Pertussis - OmicsDI

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Unknown (2041)
Genomics (424)
Transcriptomics (138)
Proteomics (45)
Metabolomics (5)
Models (4)
Other (3)

Organisms

Mus musculus (53)
Homo sapiens (45)
Bordetella pertussis (37)
Andropogon gerardi (34)
Bacteria (34)
Bordetella bronchiseptica (15)
Respiratory syncytial virus (3)
Streptococcus sp. 'group B' (3)
Yellow fever virus (3)
Onchocerca volvulus (3)
Dengue virus (3)
Human immunodeficiency virus (3)
Chikungunya virus (3)
Zika virus (3)
Plasmodium falciparum (3)
Mycobacterium tuberculosis (3)
Staphylococcus aureus (3)
Bordetella parapertussis (2)
Rattus norvegicus (2)
Bordetella pertussis Tohama I (2)
Influenza A virus (1)
Haemophilus influenzae R2866 (1)
Rattus rattus (1)
Bordetella pertussis B1920 (1)
Bordetella pertussis B1917 (1)
Sus scrofa domesticus (1)
synthetic construct (1)
Mycolicibacterium smegmatis (1)
Macaca mulatta (1)
Escherichia coli (1)

Organisms

Bordetella pertussis (86)
Mus musculus (43)
Homo sapiens (26)
Bordetella pertussis Tohama I (4)
Bordetella bronchiseptica (3)
Rattus norvegicus (3)
Bordetella pertussis CS (2)
Bordetella pertussis H973 (2)
Bordetella bronchiseptica MO211 (2)
Bordetella parapertussis (2)
Bordetella parapertussis 12822 (1)
Bordetella bronchiseptica M85/00/2 (1)
Bordetella bronchiseptica M435/02/3 (1)
Advenella kashmirensis WT001 (1)
Bordetella pertussis CS-1 (1)
Bordetella bronchiseptica RB50 (1)
Bordetella pertussis B1920 (1)
Bordetella pertussis B1917 (1)
Bordetella pertussis B1834 (1)
Bordetella pertussis B1831 (1)
Bordetella pertussis B1193 (1)
Bordetella pertussis B0558 (1)
Bordetella pertussis 1996168 (1)
Bordetella pertussis H784 (1)
Bordetella pertussis CHLA-25 (1)
Bordetella pertussis 2370872 (1)
Bordetella bronchiseptica MBORD626 (1)
Bordetella bronchiseptica E006 (1)
Bordetella pertussis H934 (1)
Bordetella pertussis STO1-CHOC-0026 (1)

Repository

ENA (418)
biostudies-arrayexpress (74)
geo (73)
pride (34)
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Tissue

Cell culture (9)
Prokaryotic cell (4)
Macrophage (2)
Primary cell (2)
Bacterial protein (1)
Bone marrow (1)
Bronchial epithelial cell (1)
Bronchial epithelium (1)
Dendritic cell (1)
Epithelial cell (1)
Ganglionic layer of retina (1)
Nasal cavity epithelium (1)
Retina (1)
Spinal cord (1)

Disease

Pertussis (8)
Bordetella parapertussis whooping cough (4)
Bordetella pertussis infected (1)
Bordetella pertussis inoculated (1)
Normal (1)
Not Available (1)
Diphtheria (1)
Glaucoma (1)
Multiple sclerosis (1)
Tetanus (1)

Technology Type

Mass Spectrometry (34)
Shotgun proteomics (23)
Bottom-up proteomics (7)
Mass spectrometry (3)
Data-independent acquisition (3)
Mass spectrometry assay (2)
NMR spectroscopy (1)
All-ion fragmentation (1)
Gel-based experiment (1)
SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

Scanning hardware (15)
GenePix 4000B [Axon Instruments] (3)
Q Exactive (3)
NextSeq 500 (2)
Exactive (2)
Liquid Chromatography MS - negative - reverse-phase (2)
Microbeads (1)
GeneChip Instrument System (1)
Affymetrix mouse gene 1.0 ST arrays (1)
Agilent 2100 Bioanalyzer (1)
Illumina NovaSeq 6000 (1)
Instrument (1)
LTQ Orbitrap Velos (1)
SolariX (1)
Gas Chromatography MS - positive (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2025 (19)
2020 (18)
2006 (15)
2024 (12)
2008 (12)
2023 (12)
2015 (11)
2026 (10)
2011 (9)
2021 (9)
2022 (8)
2018 (7)
2017 (7)
2016 (7)
2014 (7)
2012 (7)
2009 (7)
2013 (6)
2007 (6)
2019 (4)
2010 (3)
2005 (2)

UNIPROT ID/AC

ACCA_BORPE (2)
ACP_BORPE (2)
AMPA_BORPE (2)
APT_BORPE (2)
ARGB_BORPE (2)
ARGC_BORPE (2)
ARGD1_BORPE (2)
ARGD2_BORPE (2)
ARGJ_BORPE (2)
ARLY_BORPE (2)
AROC_BORPE (2)
AROQ_BORPE (2)
ASSY_BORPE (2)
ATPA_BORPE (2)
ATPB_BORPE (2)
ATPD_BORPE (2)
ATPF_BORPE (2)
ATPG_BORPE (2)
BAMB_BORPE (2)
BFRD_BORPE (2)
BRKA_BORPE (2)
BVGA_BORPE (2)
BVGS_BORPE (2)
CATA_BORPE (2)
CH10_BORPE (2)
CH60_BORPE (2)
CLPB_BORPE (2)
CLPP_BORPE (2)
CLPX_BORPE (2)
COAD_BORPE (2)

CHEBI ID

CHEBI:75090 (1)
CHEBI:16016 (1)
CHEBI:17172 (1)
CHEBI:33508 (1)
CHEBI:17822 (1)
CHEBI:26271 (1)
CHEBI:25094 (1)
CHEBI:16856 (1)
CHEBI:18237 (1)
CHEBI:16040 (1)
CHEBI:22660 (1)
CHEBI:22653 (1)
CHEBI:27570 (1)
CHEBI:30751 (1)
CHEBI:18186 (1)
CHEBI:26986 (1)
CHEBI:22652 (1)
CHEBI:16811 (1)
CHEBI:17790 (1)
CHEBI:28300 (1)
CHEBI:16236 (1)
CHEBI:17824 (1)
CHEBI:16708 (1)
CHEBI:17748 (1)
CHEBI:24898 (1)
CHEBI:25017 (1)
CHEBI:15428 (1)
CHEBI:15741 (1)
CHEBI:28044 (1)
CHEBI:17242 (1)

Metabolite Name

Palmitic Acid (2)
Linoelaidic acid (2)
Myristoleic acid (2)
Valproic acid .beta.-d-glucuronide (1)
P-tolyl-.beta.-d-glucuronide (1)
N-oxyclozapine (1)
Losartancarboxaldehyde (1)
Licoisoflavone a (1)
Leukotriene b4 ethanolamide (1)
Benzoic acid ethyl ester (1)
Anthocyanidin base + 5o, 1meo, o-hex, o-hex-coumaroylhex (1)
9-hydroxyrisperidone (1)
3alpha,7beta,12alpha-trihydroxy-5beta-cholan-24-oic acid (1)
3-amino-1-propanol (1)
2-acetyl-3-methylpyrazine (1)
(s)-cotinine n-oxide (1)
(4r)-4-((1r,3s,5s,7r,9s,10s,12s,13r,14s,17r)-1,3,7,12-tetrahydroxy-10,13-dimethylhexadecahydro-1h-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
(-)-myrtenol (1)
.omega.-3 arachidonic acid (1)
N-oleoyl-d-erythro-sphinganine (1)
Iopamidol (1)
N-nitrosonornicotine (1)
Delta-tocopherol (1)
Dl-homocysteine (1)
.beta.-thujaplicin (1)
N,n-dimethylaniline (1)
Cis-jasmone (1)
Benzoic acid eugenyl ester (1)
.alpha.-L-Glu-L-Tyr (1)
Gln-met (1)

First Public Date

2013 (107)
2014 (45)
2025 (43)
2023 (30)
2024 (26)
2026 (25)
2020 (21)
2018 (21)
2022 (19)
2021 (19)
2019 (18)
2017 (14)
2015 (12)
2012 (9)
2016 (7)
2010 (2)

Modelling Approach

Ordinary differential equation model (2)
Constraint-based model (1)

Lab affiliation

University Medicine Greifswald (5)
Institute of Microbiology of the CAS, v. v. i. (4)
Institute of Microbiology - BioCeV, Academy of Sciences of the Czech Republic (2)
Academy of Sciences of the Czech Republic Institute of Microbiology, v.v.i. Prague, Czech Republic (1)
CSO, Bioaster, France (1)
Czech Academy of Sciences Institute of Microbiology Laboratory of Post-Transcriptional Control of Gene Expression (1)
Department Biologie, Professur für Mikrobiologie (lab head) (1)
Department Functional Proteomics Medizinisches Proteom-Center Ruhr-University Bochum Building ProDi Gesundheitscampus 4 44780 Bochum Germany (1)
Department of Functional Genomics, Institute for Genetics and Functional Genomics, University Medicine Greifswald, Germany (1)
Institute of Biomedicine University of Turku Kiinamyllynkatu 10 FI-20520 TURKU Finland (1)
Institute of Microbiology of the Czech Academy of Sciences, v.v.i., Videnska 1083, 142 20 Prague, Czech Republic (1)
Laboratory of Infection Biology Institute of Microbiology, v.v.i. The Czech Academy of Sciences (1)
Laboratory of Infection Biology, Institute of Microbiology of the Czech Academy of Sciences, Prague, Czech Republic (1)
Laboratory of Molecular Biology of Bacterial Pathogens, Institute of Microbiology of the Czech Academy of Sciences, Prague, Czech Republic (1)
Laboratory of Molecular Biology of Bacterial Pathogens, Institute of Microbiology, Czech Academy of Sciences (1)
Laboratory of Post-Transcriptional Control of Gene Expression Institute of Microbiology, v.v.i. Academy of Sciences of the Czech Republic Videnska 1083; Prague; Czech Republic Tel: +420 296 442 507 (1)
Laboratory of Post-Transcriptional Control of Gene Expression, Institute of Microbiology of the Czech Academy of Sciences, Czech Republic (1)
Laboratory of Post-Transcriptional Control of Gene Expression, Institute of Microbiology of the Czech Academy of Sciences, v.v.i. (1)
School of Biotechnology and Biomolecular Sciences, University of New South Wales (1)
School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, New South Wales, Australia (1)
School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, New South Wales, Australia (lab head) (1)
Shanghai university of Traditional Chinese Medicine (1)
The Institute of Microbiology of the Czech Academy of Sciences Head of Group Protein Structure Characterization by Advanced Mass Spectrometry (1)
Univ. Lille, CNRS, Inserm, CHU Lille, Institut Pasteur de Lille, US41 – UMS 2014 – PLBS, F-59000 Lille, France (1)
University Medicine Greifswald, Germany (1)
ZIK-FunGene Junior Research Group Applied Proteomics, University Medicine Greifswald, Greifswald, Germany (1)

IsPrivate

False (4)

Classification

bacteria (232)

Study type

Transcription profiling by array (49)
Comparative genomic hybridization by array (12)
RNA-seq of coding RNA (7)
Unknown experiment type (2)
RNA-seq of coding RNA from single cells (2)
ChIP-chip by array (1)
MicroRNA profiling by array (1)

Release Date

2021 (206)
2023 (185)
2022 (171)
2025 (168)
2020 (145)
2024 (134)
2019 (130)
2018 (106)
2017 (102)
2016 (97)
2014 (90)
2015 (77)
2013 (58)
2011 (57)
2012 (53)
2010 (46)
2006 (44)
2009 (42)
2008 (39)
2007 (27)
2005 (20)
2026 (16)
2003 (16)
2004 (15)
2000 (15)
1999 (14)
2002 (13)
2001 (13)
1998 (12)
1997 (2)

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Released palmitic acid–mediated TLR4/NF-κB activation enhances the virulence of Bordetella pertussis MT28 lineage

Whooping cough resurged globally despite the widespread vaccination. A macrolide-resistant (MR) lineage carrying the high-virulence ptxP3 allele, ptxP3 MR-MT28 (MT28), has imposed a substantial burden on pertussis epidemics, while the underlying factors driving its prevalence remain unclear. Thus...

2025-12-21 | MTBLS13545 | MetaboLights

Palmitic acid-mediated TLR4/NF-κB activation drives the pathogenicity of hypervirulent Bordetella pertussis MT28 lineage

2025-06-21 | MTBLS12625 | MetaboLights

Comparative genomic hybridization of Bordetella pertussis clinical isoltates circultating in Senegal

Genomic content of Bordetella pertussis clinical isolates circulating in Senegal

ORGANISM(S): Bordetella pertussis

2009-01-08 | E-MEXP-1674 | biostudies-arrayexpress

Deep longitudinal multi-omics analysis of Bordetella pertussis cultivated in bioreactors highlights medium starvations and transitory metabolisms, associated to vaccine antigen biosynthesis variations and global virulence regulation

Bordetella pertussis is the bacterial causative agent of whooping cough, a serious respiratory illness. An extensive knowledge on its virulence regulation and metabolism is a key factor to ensure pertussis vaccine manufacturing process robustness. The aim of this study was to refine our ...

2023-02-21 | MTBLS5762 | MetaboLights

Bordetella pertussis Tohama I iron limitation 1

B. pertussis Tohama I was grown in iron-depleted or iron-replete media and sampled at several time points to assess global gene expression

ORGANISM(S): Bordetella pertussis

2011-09-08 | E-MEXP-3263 | biostudies-arrayexpress

Differences in the genomic content of Bordetella pertussis strains before and after vaccine introduction in European countries

Resurgence of pertussis has been observed in many countries with high vaccination coverage and clonal expansion of certain Bordetella pertussis strains has been associated with recent epidemics in Europe. It is known that vaccinations have selected strains which are different from those used for vac...

ORGANISM(S): Bordetella pertussis

2011-10-03 | E-GEOD-29579 | biostudies-arrayexpress

Differential Proteomic Analysis of Bordetella pertussis OMV

Differential proteomic analysis of outer membrane vesicles from Bordetella pertussis (two strains: Bvg+ and Bvg-)

ORGANISM(S): Bordetella Pertussis (ncbitaxon:520)

2017-11-09 | MSV000081702 | MassIVE

Bordetella pertussis CGH

CGH analysis of 100 Bordetella pertussis strains

ORGANISM(S): Bordetella pertussis

2010-10-01 | E-TABM-809 | biostudies-arrayexpress

Comparative genomic hybridization of 137 Bordetella pertussis strains

Comparative genome hybridization (CGH) of sample of 137 Bordetella pertussis strains

ORGANISM(S): Bordetella pertussis

2006-04-30 | E-TABM-54 | biostudies-arrayexpress

Comparative genomic hybridization of Bordetella bronchiseptica, B. pertussis, and B. parapertussis strains

Comparative genome hybridization (CGH) of sample of 58 Bordetella bronchiseptica, B. pertussis, and B. parapertussis strains selected to span four clusters as defined by MLST.

ORGANISM(S): Bordetella pertussis

2005-12-31 | E-TABM-32 | biostudies-arrayexpress

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