Perseus. - OmicsDI

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Proteomics (4812)
Unknown (96)
Metabolomics (5)
Genomics (4)
Transcriptomics (1)

Organisms

Homo sapiens (4792)
Mus musculus (4792)
Allexis (4790)
Arabidopsis thaliana (4790)
Listeria monocytogenes (4790)
Rattus norvegicus (4790)
Saccharomyces cerevisiae (4790)
Schizosaccharomyces pombe (4790)
Entamoeba histolytica HM-1:IMSS-A (4789)
Escherichia coli (4789)
Medicago truncatula (4789)
Meleagris gallopavo (4789)
Methylohalobius crimeensis 10Ki (4789)
Sinorhizobium meliloti BL225C (4789)
Solanum tuberosum (4789)
Staphylococcus aureus (4789)
Sus scrofa domesticus (4789)
Zea mays (4789)
Bos taurus (4788)
Callinectes sapidus (4788)
Drosophila melanogaster (4788)
Leishmania major strain Friedlin (4788)
Pseudomonas fluorescens WH6 (4787)
Trypanosoma cruzi (4787)
Homo sapiens (6)
Mus musculus (3)
Drosophila melanogaster (1)
Escherichia coli (1)
Saccharomyces cerevisiae (1)
cellular organisms (1)

Organisms

Homo sapiens (1)

Repository

pride (4793)
MassIVE (12)
MetaboLights (5)
biostudies-arrayexpress (4)
iProX (4)
jPOST (3)
ENA (1)

Tissue

Cell culture (1079)
Epithelial cell (330)
Brain (257)
Permanent cell line cell (217)
Liver (120)
Fibroblast (114)
Kidney (110)
Blood (108)
Plant cell (104)
Heart (88)
Blood plasma (87)
Cell suspension culture (86)
Embryonic stem cell (85)
Lung (77)
Colon (76)
Leaf (76)
Macrophage (75)
HeLa cell (69)
T cell (68)
Blood cell (66)
Whole body (64)
Hepatocyte (59)
Stem cell (59)
B cell (58)
Bone marrow (48)
Primary cell (47)
Blood serum (45)
Root (41)
Embryo (39)
Skin (38)

Disease

Disease free (117)
Breast cancer (113)
Colon cancer (91)
Acute leukemia (56)
Cervix carcinoma (35)
Malignant neoplasm of ovary (33)
Melanoma (33)
Parkinson's disease (33)
Alzheimer's disease (31)
Amyotrophic lateral sclerosis (27)
Cardiovascular system disease (27)
Brain cancer (23)
Lymphoma (22)
Prostate adenocarcinoma (20)
Type 2 diabetes mellitus (20)
Neuroblastoma (18)
Brain glioblastoma multiforme (16)
Pancreatic cancer (16)
Glioblastoma (14)
Lung cancer (14)
Pancreatic ductal adenocarcinoma (14)
Hepatocellular carcinoma (13)
Plasmodium falciparum malaria (13)
Tuberculosis (13)
Non-small cell lung carcinoma (11)
Osteosarcoma (11)
Lung adenocarcinoma (10)
Mixed disorder as reaction to stress (10)
Multiple myeloma (10)
Wounds and Injuries (10)

Technology Type

Mass Spectrometry (4793)
Shotgun proteomics (2787)
Bottom-up proteomics (836)
Affinity purification coupled with mass spectrometry proteomics (825)
Data-dependent acquisition (536)
Data-independent acquisition (276)
Gel-based experiment (211)
Top-down proteomics (133)
SWATH MS (112)
SRM/MRM (34)
Affinity proteomics (33)
Chemical cross-linking coupled with mass spectrometry proteomics (22)
All-ion fragmentation (21)
DiaPASEF (16)
Proteogenomics (7)
Metaproteomics (6)
Mass spectrometry (5)
HDMSE (5)
MSE (4)
Mass spectrometry imaging (4)
Immunopeptidomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (4)
Orbitrap Fusion (3)
Liquid Chromatography MS - negative - reverse phase (2)
Bruker Impact II Q-TOF (1)
LTQ Orbitrap (1)
LTQ Orbitrap Elite (1)
LTQ Orbitrap Velos (1)
Orbitrap Eclipse (1)
Orbitrap Exploris 240 (1)
Orbitrap Fusion Lumos (1)
Q Exactive (1)
Q-Exactive Plus Orbitrap mass spectrometer (1)
Velos Plus (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2025 (785)
2023 (679)
2022 (633)
2024 (629)
2021 (529)
2026 (402)
2020 (400)
2018 (261)
2019 (259)
2017 (112)
2016 (83)
2015 (29)
2014 (11)
2013 (5)
2012 (2)

CHEBI ID

CHEBI:17822 (3)
CHEBI:18237 (3)
CHEBI:18243 (3)
CHEBI:15940 (3)
CHEBI:18183 (3)
CHEBI:27897 (3)
CHEBI:16813 (3)
CHEBI:177330 (2)
CHEBI:22901 (2)
CHEBI:170015 (2)
CHEBI:81927 (2)
CHEBI:83499 (2)
CHEBI:135526 (2)
CHEBI:34665 (2)
CHEBI:16796 (2)
CHEBI:18723 (2)
CHEBI:34283 (2)
CHEBI:2705 (2)
CHEBI:23965 (2)
CHEBI:32643 (2)
CHEBI:68443 (2)
CHEBI:28819 (2)
CHEBI:39561 (2)
CHEBI:23053 (2)
CHEBI:17521 (2)
CHEBI:16691 (2)
CHEBI:16974 (2)
CHEBI:17263 (2)
CHEBI:28238 (2)
CHEBI:4828 (2)

Metabolite Name

Dopamine (3)
Serine (3)
Tryptophan (3)
Valin (2)
Threonin (2)
Cycloleucylprolyl (2)
Climbazole (2)
Caffeine-D9 (2)
AFMU (2)
Indole-3-carbaldehyde (2)
Imidazoleacetic Acid (2)
N-Acetyl-DL-serine (2)
Melatonine (2)
Debrisoquine (2)
Methionine Sulfoxide (2)
Quinic Acid (2)
Naringin (2)
Octocrylene (2)
Enilconazole (2)
Oxybenzone (2)
Anatabine (2)
Bisphenol S (2)
Chlorogenic Acid (2)
Prolinamide (2)
3-Phenyllactic acid (2)
Aspartic Acid (2)
Kojic Acid (2)
Pyroglutamic Acid (2)
Cetrimonium (2)
Serotonine (2)

First Public Date

2013 (1)

Modification

2x(15)N labeled L-lysine (11)
4x(15)N labeled L-arginine (8)
N6 (6)
4-tetrahydrothiazine-3-carboxylic acid (3)
N6-dimethyl-L-lysine (3)
4 (2)
+3amu) (1)
-17.026549 (1)
-18.010565 (1)
15.99491 (1)
15.994915 (1)
42.010565 (1)
4x(2)H labeled dimethylated L-lysine (1)
4x(2)H labeled dimethylated residue (1)
57.02146 (1)
57.021464 (1)
6-dioxaoctanediamine derivatized cysteine (1)
6x(2)H labeled dimethylated L-arginine (1)
Not available (1)

Study type

ChIP-seq (3)
RNA-seq of coding RNA (1)

Release Date

2025 (19)
2023 (12)
2022 (11)
2024 (9)
2021 (8)
2020 (8)
2019 (7)
2016 (5)
2017 (4)
2012 (3)
2018 (3)
2015 (2)
2014 (2)
2011 (2)
2013 (1)
2026 (1)
2010 (1)
2009 (1)
2005 (1)

Lab affiliation

Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (45)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (30)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (18)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (18)
The University of Melbourne (17)
Head of Proteomics (13)
Department of Glycobiology, Institute of Chemistry, Slovak Academy of Sciences (12)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne 3000, Australia (12)
University of Edinburgh (10)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for infection and immunity, Melbourne, 3000, Australia (8)
University of the Balearic Islands (8)
CECAD, University of Cologne (7)
CNIO (7)
CRUK Scotland Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (7)
Farnusch Kaschani, Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (7)
Proteomics facility, Central Science Laboratory, University of Tasmania (7)
The Francis Crick Institute (7)
UMR 7367 CNRS-UL IMoPA Biopôle de l'Université de Lorraine Campus Brabois-Santé 9 avenue de la forêt de Haye 54505 Vandoeuvre-les-Nancy FRANCE (7)
University of Bergen (7)
CRUK Beatson Institute (6)
DIVAS, University of Milan (6)
Department of Cellular & Molecular Physiology, Yale School of Medicine, New Haven, CT 06520, USA. Systems Biology Institute, Yale University, New Haven, CT 06516, USA (6)
Department of Molecular Ecology MPI for Marine Microbiology Celsiusstr. 1 D-28359 Bremen Germany (6)
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, 50463, Republic of Korea (6)
Ghent University, Department of Plant Biotechnology and Bioinformatics, Technologiepark 71, 9052 Ghent, Belgium VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium (6)
Imperial College London (6)
Indiana University School of Medicine (6)
Institute for Cardiovascular Regeneration, Centre for Molecular Medicine, Goethe University Frankfurt am Main, Germany (6)
Mass Spectrometry/Proteomics Facility, Netherlands Cancer Institute, Amsterdam, Netherlands. (6)
Max Planck Institute of Biochemistry (6)

Tags

xref:PubMed:23907384 (1)

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PERSEUS: an interactive and intuitive web-based tool for pedigree visualization.

Not available

S-EPMC10898331 | biostudies-literature

Identification of SF-1 genomic binding sites in conditions of basal and increased dosage in the H295R adrenocortical tumor cell line

The goal of this study was to identify genomic binding sites of the SF-1 nuclear receptor under conditions of basal and increased dosage in the H295R human adrenocortical tumor cell line. 14 samples: input DNA (2 replicates) - SF-1 ChIP Millipore antibody basal SF-1 dosage (3 replicates) - SF-1 ChIP...

ORGANISM(S): Homo sapiens

2013-08-01 | E-GEOD-44220 | biostudies-arrayexpress

PERSEUS-IT 24-month analysis: a prospective observational study to assess the effectiveness of intravitreal aflibercept in routine clinical practice in Italy in patients with neovascular age-related macular degeneration.

Not available

S-EPMC9477902 | biostudies-literature

A prospective evaluation of the safety and efficacy of the TAXUS Element paclitaxel-eluting coronary stent system for the treatment of de novo coronary artery lesions: design and statistical methods of the PERSEUS clinical program.

Not available

S-EPMC2826324 | biostudies-literature

A Network Module for the Perseus Software for Computational Proteomics Facilitates Proteome Interaction Graph Analysis.

Not available

S-EPMC6578358 | biostudies-literature

Cefiderocol treatment for patients infected by Stenotrophomonas maltophilia, Burkholderia cepacia complex and Achromobacter spp.: subgroup analysis from the PERSEUS study.