)
Center for Technological Development in Health (CDTS) - FIOCRUZ, Brazil. (1)

IsPrivate

False (4)

Submitter Keywords

Ersilia (1)
Machine Learning Model (1)

Study type

Transcription profiling by array (75)
RNA-seq of coding RNA (15)
Unknown experiment type (7)
Comparative genomic hybridization by array (7)
ChIP-seq (5)
ChIP-chip by tiling array (3)
ChIP-chip by array (3)
Methylation profiling by array (3)
RNA-seq of non coding RNA (2)
Transcription profiling by SAGE (1)
Genotyping by array (1)
Spatial transcriptomics by high-throughput sequencing (1)
Single nucleus RNA sequencing (1)
MicroRNA profiling by array (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of total RNA (1)

Release Date

2022 (727)
2023 (666)
2025 (654)
2021 (595)
2024 (568)
2020 (436)
2019 (333)
2018 (262)
2017 (206)
2016 (174)
2015 (148)
2014 (131)
2026 (101)
2013 (98)
2012 (71)
2011 (61)
2010 (49)
2009 (46)
2008 (36)
2007 (14)
2006 (8)
2004 (8)
2000 (4)
2002 (3)
1999 (3)
2001 (2)
2005 (1)
2003 (1)

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Genomic insights into the antimicrobial resistance and virulence of Helicobacter pylori isolates from gastritis patients in Pereira, Colombia.

Not available

S-EPMC11382513 | biostudies-literature

Transcription differences of Micrococcus luteus at late-exponential and stationary phase

Investigation of transcriptomic changes in M.luteus at 12hrs and 24hrs. Differences in fatty acid profiles of M. luteus at exponential and stationary phase is attributed to transcriptional changes of branched amino acid biosynthesis and degradation genes. This study is described by Pereira, J.H., E...

ORGANISM(S): Micrococcus luteus NCTC 2665

2012-09-24 | E-GEOD-38040 | biostudies-arrayexpress

Synthesis of M-Ag₃PO₄, (M = Se, Ag, Ta) Nanoparticles and Their Antibacterial and Cytotoxicity Study.

Not available

S-EPMC9569642 | biostudies-literature

First report of the ceftazidimase CTX-M-19 in South America.

Not available

S-EPMC4184694 | biostudies-literature

Cell- and tissue-specific transcriptome analyses of Medicago truncatula root nodules

We used laser-capture microdissection (LCM) to isolate specific cells from the Medicago truncatula nodule meristem (M), the distal infection (DIZ), the proximal infection zone (PIZ), infected cells (IC) and uninfected cells (UIC) from the fixation zone. Based on Medicago GeneChips, we identified the...

ORGANISM(S): Medicago truncatula

2013-05-29 | E-GEOD-43354 | biostudies-arrayexpress

Pao Pereira Extract Attenuates Testosterone-Induced Benign Prostatic Hyperplasia in Rats by inhibiting 5α-Reductase.

Not available

S-EPMC6928012 | biostudies-literature

FKBP5 expression in human adipose tissue increases following dexamethasone exposure and is associated with insulin resistance.

Glucocorticoid excess is linked to central obesity, adipose tissue insulin resistance and type 2 diabetes mellitus. The aim of our study was to investigate the effects of dexamethasone on gene expression in human subcutaneous and omental adipose tissue, in order to identify potential novel mechanism...

ORGANISM(S): Homo sapiens

2014-08-18 | E-GEOD-42902 | biostudies-arrayexpress

Spc2 modulates substrate- and cleavage site-selection in the yeast signal peptidase complex

LC-MS/MS data associated with: "Yeonji Chung, Chewon Yim, Gilberto P. Pereira, Sungjoon Son, Lisbeth R. Kjoelbye, Lauren E. Mazurkiewicz, Amy M. Weeks, Friedrich Foerster, Gunnar von Heijne, Paulo C.T. Souza, Hyun Kim; Spc2 modulates substrate- and cleavage site-selection in the yeast signal peptida...

ORGANISM(S): Saccharomyces Cerevisiae (ncbitaxon:4932)

2025-08-05 | MSV000098726 | MassIVE

Proteomic profile of culture filtrate from the Brazilian vaccine strain Mycobacterium bovis BCG Moreau compared to M. bovis BCG Pasteur.

Not available

S-EPMC3094199 | biostudies-literature

Whole-exome analysis of foetal autopsy tissue reveals a frameshift mutation in OBSL1, consistent with a diagnosis of 3-M Syndrome.

Not available

S-EPMC4315153 | biostudies-literature

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